mRNA_C-linearis_contig10.612.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.612.1 vs. uniprot
Match: D7G8S2_ECTSI (Molecular chaperone, heat shock protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S2_ECTSI) HSP 1 Score: 119 bits (298), Expect = 7.100e-26 Identity = 169/331 (51.06%), Postives = 185/331 (55.89%), Query Frame = 2 Query: 359 MVRCPVCDATGKTGTTLGFGGTVCGLCHGTCFLRSDPNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRHHGRCIKCNFSSLLSKLFLKCINCGGIGYSPEPQYLCPRCNSTGRFKGNNCXXXXXXXXXXXXXXXXXXXXXXXXVKRTFSLILGNVLCPTCNGQGYFTKVGGYTPPRXXXXXXXXXXXXXXXXXXXXX---NGRA-GGRP--RSEPRRRVKPRSIQTDGKRRQTISAGGVPGPQQQPLPLESLSQPRPDDEREGGGGSASEGR--VFNVGVAGPAKAADSKRR 1327
M RCPVC+ +GKTGTTLGFGGT C LCHG CFLR++PNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SS L K KCIN TGR +G C VKRT SL+LGN CPTC GQGYF G P R +GRA GGR SEPR RVK R+ D RR TIS +P P+QQ P + L++ D GG GS G VF +GV P K+ +RR
Sbjct: 1 MTRCPVCEGSGKTGTTLGFGGTTCALCHGKCFLRTEPNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSSSLYKYLFKCINXXXXXXXXXXXXXXXXXXXTGRLRGYGCTLCSGHGVIHHDVAACANCNGAGEVKRTLSLLLGNQTCPTCQGQGYFAIYGA--PARAMQLPNKGKRGREDEDDDQGGGSEDGRAEGGRVVGGSEPRPRVKQRTTPADKGRRLTIS--DLPRPEQQSPPAKPLARDDTDIRPNGGSGSGDGGEAGVFRLGVTTPVKSNGKRRR 327 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.612.1 >prot_C-linearis_contig10.612.1 ID=prot_C-linearis_contig10.612.1|Name=mRNA_C-linearis_contig10.612.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=338bp MLSPATMQMVRCPVCDATGKTGTTLGFGGTVCGLCHGTCFLRSDPNPCPNback to top mRNA from alignment at C-linearis_contig10:2878181..2882713+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.612.1 ID=mRNA_C-linearis_contig10.612.1|Name=mRNA_C-linearis_contig10.612.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4533bp|location=Sequence derived from alignment at C-linearis_contig10:2878181..2882713+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2878181..2882713+ >mRNA_C-linearis_contig10.612.1 ID=mRNA_C-linearis_contig10.612.1|Name=mRNA_C-linearis_contig10.612.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at C-linearis_contig10:2878181..2882713+ (Chordaria linearis ClinC8C monoicous)back to top |