mRNA_C-linearis_contig10.617.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A6H5L1F6_9PHAE (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F6_9PHAE) HSP 1 Score: 393 bits (1010), Expect = 5.540e-134 Identity = 192/274 (70.07%), Postives = 227/274 (82.85%), Query Frame = 1 Query: 94 SAAWLVAGGGVCVGLGYCLARRTLLSTARRLRGDVVETA--TTDPDWAPPKKQPPPGG-NKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRPRVTK 906 S+ W+V G GV +G+GY L ++RR R ++ + +T P W P KQPPPGG + GHV++DP +LKSCY LMISSVVPRPIALTST APDGTVN APFSYFNT+GHDPPTLAVS+CRNGNGSKKD+L+N+ +GEFVV+IMSDWFVEAANH+CGSFPPEVDEM GLTP+ S VAPPR++ESA++MECKV+HT+DIVN GD+TTTVV GEVVMFHVF HLLKENGAGEGKPTV+ +GL P+SRLGGNTY RLGS+FD+ RPRV K Sbjct: 17 SSGWVVLGCGVGMGVGYLL-------SSRRSRRKTLDRSNLSTHPSWIPGDKQPPPGGEDTGHVRIDPRDLKSCYSLMISSVVPRPIALTSTLAPDGTVNCAPFSYFNTVGHDPPTLAVSVCRNGNGSKKDTLVNMLASGEFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKVRHTYDIVNSKGDVTTTVVFGEVVMFHVFTHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDISRPRVGK 283
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: D7G8R2_ECTSI (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R2_ECTSI) HSP 1 Score: 328 bits (841), Expect = 5.550e-109 Identity = 154/193 (79.79%), Postives = 174/193 (90.16%), Query Frame = 1 Query: 328 VVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRPRVTK 906 VVPRPIALTST APDGTVN APFSYFNT+GHDPPTLAVS+CRNGNGSKKD+L+N+ +GEFVV+IMSDWFVEAANH+CGS PPEVDEM GLTP+ S VAPPR++ESA++MECKV+HT+DIVN GD+TTTVV GEVVMFHVF HLLKENGAGEGKPTV+ +GL PISRLGGNTY RLGS+FD+PRPRV K Sbjct: 49 VVPRPIALTSTLAPDGTVNCAPFSYFNTVGHDPPTLAVSVCRNGNGSKKDTLVNMLASGEFVVSIMSDWFVEAANHTCGSLPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKVRHTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPISRLGGNTYGRLGSVFDIPRPRVGK 241
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A8J6C7I8_DIALT (Flavin_Reduct domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C7I8_DIALT) HSP 1 Score: 262 bits (669), Expect = 1.940e-82 Identity = 136/268 (50.75%), Postives = 173/268 (64.55%), Query Frame = 1 Query: 97 AAWLVAGGGVCVGLGYCLARRTLLSTARRLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNG--SKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 AA L AG G C+ L RR A R + +A P WAPP+ PPP + HV +DP+ L SCYPLMIS+ VPRPIA ST++ NLAPFSY HDPPT+ S+ N KKD+L NI+ +GEFVV +MS+W+VEAANH CG+FP DE GLT VPS++V PPRV E+A++ ECK+ H H++ N G+++ T++LGEVVM H+ + + +GAG GKPTV L P+SRLGGNTY R S FDLPRP Sbjct: 9 AAALAAGCGACL-----LWRRLAARRAARAPARALASAPPHPLWAPPQPMPPPFADASHVSLDPTALASCYPLMISAFVPRPIAFVSTRSDKYGGNLAPFSYAGLFNHDPPTVGFSVVSNARAPDGKKDTLANIDESGEFVVHVMSEWYVEAANHCCGAFPRGEDEFDLSGLTRVPSLKVGPPRVGEAAVAFECKLAHRHEMRNAKGEVSATLILGEVVMIHLAAGVCELDGAGAGKPTVRFDALQPMSRLGGNTYGRTTSTFDLPRP 271
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A7S4C094_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C094_CHRCT) HSP 1 Score: 261 bits (666), Expect = 5.140e-82 Identity = 138/245 (56.33%), Postives = 163/245 (66.53%), Query Frame = 1 Query: 178 RRLRG-DVVETATTDPD----WAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGS-KKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 R+L G TAT P W P +KQP P K V +DP ELKSCYPL+ISS VPRPIA ST + G NLAPFSY + HDPPT+ V ICR N KKD+L NI+ GEFVV IMS+WFVEAANH C +F VDE GLT VPS RV PPRV ESA+ EC ++H H++VN +G +T+T+V+GEVVM H + +GAGEGKPT+ PISRLGG+TY R SMFDLPRP Sbjct: 25 RQLSGISAAYTATAGPPPHPRWNPGEKQPLPFQTKDFVALDPKELKSCYPLVISSYVPRPIAFVSTLSASGEGNLAPFSYSGVVAHDPPTIVVGICRGRNADGKKDTLANIDATGEFVVCIMSEWFVEAANHCCSAFERGVDEFDQSGLTRVPSTRVKPPRVGESAMHYECVLRHRHEVVNASGVVTSTMVVGEVVMMHAASAVCNVDGAGEGKPTIDFAKFQPISRLGGDTYGRTLSMFDLPRP 269
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: L1IE62_GUITC (Flavin_Reduct domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IE62_GUITC) HSP 1 Score: 258 bits (658), Expect = 5.240e-81 Identity = 127/237 (53.59%), Postives = 167/237 (70.46%), Query Frame = 1 Query: 181 RLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPR 891 R + VV+ + P W + QP P + HV + PSELKSCYPL+IS+ VPRPIAL S+++ G VN+AP+SY + HDPP + VS CR KD+L NI EFVV IMS+W+ E+ANH+CG+FPPEV+EM GLTP+PS ++PPRV ESA++ EC++ H +D+ N G +TTTVV+GE+V FHV +L+ NGAGEGKPTV+ L P+SRLGG TY R ++FDLPR Sbjct: 23 RRKRHVVKESPPHPSWKAGENQPIPYPGR-HVTLLPSELKSCYPLIISAYVPRPIALVSSKSAAGHVNVAPYSYTGAISHDPPAIVVSCCRKAGDVMKDTLANILDTKEFVVNIMSEWYAESANHTCGNFPPEVNEMDVAGLTPLPSKIISPPRVAESALNFECRLIHQYDMKNAQGKVTTTVVIGEIVAFHVHEGVLEMNGAGEGKPTVNFDALKPLSRLGGCTYGRTTAVFDLPR 258
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A835ZDF3_9STRA (Flavin_Reduct domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF3_9STRA) HSP 1 Score: 256 bits (655), Expect = 1.740e-80 Identity = 135/253 (53.36%), Postives = 164/253 (64.82%), Query Frame = 1 Query: 136 LGYCLARRTLLSTARRLRGDVVETATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 +G L RR L V T T P+W P + QP P G+ V +DP+ L SCY L+ISS VPRPIA S+ +G NLAPFSYFN + HDPP +A+ ICR G KKDSL NIE GEFVV+IMSDWF+E+ANH CG F +VDEMA GLT + V PP V ESAI+MECK+ H +++ N G TTTVV+G+VVMFHV +L G KPTV L PI+RLGGNTY + ++FDLPRP Sbjct: 12 VGTTLLRRLRAPVPAALLSQVTTTTTPHPEWQPGQNQPHPYGDSERVALDPAALASCYGLVISSGVPRPIAFVSSLDSEGRRNLAPFSYFNFVAHDPPLVAIGICRK-RGEKKDSLANIEARGEFVVSIMSDWFIESANHCCGDFSSDVDEMALSGLTAARAKIVEPPLVAESAINMECKLVHKYEVKNAAGTDTTTVVIGQVVMFHVLEAVLDTVTHGPTKPTVHFDKLRPIARLGGNTYGIVNTVFDLPRP 263
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A7S0L4A2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L4A2_9EUKA) HSP 1 Score: 253 bits (646), Expect = 3.470e-79 Identity = 137/246 (55.69%), Postives = 161/246 (65.45%), Query Frame = 1 Query: 181 RLRGDVVE------TATTDPDWAPPKKQPPPGGNKGHVQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGS--KKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 R+ GDV TA W P +KQP P G V++ PS+LKSCYPLMIS+ VPRPIA ST + G NLAPFSY + HDPPT+AVSICRNG + KKD+L NI+ GEFVV IMS+WFVEAANH+CGSF VDE GLT +PS V PPRV ESA+ ECK+ H+I+NK G T TVV GEVV + ENGAGEGKPT+ ++RLGGNTY R+ S FDL RP Sbjct: 12 RVEGDVASPTTVAVTAPPHEGWKPGEKQPLPFEG-GFVELIPSDLKSCYPLMISAYVPRPIAFVSTVSASGKGNLAPFSYSGCVAHDPPTIAVSICRNGRAADGKKDTLANIDDTGEFVVCIMSEWFVEAANHTCGSFERGVDEFDESGLTRLPSSIVKPPRVGESAVHFECKLSQRHEIINKAGVTTATVVFGEVVKVWAAKGVCDENGAGEGKPTIKFDNYRALARLGGNTYGRVTSTFDLDRP 256
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: C1N2T0_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N2T0_MICPC) HSP 1 Score: 237 bits (604), Expect = 1.430e-73 Identity = 114/207 (55.07%), Postives = 144/207 (69.57%), Query Frame = 1 Query: 274 VQVDPSELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 + DP +LKSCYPLMIS+VVPRPIA S+ + DG NL+PFSY + HDPP + S CR G+KKD+ NIE EFVV +MS+WFV AANH+CG+F E DE GLT VPS +V PPRV+ESA MECK++H++D+ N +G +T T ++GEVVMFH+ H N EGKP V P+ RLGG+TY R+GS +DLPRP Sbjct: 2 LPFDPKDLKSCYPLMISAVVPRPIAFVSSLSADGVGNLSPFSYATVISHDPPCVMFSACRKPGGAKKDTWANIEATKEFVVCVMSEWFVNAANHTCGNFDAEDDEFDLSGLTRVPSAKVKPPRVKESAFHMECKLRHSYDVTNADGVVTATAIVGEVVMFHI--HEAVANVEWEGKPRVDMARYAPVCRLGGDTYGRVGSGYDLPRP 206
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A2P6VCT5_9CHLO (Flavin reductase-FMN-binding domain containing n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCT5_9CHLO) HSP 1 Score: 232 bits (591), Expect = 2.200e-70 Identity = 123/233 (52.79%), Postives = 154/233 (66.09%), Query Frame = 1 Query: 208 ATTDPDWAPPKKQPPPGGNKGHVQVDPSELKS--CYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSIC--RNGNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 AT P W PP KQP P + VDPS+L S YPL+IS++VPRPIA STQ+ G NLAPFSYFN + H PP + + R + +KD+L+NI GEFVV IMS+WFVEAANH CG+F DEM GLTP PSV+V PPRV ESA+ MEC ++H +++ N GD+T T+V+GEVVM HV + + +G K V + P+SRLGGNTYAR +FDLPRP Sbjct: 56 ATPHPGWHPPLKQPAPFASNEMRAVDPSQLPSDVLYPLIISAIVPRPIAFVSTQSAAGEGNLAPFSYFNVVAHAPPHVVIGFASSRLRSHGRKDTLVNILETGEFVVNIMSEWFVEAANHCCGNFDYGEDEMQLSGLTPRPSVKVRPPRVAESAVHMECLLRHNYEVKNAAGDVTGTIVIGEVVMMHVHEGVAGRSPSG--KLVVDIEKYKPVSRLGGNTYARTSGLFDLPRP 286
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Match: A0A7S1HEZ1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ1_HEMAN) HSP 1 Score: 231 bits (588), Expect = 2.680e-70 Identity = 123/239 (51.46%), Postives = 152/239 (63.60%), Query Frame = 1 Query: 196 VVETATTDPDWAPPKKQPPPGGNKGHVQVDPS--ELKSCYPLMISSVVPRPIALTSTQAPDGTVNLAPFSYFNTMGHDPPTLAVSICRN----GNGSKKDSLINIETNGEFVVAIMSDWFVEAANHSCGSFPPEVDEMATVGLTPVPSVRVAPPRVEESAISMECKVKHTHDIVNKNGDITTTVVLGEVVMFHVFPHLLKENGAGEGKPTVSSKGLFPISRLGGNTYARLGSMFDLPRP 894 + + +W PP+ QP P G +DPS E + YPL ISSVVPRPIALTST + G NL+PFSYFN + H PPTLA+ ICR G GSKKD+ NIE GEFVV IMSDWF+EAANH+CG F PE +EM GLTP+PSV V PPRV ESA MEC++K + + G TT +V+G VVMFHV +L + +G TV L + R+GGN Y R+ +F+L RP Sbjct: 34 ITRVSPPHTEWKPPEPQPSPFAQMGFKSLDPSSKETGNLYPLCISSVVPRPIALTSTLSAAGVQNLSPFSYFNILSHKPPTLAIGICRKPGLEGEGSKKDTFANIEATGEFVVNIMSDWFIEAANHTCGDFVPEDNEMDLAGLTPLPSVVVKPPRVGESAFHMECRLKQIIPLSDDEGRPTTEIVVGTVVMFHVNEGVLTQTPSGS--HTVDVARLRALGRMGGNDYGRVTEVFELARP 270 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.617.1 >prot_C-linearis_contig10.617.1 ID=prot_C-linearis_contig10.617.1|Name=mRNA_C-linearis_contig10.617.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp MRGVLTPTARKIMAQRAQLKNSAAWLVAGGGVCVGLGYCLARRTLLSTARback to top mRNA from alignment at C-linearis_contig10:2911174..2915777- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.617.1 ID=mRNA_C-linearis_contig10.617.1|Name=mRNA_C-linearis_contig10.617.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4604bp|location=Sequence derived from alignment at C-linearis_contig10:2911174..2915777- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2911174..2915777- >mRNA_C-linearis_contig10.617.1 ID=mRNA_C-linearis_contig10.617.1|Name=mRNA_C-linearis_contig10.617.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig10:2911174..2915777- (Chordaria linearis ClinC8C monoicous)back to top |