mRNA_C-linearis_contig10.610.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.610.1
Unique NamemRNA_C-linearis_contig10.610.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.310e-51
Identity = 85/162 (52.47%), Postives = 106/162 (65.43%), Query Frame = 1
Query:    1 PRSPDTAGYDGGDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETAFSASN 486
            P +P    + GGDT A+  QM++ H S P R REF F AA AV    C HD+ P+ L  GL+RD    AA+ HPGLCG++    +AGV ++DV ATA +R V VT  VFRNQ C+DAA+ L A G GVQL R ECFT A RA+FPG+G  + W+ET FSA N
Sbjct:    7 PDTPLVEDFKGGDTLAVLRQMKEVHYSHPERVREFVFDAALAVGAGSCVHDDPPKALPRGLTRDQGVAAAKEHPGLCGFY----LAGVSYDDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFSAEN 164          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 8.800e-36
Identity = 65/135 (48.15%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   61 MRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWME 465
            M++  +S P R REF F A  A     C HD+  + L  GL+RD   EAA+ HPGLCG +    +AGV F+DV A A +R V VT  V  NQ C+DAA+ L   G GVQL R ECFT A RA+FPG+G  + W++
Sbjct:    1 MKEVRESHPGRVREFVFDAVVAAGAGSCLHDDPLKALPGGLTRDQGVEAAKEHPGLCGVY----LAGVSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGNGTPDQWVD 131          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.820e-33
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 1
Query:    7 SPDTAGYDGGDTSAIYVQM-------RQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIE 453
            +PD  G   G+T A + QM         A +   T  R FAF  A  V   YC HD AP+P+ + ++  A ++AA  HPGLCG + + I+A V  EDV    + R+       FRNQACYD A A++A G GVQL+R ECFTHA RA++PG+  +E
Sbjct:    3 TPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDV----TSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHARRAVWPGNEEME 153          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.580e-32
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   10 PDTAGYDGGDTSAIYVQM-------RQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWME 465
            P+  G   G+T A + QM         A +   T  R FAF  A  V   YC HD AP+P+ + ++  A ++AA  HPGLCG + + I+A V  EDV + +           FRNQACYD A A++AHG GVQL+R ECFTHA RA++PG+  + GW +
Sbjct:   73 PNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGS----TAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM-GWRQ 225          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.900e-32
Identity = 68/167 (40.72%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    7 SPDTAGYDGGDTSAIYVQM-------RQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETAFSASN 486
            +PD  GY  G+T A + Q          A +   T  R FAF  A  V   YC HD AP+P+ + ++  A ++AA  HPGLCG   + I+A V  EDV    + R+       FRNQACYD   A++  G GVQL+R +CFTHACRA++PG+  +E     AF  +N
Sbjct:    5 TPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDV----TSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEA--SVAFRETN 164          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.980e-27
Identity = 59/136 (43.38%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   34 GDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGD 441
            G+   ++ ++       P R RE   AAA AV   YC+HD  P PL        R+ A + H GLCG + +  +A +D   VE  A+     +T K  RNQACYDA  AL+A G GVQLRR ECFT ACRA++P D
Sbjct:   52 GNPLKVWEELLLIAAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAA--GAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 185          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.760e-26
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   34 GDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGD 441
            G+   ++ ++       P R RE   AAA AV   YC+HD  P PL        R+ A + H GLCG + +  +A +D   VE  A+     +T K  RNQACYDA  AL+A G GVQLRR ECFT AC A++P D
Sbjct:   22 GNPLKVWEELLLMAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAA--GAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDD 155          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.370e-23
Identity = 55/119 (46.22%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   85 PTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGD 441
            P   RE   AAA AV   YC+HD  P PL         + AA+ H G CG +    +A +D   V+  A+     +T K  RNQACYDA  AL+A G GVQLRR ECFT ACRA++P D
Sbjct:  173 PEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAA--GAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.990e-21
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  193 ARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETAFSA 480
            A + AA  HPGLCG + + I+A V  +DV A    R+       +RNQACYD   A++A G GVQL+R ECFTH CRA++PG G  +  +  AFS+
Sbjct:    8 AAKVAAAEHPGLCGVYHAHIIAAVKIQDVLA----RSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFSS 99          
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.040e-21
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  193 ARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETA 471
            A ++AA  HPGLCG + + I+A V  EDV    + R+       FRNQACYD A A++A G GVQL+R ECFTHA RA++PG+  +E  +  A
Sbjct:    8 AAKKAAAEHPGLCGVYHAHIIAAVRTEDV----TSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE1.310e-5152.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE8.800e-3648.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE4.820e-3342.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE1.580e-3242.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE1.900e-3240.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS7_9PHAE4.980e-2743.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE3.760e-2642.65Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE2.370e-2346.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE1.990e-2146.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE7.040e-2148.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2866645..2867960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927345.845899-CDS-C-linearis_contig10:2866644..28668031622927345.845899-CDS-C-linearis_contig10:2866644..2866803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2866645..2866803 -
1690879641.4048572-CDS-C-linearis_contig10:2866644..28668031690879641.4048572-CDS-C-linearis_contig10:2866644..2866803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2866645..2866803 -
1622927345.8583336-CDS-C-linearis_contig10:2867624..28679601622927345.8583336-CDS-C-linearis_contig10:2867624..2867960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2867625..2867960 -
1690879641.4143078-CDS-C-linearis_contig10:2867624..28679601690879641.4143078-CDS-C-linearis_contig10:2867624..2867960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2867625..2867960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.610.1prot_C-linearis_contig10.610.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2866645..2867960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.610.1

>prot_C-linearis_contig10.610.1 ID=prot_C-linearis_contig10.610.1|Name=mRNA_C-linearis_contig10.610.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=165bp
PRSPDTAGYDGGDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDH
DEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKR
NVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVI
EGWMETAFSASNNV*
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mRNA from alignment at C-linearis_contig10:2866645..2867960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.610.1 ID=mRNA_C-linearis_contig10.610.1|Name=mRNA_C-linearis_contig10.610.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1316bp|location=Sequence derived from alignment at C-linearis_contig10:2866645..2867960- (Chordaria linearis ClinC8C monoicous)
CCCAGGAGCCCCGACACAGCAGGCTATGATGGAGGCGACACGAGCGCGAT ATACGTGCAGATGCGACAGGCTCACGACAGCGACCCAACACGCGCCCGGG AGTTTGCTTTTGCGGCAGCGAACGCGGTGAGCAAGCTGTACTGCGACCAC GATGAAGCGCCACAGCCACTACAAGCAGGGCTGTCGCGTGATGCGCGCCG GGAAGCTGCTCGCGCTCACCCAGGCCTCTGCGGGTATTTCCAATCGGCTA TCGTTGCTGGCGTGGACTTCGAGGATGTGGAGGCAACAGCAAGCAAGCGA AATGTTCCGGTGACGTTGAAGGTGTTCAGGAACCAGGTGAGGGTGTTACC ACGTGCTTGGTGGCAACAATAATGGGCAAGGAGAACGCGCCTTCGTGCCT TTTGTGCTGTGTTACTTAGGTCACCCAAGAATGCTATACTCTGTGCCTTC GTGTGTGACAACAAATCAAAGAAGATGCTTGAGAAAACAGCTAGCTGTGC ATGCATGATCCAGAAGAGCACAGAGTATAGCAGCGTGATCTGTTTGTGTG CACGCATCACACAAGAGGCCGTCAGCCCCTAGTTGTTGCCAATGCTGCCC TACACATCTCTCAGCGAGCACTGCCTAGCTATCGTGACTCTCTCGGCAGC GTCTGTTGTGTAGGAAATGCCCCAGGGTTTCTCCGCGCCATGCTCTTGTA GACAGCACACATCATGTTTGTACGATATGGAACAAGGATGTTTTTTTTTC TGATGCAGCCCCTAAAAAACATCTCCGTATATAGCCTACTGCTGCTGTGT TTGTTTGTGTTCGAACGTGTTGTTTGACGAACCCATACATGTGCGTAGTG TTGGAACAGACGGGCAGTCGACGGGCTGCTTTGTAGGCTGTGCGTACATT TCTGAGGGTCGGACACTTTGATCACCATTTGGATATCCGCAGAGGTATTG GTACGAACGTCGTCGTTCGTCGTGCGTTACGTGCCCGAGTAAAACAACTT GTACCCTGTTTCGAGGTATGCACACCCCCCTTTAGTGCAGCGGCAACACG AACTTTGGTGATTCCCCGTACCAGTAATCAATGGTGCTCACTGCGCTCAC CCTCTCCTTTTCGTTTGTACTCTCTGTATCCACCTAACTTTTTGTGTCAC GGCCCAGGCCTGCTACGACGCCGCGAGGGCTCTCTCCGCCCACGGAGGTG GTGTCCAACTGCGCCGCTGCGAGTGTTTCACACATGCATGCCGGGCGATT TTCCCTGGCGATGGAGTTATCGAGGGGTGGATGGAGACCGCTTTCAGCGC CTCGAACAACGTGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2866645..2867960-

>mRNA_C-linearis_contig10.610.1 ID=mRNA_C-linearis_contig10.610.1|Name=mRNA_C-linearis_contig10.610.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at C-linearis_contig10:2866645..2867960- (Chordaria linearis ClinC8C monoicous)
CCCAGGAGCCCCGACACAGCAGGCTATGATGGAGGCGACACGAGCGCGAT
ATACGTGCAGATGCGACAGGCTCACGACAGCGACCCAACACGCGCCCGGG
AGTTTGCTTTTGCGGCAGCGAACGCGGTGAGCAAGCTGTACTGCGACCAC
GATGAAGCGCCACAGCCACTACAAGCAGGGCTGTCGCGTGATGCGCGCCG
GGAAGCTGCTCGCGCTCACCCAGGCCTCTGCGGGTATTTCCAATCGGCTA
TCGTTGCTGGCGTGGACTTCGAGGATGTGGAGGCAACAGCAAGCAAGCGA
AATGTTCCGGTGACGTTGAAGGTGTTCAGGAACCAGCCCAGGAGCCCCGA
CACAGCAGGCTATGATGGAGGCGACACGAGCGCGATATACGTGCAGATGC
GACAGGCTCACGACAGCGACCCAACACGCGCCCGGGAGTTTGCTTTTGCG
GCAGCGAACGCGGTGAGCAAGCTGTACTGCGACCACGATGAAGCGCCACA
GCCACTACAAGCAGGGCTGTCGCGTGATGCGCGCCGGGAAGCTGCTCGCG
CTCACCCAGGCCTCTGCGGGTATTTCCAATCGGCTATCGTTGCTGGCGTG
GACTTCGAGGATGTGGAGGCAACAGCAAGCAAGCGAAATGTTCCGGTGAC
GTTGAAGGTGTTCAGGAACCAGGCCTGCTACGACGCCGCGAGGGCTCTCT
CCGCCCACGGAGGTGGTGTCCAACTGCGCCGCTGCGAGTGTTTCACACAT
GCATGCCGGGCGATTTTCCCTGGCGATGGAGTTATCGAGGGGTGGATGGA
GACCGCTTTCAGCGCCTCGAACAACGTGTAGGCCTGCTACGACGCCGCGA
GGGCTCTCTCCGCCCACGGAGGTGGTGTCCAACTGCGCCGCTGCGAGTGT
TTCACACATGCATGCCGGGCGATTTTCCCTGGCGATGGAGTTATCGAGGG
GTGGATGGAGACCGCTTTCAGCGCCTCGAACAACGTGTAG
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