mRNA_C-linearis_contig10.602.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.602.1
Unique NamemRNA_C-linearis_contig10.602.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: D7G8Q2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q2_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 2.340e-183
Identity = 267/304 (87.83%), Postives = 280/304 (92.11%), Query Frame = 1
Query:   76 MANNSGATTLGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFRRGGPLRKEAVVEAATEAAPEVYAPAE 987
            MA+ S A TLGQIPDDEAWHRTIILPRDILDNPPSGEHE   V WE ESSHR WGC LLQEAG+LLRLPQVVMCTAQNLLQRFFYRKPLT FDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERR+G++P+ VIPPESLR LRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYL+VLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPD+PPWW LFNADMQEMGEICNTILALYHRPKV FLEPLC+ S+FRRGGPLR +AVV+       EVYAPA+
Sbjct:   43 MADGSVARTLGQIPDDEAWHRTIILPRDILDNPPSGEHE---VDWETESSHRIWGCELLQEAGVLLRLPQVVMCTAQNLLQRFFYRKPLTKFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRIGVDPAIVIPPESLRVLRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLRVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDNPPWWVLFNADMQEMGEICNTILALYHRPKVAFLEPLCDNSVFRRGGPLRIDAVVQ----NIQEVYAPAD 339          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A835YUR3_9STRA (Cyclin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR3_9STRA)

HSP 1 Score: 338 bits (868), Expect = 1.670e-106
Identity = 167/272 (61.40%), Postives = 211/272 (77.57%), Query Frame = 1
Query:  124 EAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEE--DPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRA-LRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFRRGGPLRK 930
            E WH  ++LP +IL NPPS +H    V WE E+ HR+WGC L+QEAGILLRLPQVVMCT Q LLQRF+YRK LT FDAFSVAMGC+LLA K+EE     + R VV+VFHRM+ RR G+    +    ++ A L+ EM+RVE +VLK+LGFGFYNIMDHPHKFILYY++VL  ++E   +QR W+Y+ND+LRTDL LR+R+EVIACAAIYMA+R+L ++LP  PPWW LFNA++ E+G+ICN ILALY +PKV +LEPL   S+F  GG +R+
Sbjct:    1 EPWHSVVLLPEEILANPPSKDHG---VDWETETQHRAWGCELIQEAGILLRLPQVVMCTGQTLLQRFYYRKSLTKFDAFSVAMGCVLLAAKLEEAIGHTRVRDVVMVFHRMYLRRRGLPLEFLELGGTVYAELKTEMIRVERYVLKDLGFGFYNIMDHPHKFILYYVRVLGWELEA--TQRVWSYLNDALRTDLCLRYRAEVIACAAIYMAARALRLRLPQSPPWWRLFNAELPEIGQICNAILALYKKPKVVWLEPLHSGSVFAPGGAVRR 267          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A7S4D4U7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4U7_HETAK)

HSP 1 Score: 298 bits (762), Expect = 7.590e-91
Identity = 152/283 (53.71%), Postives = 195/283 (68.90%), Query Frame = 1
Query:   73 GMANNSGATTLGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIP--PESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFRRG 915
            G AN     T  +    E WH    LP +ILDN PS   +   V WE E   R WGC L+QEAG+LLRLPQVVM T QNLLQRFFYR+ L  FDAF+VAMGC+ L+ K+EE P++ R ++ VFH + + R G EP + +    ++    + E++++E HVLKELGF FYNIMDHPHKFILYY+KVL  D    ++QRAW+YVNDSLRTDL LR  + VIACAAIYMA+R L + LP  PPWW LF+A ++++  IC+ ILALY   K  ++EPL E ++F+RG
Sbjct:   16 GAANGEVKGTPEEEKAPEPWHMVQTLPAEILDNSPS---KKDGVPWEQEYKFRVWGCELVQEAGVLLRLPQVVMATGQNLLQRFFYRRSLKRFDAFTVAMGCLFLSCKVEEKPKRLREILFVFHHISQVRRG-EPITPLELGAQTYMQWKSELIKMERHVLKELGFSFYNIMDHPHKFILYYIKVL--DGSSALAQRAWSYVNDSLRTDLCLRHGAAVIACAAIYMAARVLRVPLPRSPPWWELFSAQLRDVAAICDAILALYEMEKTPWMEPLSEANVFKRG 292          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: W7U1X8_9STRA (Ania-6a type cyclin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1X8_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.650e-79
Identity = 150/290 (51.72%), Postives = 186/290 (64.14%), Query Frame = 1
Query:  103 LGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTD-------------------FDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRA--LRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVE-------FLEPL 888
            L  +  D  WH  ++LPR +L   PS      E    +E  HR +GC L+QEAGILLR PQVVM TAQ L  RFFYR+ LT                    FDAF+VAMGC+ LA K+EE PR PR V+ VFH M  RR G+ PS ++   S+R   LR+ +L +E +VLKELGFGFY+IMDHPHKFILYY+K L  D    ++QRAWNY+NDSLR D  +RFR+E+IAC A+YMASR LG+KLPD PPW+ALF A ++EM  + N IL+LY     E       +LEPL
Sbjct:   33 LEDVSVDGEWHEVVLLPRHVLRESPSRRLGVPEA---VERRHRIFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRRALTSERAQDVPEPGPGKSPRVFLFDAFTVAMGCVFLASKLEEKPRAPRDVLFVFHHMCRRRRGLGPS-LLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTL--DGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLGVKLPDDPPWFALFGASLEEMRHVGNVILSLYREKDEEGEEAPLRWLEPL 316          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: F0YGC1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGC1_AURAN)

HSP 1 Score: 240 bits (613), Expect = 7.600e-71
Identity = 127/243 (52.26%), Postives = 168/243 (69.14%), Query Frame = 1
Query:  145 ILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLR--ALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHP--PWWALFNADMQEMGEICNTILALYHR 861
            +LP D+L+N PS   +   V+   E + R WGC L+QEAGILLRLPQVVMCT QN+ QRF+YR  L  FDAF  AMGC  LA KIEE P++ R  ++VFH  F  RV  + S+ +    +R    + E+++VE H+LKELGF FY I+DH HKFIL+Y+K+L+ D  G+++Q AW+Y+ND LRTD +LR+RSEV+ACAAIYMA+R L  KLPD P  PWW +F     ++  +   +LALY R
Sbjct:    2 LLPADMLENSPS---KRDGVSAADEYAQRVWGCELIQEAGILLRLPQVVMCTGQNIFQRFYYRVSLKRFDAFLSAMGCFFLACKIEEKPKRLRECLMVFH--FVYRVRTKSSATLELGGVRYNGWKHELVKVERHILKELGFSFY-IIDHSHKFILFYVKLLDCD--GELAQEAWSYLNDCLRTDAALRYRSEVLACAAIYMAARRLQHKLPDDPAAPWWEVFRVGKADLDAVVAAVLALYVR 236          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: F0WDA4_9STRA (CyclinL1 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WDA4_9STRA)

HSP 1 Score: 239 bits (611), Expect = 3.640e-69
Identity = 119/260 (45.77%), Postives = 170/260 (65.38%), Query Frame = 1
Query:  145 ILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERR----VGIEPSSV-IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFR 909
            +LP +IL NPPS   +   ++ ++E  HR WGC L+QEAG LL+LPQVVM TAQ +L RF+YRK L DFDAF V+  C+ LA K+EE P +   ++ VF+ +++RR      IE   + +  ++    RD M+ +E  +L +LGF  YN+M+H HK++LYY+K+L  D   +++Q+AW Y NDSLR DL  RF +  I C ++++A R L IKLPD+PPWW LF    +EM  I   IL LY R  +E+L+PL E + F+
Sbjct:   13 LLPEEILRNPPS---QRDGISSQVERDHRFWGCELIQEAGTLLKLPQVVMVTAQTILHRFYYRKSLRDFDAFRVSFACLFLAAKVEEVPTRISEILTVFYAIYKRRRWKETNIENQLLDLDGDTYCQWRDWMILLERQLLIDLGFSIYNVMEHAHKYVLYYIKIL--DGTKELAQKAWGYANDSLRVDLMTRFSAAAIGCGSLFLAGRVLQIKLPDNPPWWLLFEVSQEEMVTIAREILQLYTRNAIEWLDPLTEINPFQ 267          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: W2R3U0_PHYPN (Uncharacterized protein (Fragment) n=11 Tax=Phytophthora TaxID=4783 RepID=W2R3U0_PHYPN)

HSP 1 Score: 241 bits (614), Expect = 5.780e-69
Identity = 124/261 (47.51%), Postives = 178/261 (68.20%), Query Frame = 1
Query:  142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSV------IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906
            ++LP   L   PS E +   +  +IE  HRS+GC L+QEAG+LLRLPQVVM TAQ LLQRF+YRK L  FDAF VA+ C+ LA K+EE P++ + VV VF+ MF RR   + S+V      +   +    R  ++ VE  VL +LGF  Y++ +HPHK++LYY+KVL  D    ++Q+AW Y+NDSLRTDL +R++++VIACAAI++ASR  G+ LP++PPW+ LF+ D  ++  +   I+ LY + K+++LEPL E + F
Sbjct:   10 VVLPASSLARSPSLEDD---IKPDIERLHRSFGCELIQEAGVLLRLPQVVMATAQTLLQRFYYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIKDVVGVFYAMFRRRKW-QRSTVSQQLVDLDGATFSQWRMWLIMVERQVLIDLGFSIYSVTEHPHKYVLYYVKVL--DGSSALAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPENPPWYLLFDVDKTQLYAVSVVIMELYKQEKIQWLEPLTETNPF 264          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A6A3UY25_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UY25_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.190e-68
Identity = 121/260 (46.54%), Postives = 169/260 (65.00%), Query Frame = 1
Query:  142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSV-----IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906
            ++LP  +L   PS E    E    +E  HR++GC L+QEAG+LLRLPQVV+ TAQ LLQRFFYRK L  FDAF VA+ C+ LA K+EE P++ R V+ VF+ M  RR     S       +   +    R  ++ VE  VL +LGF  YN+  HPHKF+LYY+KVL  D    ++Q+AW Y+NDSLR DL +R+ ++VIACAAI++ASR   + LP+ PPW+ALF+ D  ++  +   I+ LY + ++E+LEPL + + F
Sbjct:   10 VVLPASVLARSPSREDGVSEA---VERLHRAFGCELIQEAGVLLRLPQVVLATAQTLLQRFFYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIRDVLAVFYAMLRRRKWKRSSVAQQLVDVDGATFAQWRMWLIMVERQVLIDLGFSVYNVAQHPHKFVLYYVKVL--DGSPQLAQQAWGYINDSLRADLCVRYSAQVIACAAIFLASRFQHVALPERPPWYALFDVDKTQLYAVSVAIMELYKQERIEWLEPLTDTNPF 264          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A8K1CU74_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU74_PYTOL)

HSP 1 Score: 246 bits (627), Expect = 3.330e-68
Identity = 131/264 (49.62%), Postives = 175/264 (66.29%), Query Frame = 1
Query:  142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVG---------IEPSSVIPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906
            ++LP  IL   PS   + G  A E E  HR WGC L++EAGILLRLPQVVM TAQ +LQRF+YRK L DFDAF VA+GC+ LA K+EE P++ R VV VF+ ++ RR           +EP S    +S     D ++ VE  +L +LGF  Y IM+HPHK+ILYY+K+L  D    ++Q+AW Y+NDSLR DL +R+R+EVIACAAI++ASR L +KLP  PPW+ LF+ D   + +    I+ LY R K+ +L+PL E + F
Sbjct:    9 VVLPEAILARSPS--QQDGVSAHE-ERDHRFWGCELIEEAGILLRLPQVVMVTAQTMLQRFYYRKSLRDFDAFRVAIGCLFLAAKVEEQPKRMREVVSVFYAIYRRRKWGKTRMTQQLLEPES----DSYYLWCDWLIMVERQILIDLGFSLYTIMEHPHKYILYYIKIL--DGSKALAQKAWGYLNDSLRVDLCVRYRAEVIACAAIFLASRMLQVKLPMSPPWFELFDVDETALLQASTVIMELYTRKKIVWLDPLTEVNPF 263          
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A225WJ87_9STRA (Cyclin-L1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WJ87_9STRA)

HSP 1 Score: 235 bits (600), Expect = 6.130e-68
Identity = 119/260 (45.77%), Postives = 173/260 (66.54%), Query Frame = 1
Query:  142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSV-----IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906
            ++LP   L   PS E     ++ + E  HRS+GC L+QEAG+LLRLPQVV+ TAQ LL RF+YRK L  FDAF VA+ C+ LA K+EE P++ + V+ VF+ M  RR     +       +   +    R  ++ VE  VL +LGF  YN+ +HPHK++LYY+KVL  D    ++Q+AW Y+NDSLRTDL +R++++VIACAAI++ASR  G+ LP++PPW++LF+ +  ++  +   I+ LY + KVE+LEPL E + F
Sbjct:    8 VVLPASSLQRSPSLEDG---ISSDTERLHRSFGCELIQEAGVLLRLPQVVLATAQTLLHRFYYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIKDVLGVFYAMLRRRKWRRTTVTQQLVDVDGATFSQWRMWLIMVERQVLIDLGFSVYNVTEHPHKYVLYYVKVL--DGSSTLAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPENPPWYSLFDVEKTQLYAVSVAIMQLYKQEKVEWLEPLTETNPF 262          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q2_ECTSI2.340e-18387.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUR3_9STRA1.670e-10661.40Cyclin-like protein (Fragment) n=1 Tax=Tribonema m... [more]
A0A7S4D4U7_HETAK7.590e-9153.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7U1X8_9STRA1.650e-7951.72Ania-6a type cyclin n=3 Tax=Monodopsidaceae TaxID=... [more]
F0YGC1_AURAN7.600e-7152.26Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0WDA4_9STRA3.640e-6945.77CyclinL1 putative n=1 Tax=Albugo laibachii Nc14 Ta... [more]
W2R3U0_PHYPN5.780e-6947.51Uncharacterized protein (Fragment) n=11 Tax=Phytop... [more]
A0A6A3UY25_9STRA1.190e-6846.54Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A8K1CU74_PYTOL3.330e-6849.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225WJ87_9STRA6.130e-6845.77Cyclin-L1 n=1 Tax=Phytophthora megakarya TaxID=479... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2818885..2822495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score547.7
Seed ortholog evalue5.5e-153
Seed eggNOG ortholog2880.D7G8Q2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5333@1,KOG0835@2759
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-22_002580.1
COG Functional cat.DKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2209
Cds size1509
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.602.1prot_C-linearis_contig10.602.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2819510..2822420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.7351422-UTR-C-linearis_contig10:2818884..28195091622927344.7351422-UTR-C-linearis_contig10:2818884..2819509Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2818885..2819509 -
1690879640.8609629-UTR-C-linearis_contig10:2818884..28195091690879640.8609629-UTR-C-linearis_contig10:2818884..2819509Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2818885..2819509 -
1622927344.7824206-UTR-C-linearis_contig10:2822420..28224951622927344.7824206-UTR-C-linearis_contig10:2822420..2822495Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2822421..2822495 -
1690879640.9177327-UTR-C-linearis_contig10:2822420..28224951690879640.9177327-UTR-C-linearis_contig10:2822420..2822495Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2822421..2822495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.7480602-CDS-C-linearis_contig10:2819509..28196661622927344.7480602-CDS-C-linearis_contig10:2819509..2819666Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2819510..2819666 -
1690879640.8743498-CDS-C-linearis_contig10:2819509..28196661690879640.8743498-CDS-C-linearis_contig10:2819509..2819666Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2819510..2819666 -
1622927344.7624269-CDS-C-linearis_contig10:2820158..28213101622927344.7624269-CDS-C-linearis_contig10:2820158..2821310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2820159..2821310 -
1690879640.8944445-CDS-C-linearis_contig10:2820158..28213101690879640.8944445-CDS-C-linearis_contig10:2820158..2821310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2820159..2821310 -
1622927344.7732956-CDS-C-linearis_contig10:2822220..28224201622927344.7732956-CDS-C-linearis_contig10:2822220..2822420Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2822221..2822420 -
1690879640.9058816-CDS-C-linearis_contig10:2822220..28224201690879640.9058816-CDS-C-linearis_contig10:2822220..2822420Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2822221..2822420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.602.1

>prot_C-linearis_contig10.602.1 ID=prot_C-linearis_contig10.602.1|Name=mRNA_C-linearis_contig10.602.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=503bp
MANNSGATTLGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESS
HRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMG
CMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRALRDEM
LRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVN
DSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMG
EICNTILALYHRPKVEFLEPLCEKSIFRRGGPLRKEAVVEAATEAAPEVY
APAEEEPVPSAPELAVPTPQESVGSAAVATESNAAATDATSPEAPVSSAP
ATSVRVPQSNGTSEPSTHKGPERGSESRSRSPGSRSAHSHRSHSTNRSAP
GLERDDGGDDQGRNDRSPERTQDRERDRKRPRESRRNRGDSRERARESYR
RSAIRESRRSRSRSRSRSRRDRKGDSRERGRGRDRDKERGDRRHESSRRI
RR*
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mRNA from alignment at C-linearis_contig10:2818885..2822495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.602.1 ID=mRNA_C-linearis_contig10.602.1|Name=mRNA_C-linearis_contig10.602.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3611bp|location=Sequence derived from alignment at C-linearis_contig10:2818885..2822495- (Chordaria linearis ClinC8C monoicous)
GTCGCCCAACGACAAGTTACGTGAAGTTTCGCCAGGCTCACGACGGACAC ACACAGCAGCAATAGTGAGGTAGGCATGGCGAACAACTCTGGGGCTACAA CTCTGGGGCAAATCCCTGACGATGAAGCATGGCACAGAACGATTATTCTT CCTCGCGACATCTTGGATAACCCACCCTCGGGAGAGCACGAGCACGGCGA GGTGGCCTGGGAAATAGAGTCCTCTCATCGCAGCTGGGGTTGCGGACTTC TCCAGGAGGCTGGAATCCTGCTGAGGTACGTCTTGTCTATTTCAGAGGGC CGGCTGCAGTTGATTTCATAAAACTTTCTCTCTCTTCCTCCGTCTCGCAA GTGTCTCCCCTCGTCTCTTCACACACCGGAACTCCCTACTCGCGCCCAAA CGAACACGGTGCGAAAGTAAAATGTTGTGTGTACGCAGCTTACTACGTAC CGTCTCATGGTTCAGCTACATTGTGTTTTATTGCTAACGGGAAGCAGACG CTCTCTTATCTAGGTTATACTGGAGCGGGGGGATCACAACATCACAACCG GTCGATCTGGCTCGCTGCCGATAGTGTAGATCTGGCGTAATTACTGGCGC ACATCCGGACTTATCATGAATGCTATCATAGCCCTGCTTTTGATTCTCTG TCTTGGTCGGGCGCGAGATATCCTAATCCACCATACCTTTGTGTAGGGTA GCCACGCACGCTACATGGCTCAAAATCGACTCCTTTCCCAAATGTTGCGG CCGGTCATTCGGCGAAAAATCGCTCCCTGTGTTGTACGGAATCCGGGCCC CAGGGTCGGTATGTGGCGACGTGTATGTTGGCCCGCTCAGATCTGATGCT AGGGTGGCCGCTCGAAGGCCGCCGAAGTAGCTAGGTATTCAACAGCAGAC GCTTGTAATGGCCACCCCCGGCTGCAGCAGTAGGGCCTGTGCATTGACTA AATTGAGATGGAGTACAGCGCCGGTCTGGGTCAGAAGTCCATCAGCGGTG TGCCGCATTTCGAGCCCAGACCAATCAACCTGCTTGTCCAAGAGTCGTCA CGCGTGGATTTGAGCTTCTTTGTTGCTGCTTTTCAGGGTATGCAATAGCT TGCACACACACCATCAACCAATCGTGAATCTATCATGGCATCTTATGAAG CCATTCCCCTCGCTCTCCGCGTTGATTTTTCGCAGGTTACCTCAGGTCGT GATGTGTACTGCACAGAACTTGCTTCAGCGATTCTTCTATCGCAAACCGC TGACCGATTTTGATGCTTTCAGCGTAGCGATGGGCTGCATGCTTCTTGCG ATGAAAATCGAAGAAGACCCACGGCAGCCGCGCGCGGTGGTGCTGGTTTT TCACCGCATGTTTGAACGGCGGGTAGGGATTGAACCCTCAAGCGTGATCC CACCCGAATCTCTGAGGGCTCTGCGTGACGAGATGCTGCGTGTTGAGCTC CATGTTCTGAAGGAGCTTGGTTTCGGGTTCTACAACATTATGGATCATCC CCACAAGTTCATTCTCTACTACCTTAAAGTGCTGGAGTTGGACATCGAAG GAGACGTGTCCCAGCGTGCTTGGAACTACGTGAACGACTCGCTTCGCACA GATCTGTCGCTGCGGTTCCGCTCGGAGGTAATAGCGTGCGCGGCAATCTA CATGGCTTCGCGCTCACTCGGCATCAAGCTTCCTGACCACCCACCATGGT GGGCCCTCTTCAACGCAGATATGCAAGAAATGGGAGAGATCTGTAATACT ATCTTGGCTCTTTATCACCGACCAAAAGTGGAGTTCTTGGAACCCCTTTG TGAGAAGAGCATCTTCAGGAGAGGAGGTCCGTTGCGAAAAGAGGCCGTCG TCGAAGCCGCTACTGAGGCCGCTCCGGAGGTCTATGCACCAGCAGAGGAG GAACCTGTCCCGTCCGCACCAGAACTAGCAGTTCCCACCCCACAGGAGTC TGTCGGATCAGCGGCAGTTGCCACCGAAAGCAATGCTGCTGCCACTGATG CCACTAGCCCTGAAGCACCGGTTTCATCTGCACCAGCTACGAGTGTGCGA GTTCCTCAGAGCAATGGCACGAGTGAACCCTCAACCCACAAAGGCCCGGA GAGAGGAAGCGAGAGTAGAAGTCGGAGTCCTGGGAGCAGATCTGCCCACA GCCATAGGAGTCACAGCACAAACCGCAGTGCACCGGGATTAGAACGTGAC GATGGGGGTGACGACCAAGGACGAAACGACCGTTCACCAGAAAGAACGCA GGATCGAGAGAGGGACCGAAAACGCCCGAGGGAATCCCGCCGTAACCGAG GCGATAGTAGAGAGAGGGCGAGAGAGAGTTACAGGAGGTGAGTTAGTTGA GTTGGCGCGTTAGTGTGTGCTCAGAAAGACGGGGCGAGGCACGTGACCAA GCTACGAATATAACGCAGAGTAGCCGAGTGCATGCGAAGGGTCTGCCCTT TGCTGTTGATTGGCTCCCACAATTGAGTCGGCATGGCCGTTGCTCACCGT GCACCATTGTGGCGATGCTCCGGGTCTCCGCTTCCTTGGCTGTTTGGCGT CTAGTCTAGTTACTTTGACCTCGGCTGCACTCAGTGGTTGCATTTCGTTG ATGGTTCTGCGTTGCATTGTTCGTGTATCGCGTTCTCAAATACGGACACA CCGATGTCCGCATGCGAGCGAACAGACGCAGCTTTCAACGTCGTTCTGAC TTCTAAATTCAAATGCAAGGGCACCCGATAATCTCTCTCTCACACACACA CTTCCCCCAAATGCCTTCAACCCGGTTACAAAAATCGACCAACTTCAACT CCCATCGGCAACTCGCTATTGCGAAGCAGGTCTGCCATAAGGGAATCAAG GCGCAGCCGGAGCCGAAGCCGTAGTCGCAGTCGTAGAGATCGAAAGGGTG ACAGCAGAGAGAGAGGACGTGGCCGAGACAGAGATAAAGAACGCGGGGAC AGGCGTCACGAATCGAGTAGGAGAATTCGAAGGTAGAGGGCCATCGGGAC GACCCCTTAGCAAATATTTTTGGTCTCTAGTGCCCTATAGATGTTGAGAG TTTGAATTTTATGGTTGTTCGTGTTGACCAACGGAACAGCAAGATGTTAG GCAACACCTCAACGGGTTGTGCAGTGGTTTGGCTATGGAGATCGGAGATC GGGCTTCATGCAGAAACTACTACGACCAGGGCGGAGTGTATGCTGGCCGC TTTCGATAGCCTTCTCGTCCATCCAGAGCAAGGGTCTGGGTACATGCGGC GGGCCCCATGCATTTGATCCTCTAGGCCGGGAGCCGCGACGAAAGATAAA TGCTTTGAAATACAGGTTTCCAATATCTGTCCTGACGCATGAGTGACCTG TTGACCTTGTTGGCTCTAGTCGGTGTTTTGCGATCACATGTGGCATGCGG TCAACTCGGTTTGTCGATAGACGTGCAAGTTCTGAATAATTTCGAGGAGA TGTATTCCAAGATCATCGCCAAGTGTGCAATGGCAGGAGTTGTAGAACGA CTAAACCCTCTGGGTTAATATGTCGACCAGGTACGCACGCGTACACTCGA GAACACCAAATTCTGTAATGCTTCATCGGAATGCACGATTGTGGTAGATG CACAACAAGGC
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Coding sequence (CDS) from alignment at C-linearis_contig10:2818885..2822495-

>mRNA_C-linearis_contig10.602.1 ID=mRNA_C-linearis_contig10.602.1|Name=mRNA_C-linearis_contig10.602.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at C-linearis_contig10:2818885..2822495- (Chordaria linearis ClinC8C monoicous)
ATGGCGAACAACTCTGGGGCTACAACTCTGGGGCAAATCCCTGACGATGA
AGCATGGCACAGAACGATTATTCTTCCTCGCGACATCTTGGATAACCCAC
CCTCGGGAGAGCACGAGCACGGCGAGGTGGCCTGGGAAATAGAGTCCTCT
CATCGCAGCTGGGGTTGCGGACTTCTCCAGGAGGCTGGAATCCTGCTGAG
ATGGCGAACAACTCTGGGGCTACAACTCTGGGGCAAATCCCTGACGATGA
AGCATGGCACAGAACGATTATTCTTCCTCGCGACATCTTGGATAACCCAC
CCTCGGGAGAGCACGAGCACGGCGAGGTGGCCTGGGAAATAGAGTCCTCT
CATCGCAGCTGGGGTTGCGGACTTCTCCAGGAGGCTGGAATCCTGCTGAG
GTTACCTCAGGTCGTGATGTGTACTGCACAGAACTTGCTTCAGCGATTCT
TCTATCGCAAACCGCTGACCGATTTTGATGCTTTCAGCGTAGCGATGGGC
TGCATGCTTCTTGCGATGAAAATCGAAGAAGACCCACGGCAGCCGCGCGC
GGTGGTGCTGGTTTTTCACCGCATGTTTGAACGGCGGGTAGGGATTGAAC
CCTCAAGCGTGATCCCACCCGAATCTCTGAGGGCTCTGCGTGACGAGATG
CTGCGTGTTGAGCTCCATGTTCTGAAGGAGCTTGGTTTCGGGTTCTACAA
CATTATGGATCATCCCCACAAGTTCATTCTCTACTACCTTAAAGTGCTGG
AGTTGGACATCGAAGGAGACGTGTCCCAGCGTGCTTGGAACTACGTGAAC
GACTCGCTTCGCACAGATCTGTCGCTGCGGTTCCGCTCGGAGGTAATAGC
GTGCGCGGCAATCTACATGGCTTCGCGCTCACTCGGCATCAAGCTTCCTG
ACCACCCACCATGGTGGGCCCTCTTCAACGCAGATATGCAAGAAATGGGA
GAGATCTGTAATACTATCTTGGCTCTTTATCACCGACCAAAAGTGGAGTT
CTTGGAACCCCTTTGTGAGAAGAGCATCTTCAGGAGAGGAGGTCCGTTGC
GAAAAGAGGCCGTCGTCGAAGCCGCTACTGAGGCCGCTCCGGAGGTCTAT
GCACCAGCAGAGGAGGAACCTGTCCCGTCCGCACCAGAACTAGCAGTTCC
CACCCCACAGGAGTCTGTCGGATCAGCGGCAGTTGCCACCGAAAGCAATG
CTGCTGCCACTGATGCCACTAGCCCTGAAGCACCGGTTTCATCTGCACCA
GCTACGAGTGTGCGAGTTCCTCAGAGCAATGGCACGAGTGAACCCTCAAC
CCACAAAGGCCCGGAGAGAGGAAGCGAGAGTAGAAGTCGGAGTCCTGGGA
GCAGATCTGCCCACAGCCATAGGAGTCACAGCACAAACCGCAGTGCACCG
GGATTAGAACGTGACGATGGGGGTGACGACCAAGGACGAAACGACCGTTC
ACCAGAAAGAACGCAGGATCGAGAGAGGGACCGAAAACGCCCGAGGGAAT
CCCGCCGTAACCGAGGCGATAGTAGAGAGAGGGCGAGAGAGAGTTACAGG
AGGTTACCTCAGGTCGTGATGTGTACTGCACAGAACTTGCTTCAGCGATT
CTTCTATCGCAAACCGCTGACCGATTTTGATGCTTTCAGCGTAGCGATGG
GCTGCATGCTTCTTGCGATGAAAATCGAAGAAGACCCACGGCAGCCGCGC
GCGGTGGTGCTGGTTTTTCACCGCATGTTTGAACGGCGGGTAGGGATTGA
ACCCTCAAGCGTGATCCCACCCGAATCTCTGAGGGCTCTGCGTGACGAGA
TGCTGCGTGTTGAGCTCCATGTTCTGAAGGAGCTTGGTTTCGGGTTCTAC
AACATTATGGATCATCCCCACAAGTTCATTCTCTACTACCTTAAAGTGCT
GGAGTTGGACATCGAAGGAGACGTGTCCCAGCGTGCTTGGAACTACGTGA
ACGACTCGCTTCGCACAGATCTGTCGCTGCGGTTCCGCTCGGAGGTAATA
GCGTGCGCGGCAATCTACATGGCTTCGCGCTCACTCGGCATCAAGCTTCC
TGACCACCCACCATGGTGGGCCCTCTTCAACGCAGATATGCAAGAAATGG
GAGAGATCTGTAATACTATCTTGGCTCTTTATCACCGACCAAAAGTGGAG
TTCTTGGAACCCCTTTGTGAGAAGAGCATCTTCAGGAGAGGAGGTCCGTT
GCGAAAAGAGGCCGTCGTCGAAGCCGCTACTGAGGCCGCTCCGGAGGTCT
ATGCACCAGCAGAGGAGGAACCTGTCCCGTCCGCACCAGAACTAGCAGTT
CCCACCCCACAGGAGTCTGTCGGATCAGCGGCAGTTGCCACCGAAAGCAA
TGCTGCTGCCACTGATGCCACTAGCCCTGAAGCACCGGTTTCATCTGCAC
CAGCTACGAGTGTGCGAGTTCCTCAGAGCAATGGCACGAGTGAACCCTCA
ACCCACAAAGGCCCGGAGAGAGGAAGCGAGAGTAGAAGTCGGAGTCCTGG
GAGCAGATCTGCCCACAGCCATAGGAGTCACAGCACAAACCGCAGTGCAC
CGGGATTAGAACGTGACGATGGGGGTGACGACCAAGGACGAAACGACCGT
TCACCAGAAAGAACGCAGGATCGAGAGAGGGACCGAAAACGCCCGAGGGA
ATCCCGCCGTAACCGAGGCGATAGTAGAGAGAGGGCGAGAGAGAGTTACA
GGAGGTCTGCCATAAGGGAATCAAGGCGCAGCCGGAGCCGAAGCCGTAGT
CGCAGTCGTAGAGATCGAAAGGGTGACAGCAGAGAGAGAGGACGTGGCCG
AGACAGAGATAAAGAACGCGGGGACAGGCGTCACGAATCGAGTAGGAGAA
TTCGAAGGTAGGTCTGCCATAAGGGAATCAAGGCGCAGCCGGAGCCGAAG
CCGTAGTCGCAGTCGTAGAGATCGAAAGGGTGACAGCAGAGAGAGAGGAC
GTGGCCGAGACAGAGATAAAGAACGCGGGGACAGGCGTCACGAATCGAGT
AGGAGAATTCGAAGGTAG
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