mRNA_C-linearis_contig10.618.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: D7G8R1_ECTSI (Macro domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8R1_ECTSI) HSP 1 Score: 323 bits (828), Expect = 2.680e-103 Identity = 195/305 (63.93%), Postives = 218/305 (71.48%), Query Frame = 1 Query: 16 ITATGGNRGKAAAGPPPRTLFKLHGSSVLSISAGDLTKWEGDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKLEAVAEADGDASPKKLGAKPDSEAKEGKET---KGKDAQEPATKPSSL-VSETADATPALDGDEKPKASESVAPAEETPEAQEASAAEVEPMSQEESLGGLDGLVED 918
+ A G + +G P R LFKL SSVL+IS GDLTKW+GDA+VNAANE MLGGGGVDGAIHRAAGR+LL ACY V P +S IRCPTGEARITPGFRL AKFVIHTVGPVYE+KE +APLLR+AIKNSLLLCKENG+KSVAFPA+SCGVYGYPA EAAEIAIDTMLEFSEGIDLIEFVLFGKDTY PF ASEKL V E G G+ DS A + T K D P T + VS A P L+ +KP+ E P P ++E A VEPMSQEE+ G LDG VE+
Sbjct: 25 MNARGAGSSRRRSGLPTRRLFKLKDSSVLAISGGDLTKWKGDAVVNAANEWMLGGGGVDGAIHRAAGRDLLKACYDVEP--NSEDIRCPTGEARITPGFRLPAKFVIHTVGPVYENKEVSAPLLRSAIKNSLLLCKENGVKSVAFPAISCGVYGYPAGEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYNPFMKKASEKLAVVKEDSG-------GSPDDSNAPKASSTSEPKTVDEGAPNTASGEVSVSAGGAAAPTLEEKQKPEEPECAKPPA-GPTSEEGDGA-VEPMSQEETFGTLDGSVEE 318
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: UPI0005FB6297 (macro domain-containing protein VPA0103 isoform X1 n=2 Tax=Jatropha curcas TaxID=180498 RepID=UPI0005FB6297) HSP 1 Score: 203 bits (517), Expect = 5.260e-59 Identity = 106/185 (57.30%), Postives = 128/185 (69.19%), Query Frame = 1 Query: 70 TLFKLHGSSVLSISAGDLTKW----EGDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKL 612
T+F L SSVL I+ GD+TKW DAIVN ANE MLGGGG DGAIHRAAG ELL+ACY V V GIRCPTGEARITPGF+L A VI+TVGP+Y+ A L+NA +NSL + K+N +K +AFPA+SCGVYGYP EAA ++I T+ EF + + + FVLF D Y + A E L
Sbjct: 95 TVFPLSSSSVLKINKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELLDACYKVPEVQP--GIRCPTGEARITPGFKLPASHVIYTVGPIYDTDSNPAASLKNAYRNSLTVAKDNNIKYIAFPAISCGVYGYPYEEAAAVSISTIKEFKDDLKEVHFVLFSDDIYNVWLKKAKELL 277
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: A0A7J0EAM2_9ERIC (Appr-1-p processing enzyme family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0EAM2_9ERIC) HSP 1 Score: 199 bits (507), Expect = 1.590e-58 Identity = 108/200 (54.00%), Postives = 134/200 (67.00%), Query Frame = 1 Query: 28 GGNRGKAAAGPPPRTLFKLHGSSVLSISAGDLTKWE----GDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKLE 615
GG+RG A+ G F+L SS L I GD+T+W DAIVN ANE MLGGGG DGA+HR AG EL ACY VR V G+RCPTGEARITPGFRL A VIHTVGP+Y+ LLR+A +NSL + KENG++ +AFPA+SCG++GYP +EAA +AI T+ EF+ + FVLF D Y + A+E L+
Sbjct: 6 GGSRG-ASNGGEDSVNFRLSPSSDLRIQKGDITRWSVDGSSDAIVNPANERMLGGGGADGAVHRTAGPELRAACYNVREVRP--GVRCPTGEARITPGFRLPASHVIHTVGPIYDVANNPEALLRSAYRNSLRVAKENGIQYIAFPAISCGIFGYPFDEAATVAISTVREFANDFQEVHFVLFADDIYNVWLDKANELLQ 202
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: A0A1R3J5B3_9ROSI (Appr-1-p processing n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3J5B3_9ROSI) HSP 1 Score: 199 bits (506), Expect = 1.630e-58 Identity = 106/185 (57.30%), Postives = 128/185 (69.19%), Query Frame = 1 Query: 76 FKLHGSSVLSISAGDLTKW----EGDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKLEA 618
FKL +S+L I+ GD+TKW DAIVN AN+ MLGGGG DGAIHRAAG EL +ACY V V GIRCPTGEARITPGF+L A VIHTVGP+Y+ + LRNA KNSL + KEN ++ +AFPA+SCGVYGYP EAA +AI T+ EF+ I + FVLF + Y + A E L+A
Sbjct: 12 FKLSKTSLLKINKGDITKWFVDGSSDAIVNPANQKMLGGGGADGAIHRAAGPELRDACYEVPEVQP--GIRCPTGEARITPGFKLPASHVIHTVGPIYDYDKDPKASLRNAYKNSLTVAKENNIQYIAFPAISCGVYGYPFEEAATVAISTVKEFANDIKEVHFVLFEDEIYNIWLNKAKELLQA 194
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: A0A6N2AZA7_SOLCI (Macro domain-containing protein n=3 Tax=Solanoideae TaxID=424551 RepID=A0A6N2AZA7_SOLCI) HSP 1 Score: 199 bits (505), Expect = 2.160e-58 Identity = 106/192 (55.21%), Postives = 129/192 (67.19%), Query Frame = 1 Query: 49 AAGPPPRTLFKLHGSSVLSISAGDLTKWE----GDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKL 612
A+G F+L SS+L I GD+T+W DAIVN ANE MLGGGG DGAIHRAAG EL +ACY VR V GIRCPTGEARITPGFRL A VIHTVGPVY+ L NA +NSL + KEN ++ +AFPA+SCGV+GYP +EAA +AI T+ EF + + FVLF + Y + A+E+L
Sbjct: 2 ASGGENSVTFQLTPSSLLKIQKGDITRWSIDGSSDAIVNPANERMLGGGGADGAIHRAAGPELRDACYKVREVQP--GIRCPTGEARITPGFRLPASHVIHTVGPVYDANPNPKASLTNAYRNSLRVAKENNIQYIAFPAISCGVFGYPYDEAATVAISTVKEFGSDLKEVHFVLFSDEIYDAWVTAANEQL 191
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: A0A2C9VLA2_MANES (Macro domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VLA2_MANES) HSP 1 Score: 201 bits (512), Expect = 2.660e-58 Identity = 105/183 (57.38%), Postives = 127/183 (69.40%), Query Frame = 1 Query: 76 FKLHGSSVLSISAGDLTKW----EGDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKL 612
F L SSVL I+ GD+TKW DAIVN ANE MLGGGG DGAIHRAAG EL +ACY V V + IRCPTGEARITPGF+L A VIHTVGP+Y+ A +L+NA +NSL + K+N +K +AFPA+SCGVYGYP EAA +AI T+ EF++G+ + FVLF D + A E L
Sbjct: 94 FPLSSSSVLKINKGDITKWFVDGSSDAIVNPANEKMLGGGGADGAIHRAAGPELRDACYKVPEVQPT--IRCPTGEARITPGFKLPASHVIHTVGPIYDPSRNCAAILKNAYRNSLTVAKDNNIKYIAFPAISCGVYGYPFEEAAAVAISTVKEFADGLKEVHFVLFSDDIDNVWLKKAKELL 274
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: M1AU85_SOLTU (Protein LRP16 n=4 Tax=Solanum TaxID=4107 RepID=M1AU85_SOLTU) HSP 1 Score: 198 bits (503), Expect = 4.280e-58 Identity = 106/192 (55.21%), Postives = 130/192 (67.71%), Query Frame = 1 Query: 49 AAGPPPRTLFKLHGSSVLSISAGDLTKWE----GDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKL 612
A+G F+L SS+L I GD+T+W DAIVN ANE MLGGGG DGAIHRAAG EL +ACY VR V H G+RCPTGEARITPGFRL A VIHTVGPVY+ L NA +NSL + KEN ++ +AFPA+SCGV+GYP +EAA +AI T+ EF + + FVLF + Y + A+E+L
Sbjct: 2 ASGGENSVTFQLTPSSLLKIQKGDITRWSIDGSSDAIVNPANERMLGGGGADGAIHRAAGPELRDACYKVREV-HP-GVRCPTGEARITPGFRLPASHVIHTVGPVYDANPNPKASLTNAYRNSLRVAKENNIQYIAFPAISCGVFGYPYDEAATVAISTVKEFGSDLKEVHFVLFSDEIYDAWVTAANEQL 191
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: UPI000B790D55 (uncharacterized protein LOC110668061 isoform X1 n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B790D55) HSP 1 Score: 200 bits (508), Expect = 9.260e-58 Identity = 106/185 (57.30%), Postives = 127/185 (68.65%), Query Frame = 1 Query: 70 TLFKLHGSSVLSISAGDLTKW----EGDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKL 612
T+F L SSVL I+ GD+TKW DAIVN ANE MLGGGG DGAIHRAAG ELL+ACY V V G+RCPTGEARIT GF+L A VIHTVGP+Y+ A L+NA +NSL + K+N +K +AFPALSCGVYGYP EAA +A T+ EF++ + I FVLF D Y + A + L
Sbjct: 88 TVFPLSSSSVLKINKGDITKWFVDGSSDAIVNPANEKMLGGGGADGAIHRAAGPELLDACYRVPEVQP--GVRCPTGEARITLGFKLPASHVIHTVGPIYDTDRGPASSLKNAYRNSLTVAKDNNIKYIAFPALSCGVYGYPYEEAAAVATSTVKEFADDLKEIHFVLFSDDIYNIWLKKAKQLL 270
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: UPI0011D2ACB0 (uncharacterized protein LOC115663435 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2ACB0) HSP 1 Score: 199 bits (507), Expect = 9.360e-58 Identity = 108/184 (58.70%), Postives = 125/184 (67.93%), Query Frame = 1 Query: 76 FKLHGSSVLSISAGDLTKWE----GDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKLE 615
F L +S L I GD+TKW DAIVN ANE MLGGGG DGAIHRAAG ELL ACY V V GIRCPTGEARIT GFRL A VIHTVGP+Y+ LRNA +NSL++ KE L+ VAFPA+SCGVYGYP +EAA IAI T+ E S+G+ + FVLF D Y + + A E L+
Sbjct: 79 FSLSPTSALVIQKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELLEACYKVPEVRP--GIRCPTGEARITAGFRLPASHVIHTVGPIYDADSNPQASLRNAYRNSLMVAKEKKLQHVAFPAISCGVYGYPYDEAATIAISTLKESSDGLKEVHFVLFSDDIYNAWLSKAKELLQ 260
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Match: W9S9J7_9ROSA (Macro domain-containing protein n=3 Tax=Morus notabilis TaxID=981085 RepID=W9S9J7_9ROSA) HSP 1 Score: 197 bits (501), Expect = 9.980e-58 Identity = 103/185 (55.68%), Postives = 127/185 (68.65%), Query Frame = 1 Query: 76 FKLHGSSVLSISAGDLTKW----EGDAIVNAANEAMLGGGGVDGAIHRAAGRELLNACYAVRPVPHSRGIRCPTGEARITPGFRLNAKFVIHTVGPVYEDKEQAAPLLRNAIKNSLLLCKENGLKSVAFPALSCGVYGYPANEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYVPFFATASEKLEA 618
F L +S L I GD+TKW DAI+N ANE MLGGGG DGAIHRAAG +LL ACY V V S G+RCPTGEARITPGFRL V+ TVGP+Y + A LRN +NSL + KEN ++ +AFPA+SCGVYGYP +EA+ +AI T+ EF+ GI + FVLF +D Y + A+E L+A
Sbjct: 15 FPLSSTSSLVIQRGDITKWFVDGSTDAIINPANERMLGGGGADGAIHRAAGPDLLQACYGVPEV--SPGVRCPTGEARITPGFRLPVAHVVFTVGPMYNGRSTAEAALRNTYRNSLKIAKENNIQYIAFPAISCGVYGYPYDEASTVAISTIKEFANGIKEVHFVLFQEDIYSVWLNKANELLKA 197 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.618.1 >prot_C-linearis_contig10.618.1 ID=prot_C-linearis_contig10.618.1|Name=mRNA_C-linearis_contig10.618.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=435bp MAHCYITATGGNRGKAAAGPPPRTLFKLHGSSVLSISAGDLTKWEGDAIVback to top mRNA from alignment at C-linearis_contig10:2919421..2923117+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.618.1 ID=mRNA_C-linearis_contig10.618.1|Name=mRNA_C-linearis_contig10.618.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3697bp|location=Sequence derived from alignment at C-linearis_contig10:2919421..2923117+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2919421..2923117+ >mRNA_C-linearis_contig10.618.1 ID=mRNA_C-linearis_contig10.618.1|Name=mRNA_C-linearis_contig10.618.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at C-linearis_contig10:2919421..2923117+ (Chordaria linearis ClinC8C monoicous)back to top |