mRNA_C-linearis_contig10.603.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.603.1
Unique NamemRNA_C-linearis_contig10.603.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2822692..2823132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.603.1prot_C-linearis_contig10.603.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2822738..2822994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.3093836-UTR-C-linearis_contig10:2822691..28227371622927324.3093836-UTR-C-linearis_contig10:2822691..2822737Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2822692..2822737 -
1690879626.7380602-UTR-C-linearis_contig10:2822691..28227371690879626.7380602-UTR-C-linearis_contig10:2822691..2822737Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2822692..2822737 -
1622927324.3426943-UTR-C-linearis_contig10:2822994..28231321622927324.3426943-UTR-C-linearis_contig10:2822994..2823132Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2822995..2823132 -
1690879626.7797992-UTR-C-linearis_contig10:2822994..28231321690879626.7797992-UTR-C-linearis_contig10:2822994..2823132Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2822995..2823132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.3203647-CDS-C-linearis_contig10:2822737..28229041622927324.3203647-CDS-C-linearis_contig10:2822737..2822904Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2822738..2822904 -
1690879626.7589831-CDS-C-linearis_contig10:2822737..28229041690879626.7589831-CDS-C-linearis_contig10:2822737..2822904Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2822738..2822904 -
1622927324.3315165-CDS-C-linearis_contig10:2822921..28229941622927324.3315165-CDS-C-linearis_contig10:2822921..2822994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2822922..2822994 -
1690879626.7689564-CDS-C-linearis_contig10:2822921..28229941690879626.7689564-CDS-C-linearis_contig10:2822921..2822994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2822922..2822994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.603.1

>prot_C-linearis_contig10.603.1 ID=prot_C-linearis_contig10.603.1|Name=mRNA_C-linearis_contig10.603.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=80bp
MISNVAIGMWFVWTRLQAPSYRHQERERERERERENALCSTLTAVNTYGG
WLLSSERRKFGRLVYILCTTTRAVLTSPP*
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mRNA from alignment at C-linearis_contig10:2822692..2823132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.603.1 ID=mRNA_C-linearis_contig10.603.1|Name=mRNA_C-linearis_contig10.603.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at C-linearis_contig10:2822692..2823132- (Chordaria linearis ClinC8C monoicous)
TGCGGCACTTCTGTACATCTTGTCCATGTCAATACCTTGCACGGTTGGTG
TGAATGCGGGGTGCATCCCAAACACCGTGCGGGAGATTACAAGACTTTCG
CCTTGCTGTTAGGGCATGCATGGTGTTTGTGTATCGGCATGATCAGCAAC
GTGGCGATCGGAATGTGGTTTGTTTGGACCAGGCTACAAGCACCTAGCTA
CCGGCACCAGGGTGAACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAATGCACTATGTTCGACACTGACTGCTGTAAACACGTACG
GCGGCTGGCTACTTTCTAGTGAAAGAAGGAAATTTGGTCGATTGGTGTAC
ATATTATGTACAACAACCAGAGCCGTGCTCACCTCCCCCCCGTGAACCGC
AACGTAGGACAGGAGGATACCCCCTGACAGAATTATTCGAT
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Coding sequence (CDS) from alignment at C-linearis_contig10:2822692..2823132-

>mRNA_C-linearis_contig10.603.1 ID=mRNA_C-linearis_contig10.603.1|Name=mRNA_C-linearis_contig10.603.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at C-linearis_contig10:2822692..2823132- (Chordaria linearis ClinC8C monoicous)
ATGATCAGCAACGTGGCGATCGGAATGTGGTTTGTTTGGACCAGGCTACA
AGCACCTAGCTACCGGCACCAGGATGATCAGCAACGTGGCGATCGGAATG
TGGTTTGTTTGGACCAGGCTACAAGCACCTAGCTACCGGCACCAGGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCACTATGTTCGACACTGA
CTGCTGTAAACACGTACGGCGGCTGGCTACTTTCTAGTGAAAGAAGGAAA
TTTGGTCGATTGGTGTACATATTATGTACAACAACCAGAGCCGTGCTCAC
CTCCCCCCCGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGC
ACTATGTTCGACACTGACTGCTGTAAACACGTACGGCGGCTGGCTACTTT
CTAGTGAAAGAAGGAAATTTGGTCGATTGGTGTACATATTATGTACAACA
ACCAGAGCCGTGCTCACCTCCCCCCCGTGA
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