mRNA_C-linearis_contig10.617.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.617.1
Unique NamemRNA_C-linearis_contig10.617.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A6H5L1F6_9PHAE (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F6_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 5.540e-134
Identity = 192/274 (70.07%), Postives = 227/274 (82.85%), Query Frame = 1
Query:   94 SAAWLVAGGGVCVGLGYCLARRTLLSTARRLRGDVVETA--TTDPDWAPPKKQPPPGG-NKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRPRVTK 906
            S+ W+V G GV +G+GY L       ++RR R   ++ +  +T P W P  KQPPPGG + GHV++DP +LKSCY LMISSVVPRPIALTST APDGTVN APFSYFNT+GHDPPTLAVS+CRNGNGSKKD+L+N+  +GEFVV+IMSDWFVEAANH+CGSFPPEVDEM   GLTP+ S  VAPPR++ESA++MECKV+HT+DIVN  GD+TTTVV GEVVMFHVF HLLKENGAGEGKPTV+ +GL P+SRLGGNTY RLGS+FD+ RPRV K
Sbjct:   17 SSGWVVLGCGVGMGVGYLL-------SSRRSRRKTLDRSNLSTHPSWIPGDKQPPPGGEDTGHVRIDPRDLKSCYSLMISSVVPRPIALTSTLAPDGTVNCAPFSYFNTVGHDPPTLAVSVCRNGNGSKKDTLVNMLASGEFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKVRHTYDIVNSKGDVTTTVVFGEVVMFHVFTHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDISRPRVGK 283          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: D7G8R2_ECTSI (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R2_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 5.550e-109
Identity = 154/193 (79.79%), Postives = 174/193 (90.16%), Query Frame = 1
Query:  328 VVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRPRVTK 906
            VVPRPIALTST APDGTVN APFSYFNT+GHDPPTLAVS+CRNGNGSKKD+L+N+  +GEFVV+IMSDWFVEAANH+CGS PPEVDEM   GLTP+ S  VAPPR++ESA++MECKV+HT+DIVN  GD+TTTVV GEVVMFHVF HLLKENGAGEGKPTV+ +GL PISRLGGNTY RLGS+FD+PRPRV K
Sbjct:   49 VVPRPIALTSTLAPDGTVNCAPFSYFNTVGHDPPTLAVSVCRNGNGSKKDTLVNMLASGEFVVSIMSDWFVEAANHTCGSLPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKVRHTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPISRLGGNTYGRLGSVFDIPRPRVGK 241          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A8J6C7I8_DIALT (Flavin_Reduct domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C7I8_DIALT)

HSP 1 Score: 262 bits (669), Expect = 1.940e-82
Identity = 136/268 (50.75%), Postives = 173/268 (64.55%), Query Frame = 1
Query:   97 AAWLVAGGGVCVGLGYCLARRTLLSTARRLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNG--SKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            AA L AG G C+     L RR     A R     + +A   P WAPP+  PPP  +  HV +DP+ L SCYPLMIS+ VPRPIA  ST++     NLAPFSY     HDPPT+  S+  N      KKD+L NI+ +GEFVV +MS+W+VEAANH CG+FP   DE    GLT VPS++V PPRV E+A++ ECK+ H H++ N  G+++ T++LGEVVM H+   + + +GAG GKPTV    L P+SRLGGNTY R  S FDLPRP
Sbjct:    9 AAALAAGCGACL-----LWRRLAARRAARAPARALASAPPHPLWAPPQPMPPPFADASHVSLDPTALASCYPLMISAFVPRPIAFVSTRSDKYGGNLAPFSYAGLFNHDPPTVGFSVVSNARAPDGKKDTLANIDESGEFVVHVMSEWYVEAANHCCGAFPRGEDEFDLSGLTRVPSLKVGPPRVGEAAVAFECKLAHRHEMRNAKGEVSATLILGEVVMIHLAAGVCELDGAGAGKPTVRFDALQPMSRLGGNTYGRTTSTFDLPRP 271          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A7S4C094_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C094_CHRCT)

HSP 1 Score: 261 bits (666), Expect = 5.140e-82
Identity = 138/245 (56.33%), Postives = 163/245 (66.53%), Query Frame = 1
Query:  178 RRLRG-DVVETATTDPD----WAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGS-KKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            R+L G     TAT  P     W P +KQP P   K  V +DP ELKSCYPL+ISS VPRPIA  ST +  G  NLAPFSY   + HDPPT+ V ICR  N   KKD+L NI+  GEFVV IMS+WFVEAANH C +F   VDE    GLT VPS RV PPRV ESA+  EC ++H H++VN +G +T+T+V+GEVVM H    +   +GAGEGKPT+      PISRLGG+TY R  SMFDLPRP
Sbjct:   25 RQLSGISAAYTATAGPPPHPRWNPGEKQPLPFQTKDFVALDPKELKSCYPLVISSYVPRPIAFVSTLSASGEGNLAPFSYSGVVAHDPPTIVVGICRGRNADGKKDTLANIDATGEFVVCIMSEWFVEAANHCCSAFERGVDEFDQSGLTRVPSTRVKPPRVGESAMHYECVLRHRHEVVNASGVVTSTMVVGEVVMMHAASAVCNVDGAGEGKPTIDFAKFQPISRLGGDTYGRTLSMFDLPRP 269          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: L1IE62_GUITC (Flavin_Reduct domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IE62_GUITC)

HSP 1 Score: 258 bits (658), Expect = 5.240e-81
Identity = 127/237 (53.59%), Postives = 167/237 (70.46%), Query Frame = 1
Query:  181 RLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPR 891
            R +  VV+ +   P W   + QP P   + HV + PSELKSCYPL+IS+ VPRPIAL S+++  G VN+AP+SY   + HDPP + VS CR      KD+L NI    EFVV IMS+W+ E+ANH+CG+FPPEV+EM   GLTP+PS  ++PPRV ESA++ EC++ H +D+ N  G +TTTVV+GE+V FHV   +L+ NGAGEGKPTV+   L P+SRLGG TY R  ++FDLPR
Sbjct:   23 RRKRHVVKESPPHPSWKAGENQPIPYPGR-HVTLLPSELKSCYPLIISAYVPRPIALVSSKSAAGHVNVAPYSYTGAISHDPPAIVVSCCRKAGDVMKDTLANILDTKEFVVNIMSEWYAESANHTCGNFPPEVNEMDVAGLTPLPSKIISPPRVAESALNFECRLIHQYDMKNAQGKVTTTVVIGEIVAFHVHEGVLEMNGAGEGKPTVNFDALKPLSRLGGCTYGRTTAVFDLPR 258          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A835ZDF3_9STRA (Flavin_Reduct domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF3_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.740e-80
Identity = 135/253 (53.36%), Postives = 164/253 (64.82%), Query Frame = 1
Query:  136 LGYCLARRTLLSTARRLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            +G  L RR        L   V  T T  P+W P + QP P G+   V +DP+ L SCY L+ISS VPRPIA  S+   +G  NLAPFSYFN + HDPP +A+ ICR   G KKDSL NIE  GEFVV+IMSDWF+E+ANH CG F  +VDEMA  GLT   +  V PP V ESAI+MECK+ H +++ N  G  TTTVV+G+VVMFHV   +L     G  KPTV    L PI+RLGGNTY  + ++FDLPRP
Sbjct:   12 VGTTLLRRLRAPVPAALLSQVTTTTTPHPEWQPGQNQPHPYGDSERVALDPAALASCYGLVISSGVPRPIAFVSSLDSEGRRNLAPFSYFNFVAHDPPLVAIGICRK-RGEKKDSLANIEARGEFVVSIMSDWFIESANHCCGDFSSDVDEMALSGLTAARAKIVEPPLVAESAINMECKLVHKYEVKNAAGTDTTTVVIGQVVMFHVLEAVLDTVTHGPTKPTVHFDKLRPIARLGGNTYGIVNTVFDLPRP 263          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A7S0L4A2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L4A2_9EUKA)

HSP 1 Score: 253 bits (646), Expect = 3.470e-79
Identity = 137/246 (55.69%), Postives = 161/246 (65.45%), Query Frame = 1
Query:  181 RLRGDVVE------TATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGS--KKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            R+ GDV        TA     W P +KQP P    G V++ PS+LKSCYPLMIS+ VPRPIA  ST +  G  NLAPFSY   + HDPPT+AVSICRNG  +  KKD+L NI+  GEFVV IMS+WFVEAANH+CGSF   VDE    GLT +PS  V PPRV ESA+  ECK+   H+I+NK G  T TVV GEVV       +  ENGAGEGKPT+       ++RLGGNTY R+ S FDL RP
Sbjct:   12 RVEGDVASPTTVAVTAPPHEGWKPGEKQPLPFEG-GFVELIPSDLKSCYPLMISAYVPRPIAFVSTVSASGKGNLAPFSYSGCVAHDPPTIAVSICRNGRAADGKKDTLANIDDTGEFVVCIMSEWFVEAANHTCGSFERGVDEFDESGLTRLPSSIVKPPRVGESAVHFECKLSQRHEIINKAGVTTATVVFGEVVKVWAAKGVCDENGAGEGKPTIKFDNYRALARLGGNTYGRVTSTFDLDRP 256          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: C1N2T0_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N2T0_MICPC)

HSP 1 Score: 237 bits (604), Expect = 1.430e-73
Identity = 114/207 (55.07%), Postives = 144/207 (69.57%), Query Frame = 1
Query:  274 VQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            +  DP +LKSCYPLMIS+VVPRPIA  S+ + DG  NL+PFSY   + HDPP +  S CR   G+KKD+  NIE   EFVV +MS+WFV AANH+CG+F  E DE    GLT VPS +V PPRV+ESA  MECK++H++D+ N +G +T T ++GEVVMFH+  H    N   EGKP V      P+ RLGG+TY R+GS +DLPRP
Sbjct:    2 LPFDPKDLKSCYPLMISAVVPRPIAFVSSLSADGVGNLSPFSYATVISHDPPCVMFSACRKPGGAKKDTWANIEATKEFVVCVMSEWFVNAANHTCGNFDAEDDEFDLSGLTRVPSAKVKPPRVKESAFHMECKLRHSYDVTNADGVVTATAIVGEVVMFHI--HEAVANVEWEGKPRVDMARYAPVCRLGGDTYGRVGSGYDLPRP 206          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A2P6VCT5_9CHLO (Flavin reductase-FMN-binding domain containing n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCT5_9CHLO)

HSP 1 Score: 232 bits (591), Expect = 2.200e-70
Identity = 123/233 (52.79%), Postives = 154/233 (66.09%), Query Frame = 1
Query:  208 ATTDPDWAPPKKQPPPGGNKGHVQVDPSELKS--CYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSIC--RNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            AT  P W PP KQP P  +     VDPS+L S   YPL+IS++VPRPIA  STQ+  G  NLAPFSYFN + H PP + +     R  +  +KD+L+NI   GEFVV IMS+WFVEAANH CG+F    DEM   GLTP PSV+V PPRV ESA+ MEC ++H +++ N  GD+T T+V+GEVVM HV   +   + +G  K  V  +   P+SRLGGNTYAR   +FDLPRP
Sbjct:   56 ATPHPGWHPPLKQPAPFASNEMRAVDPSQLPSDVLYPLIISAIVPRPIAFVSTQSAAGEGNLAPFSYFNVVAHAPPHVVIGFASSRLRSHGRKDTLVNILETGEFVVNIMSEWFVEAANHCCGNFDYGEDEMQLSGLTPRPSVKVRPPRVAESAVHMECLLRHNYEVKNAAGDVTGTIVIGEVVMMHVHEGVAGRSPSG--KLVVDIEKYKPVSRLGGNTYARTSGLFDLPRP 286          
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A7S1HEZ1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ1_HEMAN)

HSP 1 Score: 231 bits (588), Expect = 2.680e-70
Identity = 123/239 (51.46%), Postives = 152/239 (63.60%), Query Frame = 1
Query:  196 VVETATTDPDWAPPKKQPPPGGNKGHVQVDPS--ELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRN----GNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894
            +   +    +W PP+ QP P    G   +DPS  E  + YPL ISSVVPRPIALTST +  G  NL+PFSYFN + H PPTLA+ ICR     G GSKKD+  NIE  GEFVV IMSDWF+EAANH+CG F PE +EM   GLTP+PSV V PPRV ESA  MEC++K    + +  G  TT +V+G VVMFHV   +L +  +G    TV    L  + R+GGN Y R+  +F+L RP
Sbjct:   34 ITRVSPPHTEWKPPEPQPSPFAQMGFKSLDPSSKETGNLYPLCISSVVPRPIALTSTLSAAGVQNLSPFSYFNILSHKPPTLAIGICRKPGLEGEGSKKDTFANIEATGEFVVNIMSDWFIEAANHTCGDFVPEDNEMDLAGLTPLPSVVVKPPRVGESAFHMECRLKQIIPLSDDEGRPTTEIVVGTVVMFHVNEGVLTQTPSGS--HTVDVARLRALGRMGGNDYGRVTEVFELARP 270          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1F6_9PHAE5.540e-13470.07Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
D7G8R2_ECTSI5.550e-10979.79Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
A0A8J6C7I8_DIALT1.940e-8250.75Flavin_Reduct domain-containing protein n=2 Tax=Di... [more]
A0A7S4C094_CHRCT5.140e-8256.33Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
L1IE62_GUITC5.240e-8153.59Flavin_Reduct domain-containing protein n=2 Tax=Gu... [more]
A0A835ZDF3_9STRA1.740e-8053.36Flavin_Reduct domain-containing protein n=1 Tax=Tr... [more]
A0A7S0L4A2_9EUKA3.470e-7955.69Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
C1N2T0_MICPC1.430e-7355.07Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A2P6VCT5_9CHLO2.200e-7052.79Flavin reductase-FMN-binding domain containing n=1... [more]
A0A7S1HEZ1_HEMAN2.680e-7051.46Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2911174..2915777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.9
Seed ortholog evalue2.3e-87
Seed eggNOG ortholog2880.D7G8R2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Flavin reductase like domain
EggNOG OGs2CXSN@1,2RZGA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1153
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.617.1prot_C-linearis_contig10.617.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2911418..2915747 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927346.8451288-UTR-C-linearis_contig10:2911173..29114171622927346.8451288-UTR-C-linearis_contig10:2911173..2911417Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2911174..2911417 -
1690879642.2449799-UTR-C-linearis_contig10:2911173..29114171690879642.2449799-UTR-C-linearis_contig10:2911173..2911417Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2911174..2911417 -
1622927346.9161403-UTR-C-linearis_contig10:2915747..29157771622927346.9161403-UTR-C-linearis_contig10:2915747..2915777Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2915748..2915777 -
1690879642.329341-UTR-C-linearis_contig10:2915747..29157771690879642.329341-UTR-C-linearis_contig10:2915747..2915777Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2915748..2915777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927346.8566058-CDS-C-linearis_contig10:2911417..29115851622927346.8566058-CDS-C-linearis_contig10:2911417..2911585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2911418..2911585 -
1690879642.2638276-CDS-C-linearis_contig10:2911417..29115851690879642.2638276-CDS-C-linearis_contig10:2911417..2911585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2911418..2911585 -
1622927346.8657084-CDS-C-linearis_contig10:2911948..29120141622927346.8657084-CDS-C-linearis_contig10:2911948..2912014Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2911949..2912014 -
1690879642.2724652-CDS-C-linearis_contig10:2911948..29120141690879642.2724652-CDS-C-linearis_contig10:2911948..2912014Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2911949..2912014 -
1622927346.8762429-CDS-C-linearis_contig10:2912301..29124731622927346.8762429-CDS-C-linearis_contig10:2912301..2912473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2912302..2912473 -
1690879642.2811308-CDS-C-linearis_contig10:2912301..29124731690879642.2811308-CDS-C-linearis_contig10:2912301..2912473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2912302..2912473 -
1622927346.8875382-CDS-C-linearis_contig10:2912741..29129161622927346.8875382-CDS-C-linearis_contig10:2912741..2912916Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2912742..2912916 -
1690879642.2903557-CDS-C-linearis_contig10:2912741..29129161690879642.2903557-CDS-C-linearis_contig10:2912741..2912916Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2912742..2912916 -
1622927346.8985803-CDS-C-linearis_contig10:2915266..29153261622927346.8985803-CDS-C-linearis_contig10:2915266..2915326Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2915267..2915326 -
1690879642.3004286-CDS-C-linearis_contig10:2915266..29153261690879642.3004286-CDS-C-linearis_contig10:2915266..2915326Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2915267..2915326 -
1622927346.907971-CDS-C-linearis_contig10:2915509..29157471622927346.907971-CDS-C-linearis_contig10:2915509..2915747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2915510..2915747 -
1690879642.3112168-CDS-C-linearis_contig10:2915509..29157471690879642.3112168-CDS-C-linearis_contig10:2915509..2915747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2915510..2915747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.617.1

>prot_C-linearis_contig10.617.1 ID=prot_C-linearis_contig10.617.1|Name=mRNA_C-linearis_contig10.617.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp
MRGVLTPTARKIMAQRAQLKNSAAWLVAGGGVCVGLGYCLARRTLLSTAR
RLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSV
VPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDS
LINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRV
APPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKE
NGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRPRVTK*
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mRNA from alignment at C-linearis_contig10:2911174..2915777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.617.1 ID=mRNA_C-linearis_contig10.617.1|Name=mRNA_C-linearis_contig10.617.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4604bp|location=Sequence derived from alignment at C-linearis_contig10:2911174..2915777- (Chordaria linearis ClinC8C monoicous)
CTCCCCGCAGCCAGCGCCGAGCTGCGCACAATGAGAGGAGTTCTGACCCC GACTGCAAGAAAGATCATGGCGCAGAGGGCGCAGCTGAAAAACTCAGCAG CGTGGCTGGTGGCCGGCGGCGGTGTATGCGTAGGCCTTGGGTACTGCCTG GCCAGAAGAACGCTTCTATCCACAGCTCGCCGTCTCCGCGGCGACGTTGT GGAGACAGCCACGACGGATCCGGACTGGGCTCCTCCAAAAAAACAGCCTC CACCCGGAGGAAACAAAGGTGAAGGGCGTGTTTGGGTGTTTGGGTGCGTT TGTCCATGCCTTAACTCTCGTCGCGTTTCTACCTCTCTCAAGCCACACCC ATGGTCTTCCTATGTTCATCTCGCATGTACTGGTGGTAGCGTTTAGCGGC ATGGATGGGTGTTCTTCTCACCTTCCCCCCTCATCCCCGAACGCACGACA GGCCACGTCCAAGTCGACCCGAGTGAATTGAAAAGCTGCTACCCCCTCAT GATTAGCTCCGGTAAGGGTGATCGAAGCGTTGGTTCTGCTTTCAGAATGC GAGCACTATGATGACTATCCGCGTTCCTCTTCAGCCGCTTTTTTGCCTCA CAAAACGGCCGATTGCCGATTCCTGTTGTATTATTGTGCCCGCATTCTGA TCACTTGATTAATTAAGGGGATGGACGCTAGCCAGGAGAAAGATTTTCAT ACTAAATCCTACGGTATATAATAAGGCCGATAAAACACCAAAAGCGCGTA GCGTGTTAGGAGTCAGAAGGTGTGAGGCGTGTTCGCATGCTTATATCTGC TGCTGTGGCGGAGTTGTCGAGAGTCGCAGCAGTAGTAGTGCAAAACTCCG CAAATCTGGGCCGACGATAGCAAACATCGATTGCCGTACTCGCTACCACA GACACCAACCTCGTGAAATGCGGGTCCACAGCAGTAGCTCCTACCACTAG CTGCTGCTGAGGGCCCGTAGATGAGGAGGTTGAGGTATGTGGCGGCGAGC ACAGCAATCCGTGTTTGCTGTCGTCGGCCCAGATTTGCGGAGTTTTGGCC TGCTGCTGCGACTCTCGATAACTCCGCACCAGCAGCAGATATAAGCATGC GAACACGTCTCACACCTTCTCCATGGTGTCCTCTACTGATATCATGCACG GAACCGGGACTCCACACAACCCACAACTTGTTTGGATGCCCGCGATGTTG CCTGTTTTGTCTTGATTTTTGAATCGGCGAAAAAATATCTTGATTCCAGA AGAGGTGGTTGGAGGTAGACCACGTAATATGTATGTAAAGACCAGCCCGG TTCGCCGCTGGGTGAGCGAATCAACACGTCTCTTCTTGCGCAACCCTTCC CTACTGATCTGGTGGATCTGCTGTGTGGTTGATGTGTGCTGATTCGACTA TTTTCAAAATCGCTCATTCTCAAAGGAGATTGCATTCATCCCCTTAAAGT ATTGGATTGGATGAGATCCTCCTGCCTCGGCTGGTGGTCCTATATACCCC AACTTCGTTGTCTTCATACCCGCTTGCTATCCTACCATCGTCCGAGTATT TCCTTCATCCCATCTATTGCCGGTCGCCCCGGTGGTCTAGTTGTAGTTGG TAAACCGCACACCTTCTAGCGCCCAGGTCACGAGTTCGAATCCCGGCGTA TGCGATCTTTTCTCAAAACAAAAACATTGAGTTTTTCTCTCAAGTACGTC CCTGGTTGTGGAAAGCGCTAGTCGTGTGTACACAGAGGGAAGAGATTGCC GCGCTCTTCTCGCATTAAAAATCAAAGGCGAAGCACCGCAGGAGGGGAGG GTGGGGGGGCTCAGGGAGAGGAACCCTTCTGTGTGACCACGGGCTAGAGC TCTGGTTATACGGAGTGTATGTGAAGAAAAAATATATAGACTATATATAT ATCCACCCAAACTCCGTTGCGCCTTACGCTTCTTAGAAGACGTCGGCTTA CAGCACGCCGCATACATGACCTGGAACGCAGCCGCCGTAGGCGCCGCATC CGCCGCCTGATCGTCTACTTCCACGTCTGGCGCTGGCGCGATTTCCTGCT CGCTACCGCGCGTCTGGCCTTCCCCTCGCGCGCCAGCGCCTTCCGAAACG CCCCCGCCTAGTCCACGGTGTGGGCGCCGGCCTCGATGTCCCGCCCCGCC TGCAGGGCCTGCCCATAGTCAGGCTGGCCCACGATGGGGGCGTAGCTGGT GACGAGAGGGCCACACGCCATGTTGATGTCGTCGAAGGGCATATCCCCCA GGGATTTTCCCCCCGCGACCACGACGAGGCTGGTGTCGATCCCGGGCTCG CTGGTAGGGAGCCGCCCCAGTTTACGCCAGATGGACAGCTCCTCGACATC CTCGTCGATGGGCACAAGAACTGCCTTGGCCTCATCCGGCGGGGACGCAG GCGGCGCCGGCGCCAGCCGCCGAAGGAGCGGCTGACGCCGTGGCAGGAGT CGACCCACGCCTACGGCGAGGCGCAGTAGCGGGAGTCGGAGCCGCGGGCG GCGGGAGACCGCCGGCTGCGGCCGCGGCCGCACGTGTTGTCGCCATTAAT CTTCTCGAATAATGTTCATCTTGGGTTTTAACCCGTTTGTATAGGGAGGC TTGAAGACAATGATCAGGGGGGTCTAATTTTCAGTCATGGGGTTCCGCGT ATCTTGGCTATAGCCGTGCCGCTTCAGCCCTGTCTGCGTTGCCCCAAAAT TTACCTTGGAGCACCGCCGTGCACGCGATCGGTCTTCACACAGCAAAAGA GCGTCGCTCCGGCGTGTAACATGGAGTACGAGACAGCGGCGCACTCTGCC GCCTTTGCTTAACCCTGACTTACACTACCCTTGACTGCGTTTGTGTGCCG CTCTGGCACAGTCGTTCCAAGGCCAATCGCCTTGACGTCAACACAAGCGC CCGACGGTACTGTAAACCTGGCGCCGTTCTCCTATTTCAACACCATGGGC CATGATCCGCCCACCCTAGCCGTTTCGATTTGCCGGAATGGGAATGGATC GAAGAAGGATAGCCTGATCAACATTGAGACGAACGGGTGCGTCGCGACTA AATGTATTTACGTACAGGGACGCACAGAGTCCCCCACAACCATGCAAGAG TTCTAGAGCTGTCATACTGGCAATAGTTCTTAAACAGTTGAGGGACTTCT CATGGGCTCACAAACCAGAGAGCGAGGCGCGCGGAGATGTGCCAGATATC TGAAGAGGTATGTCAATAAAAAAAAATCTGGAGATGATGGTTACTGATTT ATTTTAACTGTCGCTTGTCGGTCCGCCCGGTGCCACTCTTTTCTTTTCGT GCAGCGAATTCGTCGTCGCTATCATGAGCGATTGGTTTGTCGAAGCTGCG AATCACTCATGCGGTAGCTTCCCCCCTGAGGTGGACGAGATGGCAACCGT AGGCCTAACCCCTGTACCAAGCGTTCGCGTCGCCCCTCCGAGAGTTGAGG AGTCGGCCATTTCAATGGAGTGCAAGGTGCATGCGGTATTAGCTGCTGTG TTGCTCGTGAGGCACAGCGTACATAGGGGGTCAAGAACCCATGTTGTTTT AGGGGAATGTGCGTCACACTCTGTACTGGAAACATCCGTAGAGGTGAAGT GCTAAGCAGCGAAACGAGGCGCTCACAGCGTACTTTTTCGTTTCCAACGC GCATCTCGATTGATTTATTCTCAGTCACTCTACTTGTTGAGGTCAAGTCC TTGATTTTTGTGGGAGTTACGTGCTCTACAATTGATGCCGTTACTACCCT CTCTTTCGGACAGGTGAAACACACCCACGACATTGTCAACAAGAACGGAG ATATTACGACAACGGTCGTGCTCGGCGAAGTAAGTGTACTAGGGTGCATG CCATAGTTTTCACCAGTCAAACAATGCACGACCCAAGTGTTGTTGTGGTA CAGAGTACCATTGTTAGGGAAACAACTTGCTACACATGTAAAAATAGTCA GGCGGTGGAACACGTTTTGTGTGTCATCTAGGCCGAGGGGCTTCGACTTG GAAAACGGGCGGTATTTCACGCCAATTGCTCGCTAGGAATATCATCAGTT GTTCATGCCACGCGTTTGAGGAAGCCTATTCGATGACGGCACTCGGGGCT TAGCGATAAAAACGTGTTCAATTGTTCGCCTCTTACTCGATACGACCTTG ACGCGCGCCCTCGCGTGTGCCCTCTGATGCGGATGCACGCAGGTGGTGAT GTTCCACGTGTTTCCCCATCTGTTGAAGGAAAACGGCGCCGGCGAGGGCA AACCTACCGTCAGCAGTAAGGGTCTGTTTCCGATCTCGCGGCTCGGAGGA AACACCTACGCTCGGTTAGGCTCCATGTTTGACCTCCCCCGCCCACGCGT AACGAAATAGACTAGGCCACCGACAAGGAATGCACTCCTGCTGTACGGTG TGCGCAACATCCTTGTTTCGTTCTGGTTTTATGACCCGGAAAAGGGCGTT GAGTGGAGTCCTTGGCAGCATCTTGCCGACGAGGAGTGATTTGGGGTTTG AGTGGTGTGTTCGTCAACTAGTGATCCTTAACTTTCAACACCATTCCCTG AGCTTGCAGCATGGTTAGTGAGTCGATGAACGTGGAGGATAGTTGAAGCG TTCC
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Coding sequence (CDS) from alignment at C-linearis_contig10:2911174..2915777-

>mRNA_C-linearis_contig10.617.1 ID=mRNA_C-linearis_contig10.617.1|Name=mRNA_C-linearis_contig10.617.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig10:2911174..2915777- (Chordaria linearis ClinC8C monoicous)
ATGAGAGGAGTTCTGACCCCGACTGCAAGAAAGATCATGGCGCAGAGGGC
GCAGCTGAAAAACTCAGCAGCGTGGCTGGTGGCCGGCGGCGGTGTATGCG
TAGGCCTTGGGTACTGCCTGGCCAGAAGAACGCTTCTATCCACAGCTCGC
CGTCTCCGCGGCGACGTTGTGGAGACAGCCACGACGGATCCGGACTGGGC
TCCTCCAAAAAAACAGCCTCCACCCGGAGGAAACAAAGATGAGAGGAGTT
CTGACCCCGACTGCAAGAAAGATCATGGCGCAGAGGGCGCAGCTGAAAAA
CTCAGCAGCGTGGCTGGTGGCCGGCGGCGGTGTATGCGTAGGCCTTGGGT
ACTGCCTGGCCAGAAGAACGCTTCTATCCACAGCTCGCCGTCTCCGCGGC
GACGTTGTGGAGACAGCCACGACGGATCCGGACTGGGCTCCTCCAAAAAA
ACAGCCTCCACCCGGAGGAAACAAAGGCCACGTCCAAGTCGACCCGAGTG
AATTGAAAAGCTGCTACCCCCTCATGATTAGCTCCGGCCACGTCCAAGTC
GACCCGAGTGAATTGAAAAGCTGCTACCCCCTCATGATTAGCTCCGTCGT
TCCAAGGCCAATCGCCTTGACGTCAACACAAGCGCCCGACGGTACTGTAA
ACCTGGCGCCGTTCTCCTATTTCAACACCATGGGCCATGATCCGCCCACC
CTAGCCGTTTCGATTTGCCGGAATGGGAATGGATCGAAGAAGGATAGCCT
GATCAACATTGAGACGAACGGTCGTTCCAAGGCCAATCGCCTTGACGTCA
ACACAAGCGCCCGACGGTACTGTAAACCTGGCGCCGTTCTCCTATTTCAA
CACCATGGGCCATGATCCGCCCACCCTAGCCGTTTCGATTTGCCGGAATG
GGAATGGATCGAAGAAGGATAGCCTGATCAACATTGAGACGAACGGCGAA
TTCGTCGTCGCTATCATGAGCGATTGGTTTGTCGAAGCTGCGAATCACTC
ATGCGGTAGCTTCCCCCCTGAGGTGGACGAGATGGCAACCGTAGGCCTAA
CCCCTGTACCAAGCGTTCGCGTCGCCCCTCCGAGAGTTGAGGAGTCGGCC
ATTTCAATGGAGTGCAAGCGAATTCGTCGTCGCTATCATGAGCGATTGGT
TTGTCGAAGCTGCGAATCACTCATGCGGTAGCTTCCCCCCTGAGGTGGAC
GAGATGGCAACCGTAGGCCTAACCCCTGTACCAAGCGTTCGCGTCGCCCC
TCCGAGAGTTGAGGAGTCGGCCATTTCAATGGAGTGCAAGGTGAAACACA
CCCACGACATTGTCAACAAGAACGGAGATATTACGACAACGGTCGTGCTC
GGCGAAGTGAAACACACCCACGACATTGTCAACAAGAACGGAGATATTAC
GACAACGGTCGTGCTCGGCGAAGTGGTGATGTTCCACGTGTTTCCCCATC
TGTTGAAGGAAAACGGCGCCGGCGAGGGCAAACCTACCGTCAGCAGTAAG
GGTCTGTTTCCGATCTCGCGGCTCGGAGGAAACACCTACGCTCGGTTAGG
CTCCATGTTTGACCTCCCCCGCCCACGCGTAACGAAATAGGTGGTGATGT
TCCACGTGTTTCCCCATCTGTTGAAGGAAAACGGCGCCGGCGAGGGCAAA
CCTACCGTCAGCAGTAAGGGTCTGTTTCCGATCTCGCGGCTCGGAGGAAA
CACCTACGCTCGGTTAGGCTCCATGTTTGACCTCCCCCGCCCACGCGTAA
CGAAATAG
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