mRNA_C-linearis_contig10.621.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.621.1
Unique NamemRNA_C-linearis_contig10.621.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: D7G8S4_ECTSI (Serine O-acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S4_ECTSI)

HSP 1 Score: 531 bits (1369), Expect = 6.430e-181
Identity = 288/432 (66.67%), Postives = 318/432 (73.61%), Query Frame = 3 
Query:  204 HGRVTSSRARAGFIAAGVGGSLHPPPAPAEAWASASARRWFLPGTTDLTAFSPPLVR--PRVDSKRHKHVTSTRSGARPDHDD--------IAPVATRKSGVDINVEPRPAAGXXXXXXXXXXXXXXXSNDSEVESLVELVKLLHSSDNPIWELVRFEGREASKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVCDPYQVGAGGAEEGARTEGGDDGGDAVKPRRVFSNFGSLYIGV 1469
            H R +SSR  A     G G           AW+SAS   W            P L+R    V S R        + AR DHDD         A  ++    +DI  +PR + G                 D  V SLV+LVKLL  S+NP+WELVRFEGREASKQSHVSSM+HGSVLARTSLEDAVSCDVA+KMATTFLSPTEVR L++DMYADEP LDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLM+WLWRRDR NLARYLQSICSEVCAADIHPA+ IGKGILMA GCDIVIGETA+VGDGVC+L GVTLGGTGNQTG+RHPKVGKGCH+G GSSILGNIPLGEGSRIEAASVVVKP KPYTINRGVPS+TV W+VCDP+Q  A G EEGA  E G++    VKPRR+FSN+GSLY+GV
Sbjct:   41 HSRRSSSRTAALIAGPGAG---------TRAWSSASVSSW------------PWLLRGGQGVRSTRSSEQRLIIANARTDHDDDVAEAGTSTAAGSSTSGSIDIKAKPRWSGGTAVEGRGDGSGGGGERQDPRVHSLVDLVKLLEVSENPLWELVRFEGREASKQSHVSSMLHGSVLARTSLEDAVSCDVADKMATTFLSPTEVRSLMSDMYADEPLLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMNWLWRRDRHNLARYLQSICSEVCAADIHPASTIGKGILMAGGCDIVIGETAMVGDGVCILQGVTLGGTGNQTGNRHPKVGKGCHIGVGSSILGNIPLGEGSRIEAASVVVKPIKPYTINRGVPSKTVAWVVCDPHQDVAVGVEEGAAEEEGEERTPTVKPRRLFSNYGSLYMGV 451
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: A0A835ZGB2_9STRA (Serine O-acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB2_9STRA)

HSP 1 Score: 271 bits (693), Expect = 2.860e-82
Identity = 135/251 (53.78%), Postives = 185/251 (73.71%), Query Frame = 3 
Query:  624 IWELVRFEGREASKQSH-VSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSL-PDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVCDPYQVGAGG 1370
            +W ++  EGR A  Q   +S+M+H +VL+   L DAV+  +ANK+AT F+   EV  ++T+M+  +P ++ ++A D+LAHA++D+    D+L+ +LFHKGF AL TYRL HWLW++ R+ LAR+ QS+ SEVCAADIHPA+RIG+GI +ASGCD+VIGETAVVG+ V +  GVTLGGTG + GDRHPKV  G  +G  +S+LGNI +GEG+ + + SVVVK   PYT N+GVPS+  GW+VCD   V AGG
Sbjct:   11 LWTVICVEGRVACAQDQDISAMLHSNVLSHDRLADAVTVLLANKLATPFIGAMEVGTIMTEMFEADPEVEEIMAADILAHALRDSDDGTDLLSVLLFHKGFHALATYRLAHWLWQQGRRQLARFFQSVNSEVCAADIHPASRIGRGIFLASGCDVVIGETAVVGNNVIIHSGVTLGGTGKERGDRHPKVADGVQIGVSASVLGNIKVGEGAHVGSCSVVVKEILPYTANKGVPSKLAGWLVCD---VEAGG 258
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: A0A7J7IBC7_9RHOD (Serine O-acetyltransferase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IBC7_9RHOD)

HSP 1 Score: 221 bits (563), Expect = 1.230e-61
Identity = 118/255 (46.27%), Postives = 173/255 (67.84%), Query Frame = 3 
Query:  573 VESLVELVKLLHSSDNPIWELVRFEGR-EASKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTD-MYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVG 1331
            V S+ ++V+ L  S +P+WEL+R E    A  +  ++S ++ +VL    LED ++  +AN++A+ F   T+   L  D +Y +E + + + A DLLA   +D ++   +  ++++KGF AL  YRL HWLWR+DR+ LA +LQS  S+  A DIHPAARIG G+L+     IVIGETAVVGD V +LH VTLGGTG + GDRHPKVG+G  +GAG+++LGNI +G+G++I A+SVV+K   PY I  GVP++ +G
Sbjct:  103 VISVEDMVRTLTYSTDPVWELIRREAEIGAGNEPQLASSLYATVLNHRCLEDTLAFHLANELASPFFQATQYVKLFRDALYQEESYREAIRA-DLLAVVRRDPAMKHCVAVLMYNKGFAALQAYRLAHWLWRQDRKVLALFLQSEISKSFAVDIHPAARIGSGVLVDHATGIVIGETAVVGDDVSMLHNVTLGGTGKEAGDRHPKVGRGVLLGAGATVLGNIRIGDGAQITASSVVLKDVAPYAIVSGVPAREIG 356
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: R7QQT4_CHOCR (Serine O-acetyltransferase n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QQT4_CHOCR)

HSP 1 Score: 216 bits (551), Expect = 3.310e-60
Identity = 113/259 (43.63%), Postives = 166/259 (64.09%), Query Frame = 3 
Query:  588 ELVKLLHSSDNPIWELVRFEGREASK-QSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVCDPYQVG 1361
            E+ + LH +++P+WEL++ E   A+  +  ++S ++ ++L   ++E+ +S  + N + T+    T+   L  D  +D+P     V  D+ A   +D +       +L+ KGF AL ++RL HWLW+++R++LA YLQS+ S   A DIHPAA IGKGIL+  G  IVIGETA +GD V +LH VTLGGTG +TGDRHPKVG G  +GAG++ILGNI +G G+ I A SVV+KP  P+ I  GVP + VG +    Y+ G
Sbjct:   81 EMTQSLHGTEDPLWELMKREASTAAADEPQLASSLYANILVHDTMEETLSTVLGNALDTSTFQATQWMELFGDALSDDPEYGKAVRADVTAFMDRDPATSHAARVLLYSKGFHALESWRLAHWLWKKERRSLALYLQSMISSCFAVDIHPAATIGKGILIDHGTGIVIGETATLGDNVSMLHNVTLGGTGKETGDRHPKVGDGVMIGAGATILGNITVGTGAHIAACSVVLKPVDPFAIISGVPGKMVGKVT---YKAG 336
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: A0A125YG49_CYAM1 (Serine O-acetyltransferase n=2 Tax=Cyanidioschyzon merolae TaxID=45157 RepID=A0A125YG49_CYAM1)

HSP 1 Score: 215 bits (547), Expect = 2.230e-59
Identity = 117/255 (45.88%), Postives = 173/255 (67.84%), Query Frame = 3 
Query:  573 VESLVELVKLLHSSDNPIWELVRFEGR-EASKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTD-MYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVG 1331
            V S+ ++V+ L  S +P+WELVR E    A+ +  ++S ++ +VL    LED ++  +AN++A+ F   T+   L  D +Y D+ + + + A DLLA   +D ++   +  +++ KG+ AL  YRL H LWR+DR+ LA +LQS  S+  A DIHPAARIG G+++     IVIGETAVVG+ V +LH VTLGGTG + GDRHPKVG+G  +GAG+++LGNI +G+G++I A+SVV+K   PYTI  GVP++ VG
Sbjct:  100 VISVDDMVRTLTYSSDPVWELVRREAEIGAANEPQLASSLYATVLNHRCLEDTLAFHLANELASPFFQATQYVKLFRDALYQDKSYREAIRA-DLLAVVRRDPAMKHCVAVLMYSKGYAALQAYRLAHLLWRQDRKVLALFLQSEISKCFAVDIHPAARIGSGVMIDHATGIVIGETAVVGNDVSMLHNVTLGGTGKEAGDRHPKVGRGVLLGAGATVLGNIRIGDGAQITASSVVLKDVPPYTIVSGVPAREVG 353
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: M2WVZ1_GALSU (Serine O-acetyltransferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WVZ1_GALSU)

HSP 1 Score: 209 bits (531), Expect = 8.990e-58
Identity = 111/259 (42.86%), Postives = 163/259 (62.93%), Query Frame = 3 
Query:  588 ELVKLLHSSDNPIWELVRFEGR-EASKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVCDPYQVG 1361
            EL + L  +D+P+WEL+R E    A  + H++S +   VL   +LEDA+S  +A+K+ + +   T+   LL +   D       + +DL+A   +D +    + A+LF KGF AL  YRL +WLW R R+ LA YLQS+ S+  A DIHPAA+IG G+ +     +VIGETA VG+ V +LH VTLGGTG +TGDRHPK+  G  +GAG+++LGNI +G G+ + A SVV+K  +P+ +  GVP++ +G +    YQ G
Sbjct:   51 ELARSLREADDPLWELIRREAEIGARNEPHLASTLFAIVLNHRTLEDALSFHLASKLESGYFQATQWMELLREAMNDSELYRNAIRKDLMAVTTRDPATQHAIQALLFSKGFHALECYRLANWLWERGRRPLALYLQSLVSKSFAVDIHPAAKIGSGVFIDHATGVVIGETATVGNHVSMLHNVTLGGTGKETGDRHPKIRDGVLLGAGATVLGNIVVGRGAYVSACSVVLKSVEPFMVVSGVPAKVIGILT---YQQG 306
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: A0A2W5NBU4_RHOSU (Serine acetyltransferase n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2W5NBU4_RHOSU)

HSP 1 Score: 206 bits (524), Expect = 1.050e-57
Identity = 111/246 (45.12%), Postives = 158/246 (64.23%), Query Frame = 3 
Query:  609 SSDNPIWELVRFEGREASKQSHV-SSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVC 1343
            +S +P+W ++R E  + ++   + +S++H  VL  TSLE A+S  VA K+A++ +S   +R +  + YA EP L      D++A   +D +    +  +LF KGF AL  YRL HWLW + RQ++A ++Q   SEV   DIHP AR+G+GIL+     IVIGETAVVGD V +LH VTLGGTG + GDRHPK+G G  +GAG+++LGNI +G  SR+ A SVV++P  P     GVP++ VG   C
Sbjct:    9 ASLDPVWAMIRREAEDVTRNEPLMASLVHVGVLYHTSLERALSYRVAQKLASSDMSDLILREIADEAYAAEPSLGTAARADIMAVYERDPACHRYIQPLLFFKGFQALQCYRLGHWLWTQGRQDMAYFVQMRTSEVFGVDIHPNARMGQGILIDHAHSIVIGETAVVGDNVSMLHSVTLGGTGKEDGDRHPKIGNGVLIGAGAAVLGNITIGSCSRVAAGSVVLEPVPPCKTVAGVPARIVGDAGC 254
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: A0A8D5WKG3_9PROT (Serine acetyltransferase n=1 Tax=Alphaproteobacteria bacterium SO-S41 TaxID=2829083 RepID=A0A8D5WKG3_9PROT)

HSP 1 Score: 203 bits (516), Expect = 1.710e-56
Identity = 111/244 (45.49%), Postives = 151/244 (61.89%), Query Frame = 3 
Query:  618 NPIWELVRFEGRE-ASKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVCD 1346
            +P+W  +R E    A  +  ++S +HGS+LA   LEDA+S  +ANK+A    S  ++R      +A  P +   V  DL A   +D +    +   LF KGF AL +YR+ HWLW+ +R  +A Y Q+  SEV  ADIHPAARIG+G+ +     +VIGETAVV D V +LHGVTLGG+G + GDRHPKV KG  +GA ++ILGNI +GE SR+ A SVV++P        GVP++ VG   CD
Sbjct:   12 DPVWSSLRAEAESIAVSEPALASFVHGSILAHARLEDALSFHLANKLANADTSAMKIRDTFQAAFAAAPEIGQAVRADLSAIRDRDPASRGFVQPFLFFKGFQALQSYRIAHWLWKSNRTWMAMYFQNRISEVFGADIHPAARIGRGVFIDHATGVVIGETAVVEDDVSMLHGVTLGGSGKERGDRHPKVRKGVMIGASATILGNIEVGEYSRVGAGSVVLQPVPANCTVAGVPAKVVGCAGCD 255
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BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: UPI00110E12D4 (serine O-acetyltransferase n=2 Tax=Ruegeria TaxID=97050 RepID=UPI00110E12D4)

HSP 1 Score: 202 bits (515), Expect = 1.990e-56
Identity = 105/244 (43.03%), Postives = 154/244 (63.11%), Query Frame = 3 
Query:  618 NPIWELVRFEGREA-SKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVCD 1346
            +P+W+ +  E + A  K+  +  ++H  +L   SL+ A+S  +A K+ +  +S   +R ++ + YAD+P L      DL+A   +D +   +L  +L+ KG+ A+  YR+ HWLW+R R +LA + Q  CSE+   DIHPAARIGKGI++     IVIGETAVVGD V +LH VTLGGTG +  DRHPK+G G  +GAG+ +LGNI +G  SRI A SVV++   P+    G+P++ VG   CD
Sbjct:   12 DPVWDRITTEAQSAVDKEPLMGGLVHACILHHKSLDKALSYRIAAKLCSNEMSMMVLREIVDEGYADDPGLLEAARADLMAVYERDPACHRLLQPILYFKGYQAMQAYRVAHWLWKRGRHDLAYFFQMRCSEIFGIDIHPAARIGKGIMIDHAHSIVIGETAVVGDNVSMLHSVTLGGTGKEEEDRHPKIGNGVLIGAGAKVLGNIKVGNCSRIAAGSVVLQEVPPFKTVAGIPAKIVGEAGCD 255
[Close]
BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Match: UPI00131D8062 (serine O-acetyltransferase n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI00131D8062)

HSP 1 Score: 202 bits (514), Expect = 3.410e-56
Identity = 113/242 (46.69%), Postives = 148/242 (61.16%), Query Frame = 3 
Query:  621 PIWELVRFEGREA-SKQSHVSSMIHGSVLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAEDLLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQSICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGGTGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYTINRGVPSQTVGWIVC 1343
            P+W  +R E   A S +  ++SM+H  +L+   LE A+S  +A K+    +    +R    + +A +P L   V  DL     +D +    L   LF KGF AL TYR+ HWLW + R+ LA  LQS  SE+   DIHPAARIG  I +  G DIVIGETAVVGD V LLHGVTLGGTG Q GDRHPK+G+G  VGAG+ ILGNI +G+ ++I + SVV+KP  P+    GVP++ V    C
Sbjct:   15 PVWAALRNEAAHAASTEPSLASMMHAVILSHDDLEHALSYQLARKLGDHEMRAMSMRETCEEAFASDPSLIATVHADLRVVFERDPACKGYLQPFLFFKGFQALQTYRVAHWLWNQGRETLAFQLQSRMSELFQLDIHPAARIGSAIFIDHGTDIVIGETAVVGDEVSLLHGVTLGGTGAQRGDRHPKLGRGVLVGAGAKILGNIQIGDYAKIASGSVVLKPVPPHCTAAGVPARLVNCPTC 256
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8S4_ECTSI6.430e-18166.67Serine O-acetyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A835ZGB2_9STRA2.860e-8253.78Serine O-acetyltransferase n=1 Tax=Tribonema minus... [more]
A0A7J7IBC7_9RHOD1.230e-6146.27Serine O-acetyltransferase n=1 Tax=Cyanidiococcus ... [more]
R7QQT4_CHOCR3.310e-6043.63Serine O-acetyltransferase n=2 Tax=Chondrus crispu... [more]
A0A125YG49_CYAM12.230e-5945.88Serine O-acetyltransferase n=2 Tax=Cyanidioschyzon... [more]
M2WVZ1_GALSU8.990e-5842.86Serine O-acetyltransferase n=1 Tax=Galdieria sulph... [more]
A0A2W5NBU4_RHOSU1.050e-5745.12Serine acetyltransferase n=2 Tax=Rhodobacteraceae ... [more]
A0A8D5WKG3_9PROT1.710e-5645.49Serine acetyltransferase n=1 Tax=Alphaproteobacter... [more]
UPI00110E12D41.990e-5643.03serine O-acetyltransferase n=2 Tax=Ruegeria TaxID=... [more]
UPI00131D80623.410e-5646.69serine O-acetyltransferase n=1 Tax=Caulobacter sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2944059..2948942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue2.6e-53
Seed eggNOG ortholog45157.CMA007CT
KEGG rclassRC00004,RC00041
KEGG koko:K00640
KEGG ReactionR00586
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111
KEGG ModuleM00021
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.serine O-acetyltransferase activity
EggNOG OGsCOG0110@1,KOG4750@2759
EC2.3.1.30
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons6
Model size2124
Cds size1374
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.621.1prot_C-linearis_contig10.621.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2944711..2948844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.378808-UTR-C-linearis_contig10:2944058..29447101622927347.378808-UTR-C-linearis_contig10:2944058..2944710Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2944059..2944710 -
1690879642.699251-UTR-C-linearis_contig10:2944058..29447101690879642.699251-UTR-C-linearis_contig10:2944058..2944710Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2944059..2944710 -
1622927347.465094-UTR-C-linearis_contig10:2948844..29489421622927347.465094-UTR-C-linearis_contig10:2948844..2948942Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2948845..2948942 -
1690879642.822161-UTR-C-linearis_contig10:2948844..29489421690879642.822161-UTR-C-linearis_contig10:2948844..2948942Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2948845..2948942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.3894863-CDS-C-linearis_contig10:2944710..29449381622927347.3894863-CDS-C-linearis_contig10:2944710..2944938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2944711..2944938 -
1690879642.715678-CDS-C-linearis_contig10:2944710..29449381690879642.715678-CDS-C-linearis_contig10:2944710..2944938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2944711..2944938 -
1622927347.4072893-CDS-C-linearis_contig10:2946035..29461961622927347.4072893-CDS-C-linearis_contig10:2946035..2946196Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2946036..2946196 -
1690879642.726531-CDS-C-linearis_contig10:2946035..29461961690879642.726531-CDS-C-linearis_contig10:2946035..2946196Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2946036..2946196 -
1622927347.4222124-CDS-C-linearis_contig10:2946514..29465871622927347.4222124-CDS-C-linearis_contig10:2946514..2946587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2946515..2946587 -
1690879642.7581353-CDS-C-linearis_contig10:2946514..29465871690879642.7581353-CDS-C-linearis_contig10:2946514..2946587Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2946515..2946587 -
1622927347.4318345-CDS-C-linearis_contig10:2947152..29473801622927347.4318345-CDS-C-linearis_contig10:2947152..2947380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2947153..2947380 -
1690879642.7890134-CDS-C-linearis_contig10:2947152..29473801690879642.7890134-CDS-C-linearis_contig10:2947152..2947380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2947153..2947380 -
1622927347.4408379-CDS-C-linearis_contig10:2947688..29478231622927347.4408379-CDS-C-linearis_contig10:2947688..2947823Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2947689..2947823 -
1690879642.8037727-CDS-C-linearis_contig10:2947688..29478231690879642.8037727-CDS-C-linearis_contig10:2947688..2947823Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2947689..2947823 -
1622927347.4506447-CDS-C-linearis_contig10:2948295..29488441622927347.4506447-CDS-C-linearis_contig10:2948295..2948844Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2948296..2948844 -
1690879642.8128881-CDS-C-linearis_contig10:2948295..29488441690879642.8128881-CDS-C-linearis_contig10:2948295..2948844Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2948296..2948844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.621.1

>prot_C-linearis_contig10.621.1 ID=prot_C-linearis_contig10.621.1|Name=mRNA_C-linearis_contig10.621.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=458bp
MHPPGRRRRWHSVAKVGLAASLVQSFAVPCLCGGNHGRVTSSRARAGFIA
AGVGGSLHPPPAPAEAWASASARRWFLPGTTDLTAFSPPLVRPRVDSKRH
KHVTSTRSGARPDHDDIAPVATRKSGVDINVEPRPAAGGGAVVGGEDILG
GGGSNDSEVESLVELVKLLHSSDNPIWELVRFEGREASKQSHVSSMIHGS
VLARTSLEDAVSCDVANKMATTFLSPTEVRCLLTDMYADEPFLDFVVAED
LLAHAMQDTSLPDVLTAMLFHKGFTALTTYRLMHWLWRRDRQNLARYLQS
ICSEVCAADIHPAARIGKGILMASGCDIVIGETAVVGDGVCLLHGVTLGG
TGNQTGDRHPKVGKGCHVGAGSSILGNIPLGEGSRIEAASVVVKPTKPYT
INRGVPSQTVGWIVCDPYQVGAGGAEEGARTEGGDDGGDAVKPRRVFSNF
GSLYIGV*
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mRNA from alignment at C-linearis_contig10:2944059..2948942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.621.1 ID=mRNA_C-linearis_contig10.621.1|Name=mRNA_C-linearis_contig10.621.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4884bp|location=Sequence derived from alignment at C-linearis_contig10:2944059..2948942- (Chordaria linearis ClinC8C monoicous)
AGGGCACAGAGGGCACACAGAGTAGTTTCGTGAGCTTGAGGCTCGGTCGC
CGCAGCACCTTGGCACCGAGAAAGAGGAAGAGATCGATCTTCACGCGCAT
GCATCCGCCCGGGCGCAGACGGCGATGGCATTCGGTGGCCAAGGTTGGAC
TGGCGGCTTCGCTGGTTCAATCTTTTGCTGTGCCGTGCCTTTGCGGAGGG
AACCACGGCCGGGTAACCAGCAGCAGGGCGAGGGCAGGGTTCATCGCAGC
AGGCGTCGGGGGGTCGCTTCACCCACCACCAGCACCTGCAGAAGCTTGGG
CGTCGGCGTCGGCACGGCGATGGTTTCTGCCAGGAACAACGGACTTGACT
GCTTTCTCTCCGCCGTTAGTGAGACCAAGAGTAGACAGCAAGAGACACAA
ACATGTCACTTCAACCCGCAGTGGCGCGAGACCTGATCACGACGATATTG
CACCGGTAGCGACGAGAAAATCAGGCGTCGATATCAACGTTGAGCCGCGA
CCGGCAGCAGGTGGGGGGGCAGTGGTCGGGGGCGAAGATATTCTTGGCGG
CGGAGGAAGCAACGATTCGGAGGTGGAGTCGCTGGTGGAGCTGGTGAAGC
TTCTTCACAGCTCGGACAATCCTATCTGGGAGTTGGTGCGCTTCGAGGTG
CGAGAGAGAGAGAGGGTGGGGGGGGGCAGGATTCCATCGTACATGCATGC
ACCAATGACACCACCAATTTCGCATGATGCACATGGTGTCTTTAGCTCGA
GGTGCCCTATCCTGAAGGGGTGGTACCTGGCACGTTGTATTTATCTGCCG
CGATGGCAACCATGTACGAACGTACGAACTGACGAACTTAGGAACCGGGT
GACTTGTATCGAGTCTAGGAACCAACGGCCGCCGATGGGTAAAAGTGTCC
GAGGTGTACGACATTGTGGGTTCTGCTTATGTACGCTTCCCCTTGTCGAA
ATATTCCACGCGCAACGGGTACAGCATAAATGTCTCACAGGGAAACTCTT
TGGTGAACCTAAGCAGTAGTTTCACCGCTACCGCCGTGTTGGACCACACG
CTTTCTCCGGTGTAGGAGGACCCACAAGCACGTTGCAAGATTAATCGCGG
CACGTGCTTACTCACACAGGGTCGCGAGGCTTCGAAGCAGTCGCATGTGT
CGTCAATGATACACGGCTCGGTGCTGGCTCGCACGTCACTGGAGGACGCC
GTGTCGTGCGACGTCGCCAACAAAATGGCCACCACCTTCCTTTCGCCGAC
AGAGGTACTACTGCTGTGAGGTTGCTCACGCGTGAAGTGGCCTCTAAAGA
AGGCCTGTTTGGCTCTTGCTTGGTACGTACGGCCCTTGCACCACTTTTAC
GAAACCATTTACACACTCGACCTTGCACGCTGTGCCTGCTACATTCGAAA
CGCACCACCCAGCCTATCTTGGTGTTTGTTGTGCCTCCCGAAATCGACCC
TTTTCCGCGTCGAGCAAAATGCGTTCTGCCCTCTCGCCAACCGACCCTGG
CCGGCCACCATCGCTGTTTGGTCTTCTCCTGGGTAACGTGTCGACCGTCT
TCGTGTGACCAGGTGAGGTGTCTACTGACCGACATGTACGCGGACGAGCC
GTTCTTGGACTTCGTTGTGGCTGAAGACTTGCTGGCGCACGCCATGCAGG
ACACATCTTTACCCGACGTGCTGACGGCGATGCTCTTCCACAAGGGGTTC
ACGGCGCTCACCACGTATCGGCTCATGCACTGGTTGTGGCGAAGGGACAG
GCAGAACCTGGCCCGGTACTTGCAGTCTATCTGCTCGGAGGTGATTTTTG
GGCTGCATGTGTACCTGAGATCGAAAGAGTAGTACGAGACGGTCAAGGAA
GTACCCGTATTACGCTGTGGCTGTGCTGTGTCTCAGGAATCTGGTGTCGC
ACAGCGTGCCTTTCTTCTACTTGTGTGTGCGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTCGTGTGTATCTTTTGTTTCCGCCCGTCAGGCACAAA
GGCCCACTTGAGCGATGGCCACCGCCATAAAGCTGCGCATTTCTAAATAC
GCTAAAGCTCCTCGGCTGCGCTCCGTGCTGTGCCGTGCGGATTCTGTGTT
TCGATTTGGATGGCTGGGTTGAGCTGGGTTGCCTGTTTTCCTCGTGTTTT
TGACACTGCCTGAGGTTGTACATGGCGTGCTTCGACGCGATCGCACCAAA
GCCGCTCCTAGTTTTCTTGCGGGCTTTTCATTTTGGTAACATTGTTTTCC
ATGCGCTGCTACTCCGTGCTCCTGGCGGTGAGCTCTCGGGATAGCTGTTG
ATCCATTTCAACGTCTCGTGCCGTGTTGTTCCGGCTTTGTGTTTGTTTCC
TGCAGGTGTGTGCCGCAGATATCCACCCAGCGGCCAGAATAGGCAAAGGG
ATTCTCATGGCCAGCGGCTGTGACATTGGTAGGTGATATGGCACCCCGTC
TGACGAGAAGGCCTATTCAAAAGGCAGTGCAAACACACACGTCTCATGTT
TCTCCTTTGCGAGTGGTAAGCTCTACAGCAAGTGTGACAAATACAGAATA
CATGCATTCCCCATCACAGCAGTTGATTGTAAAGCTTGTTTTTGTCAAGC
CATTCCTCGTAGGTATACATGCTACCACCGAAGGCCGTCCTCCTACCGCA
CGCACCATGATGCGGTGCTCTGATCATCAACGCCAGGCGTGCCACGCTTC
TTTGCTCACTTTCACACTGGTGCTTCACCCTCAACCTTGAAACCAGTCAT
AGGCGAGACTGCGGTGGTTGGGGACGGAGTGTGTCTCCTACATGGCGTGA
CTCTGGGGGGCACGGGAAATCAGACTGGGGATCGGCACCCCAAGGTCGGC
AAGGGTTGCCATGTTGGCGCCGGTTCCTCGATCCTTGGGAATATACCCTT
GGGAGAGGTGAGAATTAAGGGTTCAAGCAGGCGTGTGTGTTGCACCACGT
ATACAGGTTTCAAAATTCGATGTTCGCTGCATCAGCAGATTTGAAAACAC
CGAGTGCAGGGAATGCTTGCTTTCAGGTTCAGTCTCAAAAGCTCTATCCA
TCTGTTCAAATTGAACGAGTCGAACACTTGACGCTATTGATAGTCGTAAC
TGTTGGGCCGTTCTTCCCCAACTAGGCTAACCTTGACAGCAGCTGGTAGA
GACATGAGGGTCAATATGAGCTGCGGAAAACTGAGTATGTTACAAACCTC
GGATCACCACGTAGAAGGGAGAGACTGTCAGTTTCTTGGTCGACTCTCGG
AGATTAATGCTAAGGGGGGAGACGAGTTGCCATGTGCAACAATCTCGTGA
CGAGCCACAGCGAGTGCGACCAAGTTTAATTTAGCATGGGATCCTGTAGG
TGCTCCGTCTCAGCAGGGAGATGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TCCTCACATTAAAAAACATCCCGGTCTCGTCTCTGTCCAGTCCCTCCTTC
CGTCTCAACCTCTCCGTACTAATCCATCACTTGACGCGGCCAATTTCCGT
GGTCACAAGCCAACTTACCTAAAAAGGTATACTGAAAATAAAAACGGACC
CCAAGGGTCAGCAGAGCGATAAAATACGATAAAAAATAAAATAATCAGGA
AACAAATAGTCTGGAGCCCTCCGCTCCCCTCTACACGCTATGTGAGGCAA
AAGTAAAAATAAAATAAGAGTGGAGGCGCTAACATCACCAACCAAGGGTA
TAACCTCCCGATTCTATCTTGCTACCCCTACGAAGCCAGGGTGTTCCGTC
CCAGTGCCCCGGCAAGGCAAACACATAGTCGGATCCCTCTCCACCGACTA
AGGTGCATACTTCGTATATTTATATGTTACAAGGGAAGCAGACAAGGAGA
CATGTCGACAAAAATAAAACATCCAACACGCAGAGGGATGGGCCAAGTAT
AACGGGCCCCGAAAGCAGCAGACAACCCCCCCACCAACTCACCCACCTCC
CCTCCCCCAACCCAACCCAACCATCCACTATTTCGCGGCCACCGCTGTCG
GTAGGGCTCCCGCATCGAGGCGGCCTCCGTGGTTGTCAAACCCACAAAGC
CGTACACGATCAACAGGGGTGTGCCAAGCCAAACGGTGGGGTGGATCGTG
TGCGACCCCTATCAAGTTGGGGCCGGTGGGGCGGAGGAAGGTGCCAGAAC
AGAGGGCGGGGATGACGGCGGGGATGCCGTGAAGCCCCGGCGAGTTTTCT
CTAACTTCGGCTCGCTATACATAGGGGTGTGAGGCACGGGACTGGTTTGA
TTTCCAGGCTTCTCGCACTTGTAAATATTTTGTTCAAGGATACGTTGACT
ACGTAAGTCTAGCTCTTCATGTCCCTTAATCTACGTGGTTTTGGTGGAGC
ATCCGGAGTGACGGGGAGGGTACAGCAACCGTACATTGTCGCGGGACCAA
TAAGCTCTCTTAGTTGGTGTTTGTTCATGTGGTGTCGCAAAATGATGCCG
TCACCGGTGCTCGAGTTCGTGGCAATAATCTTGGAATCCCGGTGCATAAA
CTATAGAAGTGGGGGTCTACCAAACCAAATGCGGCAGCGAGCAAAGCAAG
TAGCCCAAGCGGTTCGAATAGCGGAGGTAGAATATAATTTATCTCCGACT
GGAATATGTTCGCGGATGTTTGTGGTAGTTGGTGAATATGCTAAGCTCCA
GGCTCTTTTGGGGTTTTCATACGGGTATGACTGCTGTGTCACGGTTTGTG
TGTCGGTGTCCCTCACACAAAGTTAGTCTACTGCTGTAGATACGTTCTTA
CAAAATGGCGGCGAACATGTTTTATGCAGCCGGCAGAATTGTAGTATAGG
TACATATTTCCGGGCCTTGGGGCCTCTGGCGCACCTGACACACGCGCACC
AAGGTTGCCGCCGGGGCACCGTGTAAGCATGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2944059..2948942-

>mRNA_C-linearis_contig10.621.1 ID=mRNA_C-linearis_contig10.621.1|Name=mRNA_C-linearis_contig10.621.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at C-linearis_contig10:2944059..2948942- (Chordaria linearis ClinC8C monoicous)
ATGCATCCGCCCGGGCGCAGACGGCGATGGCATTCGGTGGCCAAGGTTGG
ACTGGCGGCTTCGCTGGTTCAATCTTTTGCTGTGCCGTGCCTTTGCGGAG
GGAACCACGGCCGGGTAACCAGCAGCAGGGCGAGGGCAGGGTTCATCGCA
GCAGGCGTCGGGGGGTCGCTTCACCCACCACCAGCACCTGCAGAAGCTTG
GGCGTCGGCGTCGGCACGGCGATGGTTTCTGCCAGGAACAACGGACTTGA
CTGCTTTCTCTCCGCCGTTAGTGAGACCAAGAGTAGACAGCAAGAGACAC
AAACATGTCACTTCAACCCGCAGTGGCGCGAGACCTGATCACGACGATAT
TGCACCGGTAGCGACGAGAAAATCAGGCGTCGATATCAACGTTGAGCCGC
GACCGGCAGCAGGTGGGGGGGCAGTGGTCGGGGGCGAAGATATTCTTGGC
GGCGGAGGAAGCAACGATTCGGAGGTGGAGTCGCTGGTGGAGCTGGTGAA
GCTTCTTCACAGCTCGGACAATCCTATCTGGGAGTTGGTGCGCTTCGAGA
TGCATCCGCCCGGGCGCAGACGGCGATGGCATTCGGTGGCCAAGGTTGGA
CTGGCGGCTTCGCTGGTTCAATCTTTTGCTGTGCCGTGCCTTTGCGGAGG
GAACCACGGCCGGGTAACCAGCAGCAGGGCGAGGGCAGGGTTCATCGCAG
CAGGCGTCGGGGGGTCGCTTCACCCACCACCAGCACCTGCAGAAGCTTGG
GCGTCGGCGTCGGCACGGCGATGGTTTCTGCCAGGAACAACGGACTTGAC
TGCTTTCTCTCCGCCGTTAGTGAGACCAAGAGTAGACAGCAAGAGACACA
AACATGTCACTTCAACCCGCAGTGGCGCGAGACCTGATCACGACGATATT
GCACCGGTAGCGACGAGAAAATCAGGCGTCGATATCAACGTTGAGCCGCG
ACCGGCAGCAGGTGGGGGGGCAGTGGTCGGGGGCGAAGATATTCTTGGCG
GCGGAGGAAGCAACGATTCGGAGGTGGAGTCGCTGGTGGAGCTGGTGAAG
CTTCTTCACAGCTCGGACAATCCTATCTGGGAGTTGGTGCGCTTCGAGGG
TCGCGAGGCTTCGAAGCAGTCGCATGTGTCGTCAATGATACACGGCTCGG
TGCTGGCTCGCACGTCACTGGAGGACGCCGTGTCGTGCGACGTCGCCAAC
AAAATGGCCACCACCTTCCTTTCGCCGACAGAGGGTCGCGAGGCTTCGAA
GCAGTCGCATGTGTCGTCAATGATACACGGCTCGGTGCTGGCTCGCACGT
CACTGGAGGACGCCGTGTCGTGCGACGTCGCCAACAAAATGGCCACCACC
TTCCTTTCGCCGACAGAGGTGAGGTGTCTACTGACCGACATGTACGCGGA
CGAGCCGTTCTTGGACTTCGTTGTGGCTGAAGACTTGCTGGCGCACGCCA
TGCAGGACACATCTTTACCCGACGTGCTGACGGCGATGCTCTTCCACAAG
GGGTTCACGGCGCTCACCACGTATCGGCTCATGCACTGGTTGTGGCGAAG
GGACAGGCAGAACCTGGCCCGGTACTTGCAGTCTATCTGCTCGGAGGTGA
GGTGTCTACTGACCGACATGTACGCGGACGAGCCGTTCTTGGACTTCGTT
GTGGCTGAAGACTTGCTGGCGCACGCCATGCAGGACACATCTTTACCCGA
CGTGCTGACGGCGATGCTCTTCCACAAGGGGTTCACGGCGCTCACCACGT
ATCGGCTCATGCACTGGTTGTGGCGAAGGGACAGGCAGAACCTGGCCCGG
TACTTGCAGTCTATCTGCTCGGAGGTGTGTGCCGCAGATATCCACCCAGC
GGCCAGAATAGGCAAAGGGATTCTCATGGCCAGCGGCTGTGACATTGGTG
TGTGCCGCAGATATCCACCCAGCGGCCAGAATAGGCAAAGGGATTCTCAT
GGCCAGCGGCTGTGACATTGTCATAGGCGAGACTGCGGTGGTTGGGGACG
GAGTGTGTCTCCTACATGGCGTGACTCTGGGGGGCACGGGAAATCAGACT
GGGGATCGGCACCCCAAGGTCGGCAAGGGTTGCCATGTTGGCGCCGGTTC
CTCGATCCTTGGGAATATACCCTTGGGAGAGTCATAGGCGAGACTGCGGT
GGTTGGGGACGGAGTGTGTCTCCTACATGGCGTGACTCTGGGGGGCACGG
GAAATCAGACTGGGGATCGGCACCCCAAGGTCGGCAAGGGTTGCCATGTT
GGCGCCGGTTCCTCGATCCTTGGGAATATACCCTTGGGAGAGGGCTCCCG
CATCGAGGCGGCCTCCGTGGTTGTCAAACCCACAAAGCCGTACACGATCA
ACAGGGGTGTGCCAAGCCAAACGGTGGGGTGGATCGTGTGCGACCCCTAT
CAAGTTGGGGCCGGTGGGGCGGAGGAAGGTGCCAGAACAGAGGGCGGGGA
TGACGGCGGGGATGCCGTGAAGCCCCGGCGAGTTTTCTCTAACTTCGGCT
CGCTATACATAGGGGTGTGAGGCTCCCGCATCGAGGCGGCCTCCGTGGTT
GTCAAACCCACAAAGCCGTACACGATCAACAGGGGTGTGCCAAGCCAAAC
GGTGGGGTGGATCGTGTGCGACCCCTATCAAGTTGGGGCCGGTGGGGCGG
AGGAAGGTGCCAGAACAGAGGGCGGGGATGACGGCGGGGATGCCGTGAAG
CCCCGGCGAGTTTTCTCTAACTTCGGCTCGCTATACATAGGGGTGTGA
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