mRNA_C-linearis_contig10.610.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.310e-51 Identity = 85/162 (52.47%), Postives = 106/162 (65.43%), Query Frame = 1 Query: 1 PRSPDTAGYDGGDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETAFSASN 486 P +P + GGDT A+ QM++ H S P R REF F AA AV C HD+ P+ L GL+RD AA+ HPGLCG++ +AGV ++DV ATA +R V VT VFRNQ C+DAA+ L A G GVQL R ECFT A RA+FPG+G + W+ET FSA N Sbjct: 7 PDTPLVEDFKGGDTLAVLRQMKEVHYSHPERVREFVFDAALAVGAGSCVHDDPPKALPRGLTRDQGVAAAKEHPGLCGFY----LAGVSYDDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFSAEN 164
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE) HSP 1 Score: 130 bits (326), Expect = 8.800e-36 Identity = 65/135 (48.15%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 61 MRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWME 465 M++ +S P R REF F A A C HD+ + L GL+RD EAA+ HPGLCG + +AGV F+DV A A +R V VT V NQ C+DAA+ L G GVQL R ECFT A RA+FPG+G + W++ Sbjct: 1 MKEVRESHPGRVREFVFDAVVAAGAGSCLHDDPLKALPGGLTRDQGVEAAKEHPGLCGVY----LAGVSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGNGTPDQWVD 131
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE) HSP 1 Score: 124 bits (310), Expect = 4.820e-33 Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 1 Query: 7 SPDTAGYDGGDTSAIYVQM-------RQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIE 453 +PD G G+T A + QM A + T R FAF A V YC HD AP+P+ + ++ A ++AA HPGLCG + + I+A V EDV + R+ FRNQACYD A A++A G GVQL+R ECFTHA RA++PG+ +E Sbjct: 3 TPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDV----TSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHARRAVWPGNEEME 153
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.580e-32 Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 1 Query: 10 PDTAGYDGGDTSAIYVQM-------RQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWME 465 P+ G G+T A + QM A + T R FAF A V YC HD AP+P+ + ++ A ++AA HPGLCG + + I+A V EDV + + FRNQACYD A A++AHG GVQL+R ECFTHA RA++PG+ + GW + Sbjct: 73 PNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGS----TAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM-GWRQ 225
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.900e-32 Identity = 68/167 (40.72%), Postives = 92/167 (55.09%), Query Frame = 1 Query: 7 SPDTAGYDGGDTSAIYVQM-------RQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETAFSASN 486 +PD GY G+T A + Q A + T R FAF A V YC HD AP+P+ + ++ A ++AA HPGLCG + I+A V EDV + R+ FRNQACYD A++ G GVQL+R +CFTHACRA++PG+ +E AF +N Sbjct: 5 TPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDV----TSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEA--SVAFRETN 164
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.980e-27 Identity = 59/136 (43.38%), Postives = 76/136 (55.88%), Query Frame = 1 Query: 34 GDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGD 441 G+ ++ ++ P R RE AAA AV YC+HD P PL R+ A + H GLCG + + +A +D VE A+ +T K RNQACYDA AL+A G GVQLRR ECFT ACRA++P D Sbjct: 52 GNPLKVWEELLLIAAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAA--GAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 185
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.760e-26 Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 1 Query: 34 GDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGD 441 G+ ++ ++ P R RE AAA AV YC+HD P PL R+ A + H GLCG + + +A +D VE A+ +T K RNQACYDA AL+A G GVQLRR ECFT AC A++P D Sbjct: 22 GNPLKVWEELLLMAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAA--GAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDD 155
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.370e-23 Identity = 55/119 (46.22%), Postives = 67/119 (56.30%), Query Frame = 1 Query: 85 PTRAREFAFAAANAVSKLYCDHDEAPQPLQAGLSRDARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGD 441 P RE AAA AV YC+HD P PL + AA+ H G CG + +A +D V+ A+ +T K RNQACYDA AL+A G GVQLRR ECFT ACRA++P D Sbjct: 173 PEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAA--GAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.990e-21 Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 Query: 193 ARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETAFSA 480 A + AA HPGLCG + + I+A V +DV A R+ +RNQACYD A++A G GVQL+R ECFTH CRA++PG G + + AFS+ Sbjct: 8 AAKVAAAEHPGLCGVYHAHIIAAVKIQDVLA----RSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFSS 99
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 7.040e-21 Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 193 ARREAARAHPGLCGYFQSAIVAGVDFEDVEATASKRNVPVTLKVFRNQACYDAARALSAHGGGVQLRRCECFTHACRAIFPGDGVIEGWMETA 471 A ++AA HPGLCG + + I+A V EDV + R+ FRNQACYD A A++A G GVQL+R ECFTHA RA++PG+ +E + A Sbjct: 8 AAKKAAAEHPGLCGVYHAHIIAAVRTEDV----TSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.610.1 >prot_C-linearis_contig10.610.1 ID=prot_C-linearis_contig10.610.1|Name=mRNA_C-linearis_contig10.610.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=165bp PRSPDTAGYDGGDTSAIYVQMRQAHDSDPTRAREFAFAAANAVSKLYCDHback to top mRNA from alignment at C-linearis_contig10:2866645..2867960- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.610.1 ID=mRNA_C-linearis_contig10.610.1|Name=mRNA_C-linearis_contig10.610.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1316bp|location=Sequence derived from alignment at C-linearis_contig10:2866645..2867960- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2866645..2867960- >mRNA_C-linearis_contig10.610.1 ID=mRNA_C-linearis_contig10.610.1|Name=mRNA_C-linearis_contig10.610.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at C-linearis_contig10:2866645..2867960- (Chordaria linearis ClinC8C monoicous)back to top |