mRNA_C-linearis_contig10.602.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: D7G8Q2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q2_ECTSI) HSP 1 Score: 542 bits (1397), Expect = 2.340e-183 Identity = 267/304 (87.83%), Postives = 280/304 (92.11%), Query Frame = 1 Query: 76 MANNSGATTLGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFRRGGPLRKEAVVEAATEAAPEVYAPAE 987 MA+ S A TLGQIPDDEAWHRTIILPRDILDNPPSGEHE V WE ESSHR WGC LLQEAG+LLRLPQVVMCTAQNLLQRFFYRKPLT FDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERR+G++P+ VIPPESLR LRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYL+VLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPD+PPWW LFNADMQEMGEICNTILALYHRPKV FLEPLC+ S+FRRGGPLR +AVV+ EVYAPA+ Sbjct: 43 MADGSVARTLGQIPDDEAWHRTIILPRDILDNPPSGEHE---VDWETESSHRIWGCELLQEAGVLLRLPQVVMCTAQNLLQRFFYRKPLTKFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRIGVDPAIVIPPESLRVLRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLRVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDNPPWWVLFNADMQEMGEICNTILALYHRPKVAFLEPLCDNSVFRRGGPLRIDAVVQ----NIQEVYAPAD 339
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A835YUR3_9STRA (Cyclin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR3_9STRA) HSP 1 Score: 338 bits (868), Expect = 1.670e-106 Identity = 167/272 (61.40%), Postives = 211/272 (77.57%), Query Frame = 1 Query: 124 EAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEE--DPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRA-LRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFRRGGPLRK 930 E WH ++LP +IL NPPS +H V WE E+ HR+WGC L+QEAGILLRLPQVVMCT Q LLQRF+YRK LT FDAFSVAMGC+LLA K+EE + R VV+VFHRM+ RR G+ + ++ A L+ EM+RVE +VLK+LGFGFYNIMDHPHKFILYY++VL ++E +QR W+Y+ND+LRTDL LR+R+EVIACAAIYMA+R+L ++LP PPWW LFNA++ E+G+ICN ILALY +PKV +LEPL S+F GG +R+ Sbjct: 1 EPWHSVVLLPEEILANPPSKDHG---VDWETETQHRAWGCELIQEAGILLRLPQVVMCTGQTLLQRFYYRKSLTKFDAFSVAMGCVLLAAKLEEAIGHTRVRDVVMVFHRMYLRRRGLPLEFLELGGTVYAELKTEMIRVERYVLKDLGFGFYNIMDHPHKFILYYVRVLGWELEA--TQRVWSYLNDALRTDLCLRYRAEVIACAAIYMAARALRLRLPQSPPWWRLFNAELPEIGQICNAILALYKKPKVVWLEPLHSGSVFAPGGAVRR 267
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A7S4D4U7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4U7_HETAK) HSP 1 Score: 298 bits (762), Expect = 7.590e-91 Identity = 152/283 (53.71%), Postives = 195/283 (68.90%), Query Frame = 1 Query: 73 GMANNSGATTLGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIP--PESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFRRG 915 G AN T + E WH LP +ILDN PS + V WE E R WGC L+QEAG+LLRLPQVVM T QNLLQRFFYR+ L FDAF+VAMGC+ L+ K+EE P++ R ++ VFH + + R G EP + + ++ + E++++E HVLKELGF FYNIMDHPHKFILYY+KVL D ++QRAW+YVNDSLRTDL LR + VIACAAIYMA+R L + LP PPWW LF+A ++++ IC+ ILALY K ++EPL E ++F+RG Sbjct: 16 GAANGEVKGTPEEEKAPEPWHMVQTLPAEILDNSPS---KKDGVPWEQEYKFRVWGCELVQEAGVLLRLPQVVMATGQNLLQRFFYRRSLKRFDAFTVAMGCLFLSCKVEEKPKRLREILFVFHHISQVRRG-EPITPLELGAQTYMQWKSELIKMERHVLKELGFSFYNIMDHPHKFILYYIKVL--DGSSALAQRAWSYVNDSLRTDLCLRHGAAVIACAAIYMAARVLRVPLPRSPPWWELFSAQLRDVAAICDAILALYEMEKTPWMEPLSEANVFKRG 292
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: W7U1X8_9STRA (Ania-6a type cyclin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1X8_9STRA) HSP 1 Score: 275 bits (703), Expect = 1.650e-79 Identity = 150/290 (51.72%), Postives = 186/290 (64.14%), Query Frame = 1 Query: 103 LGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTD-------------------FDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLRA--LRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVE-------FLEPL 888 L + D WH ++LPR +L PS E +E HR +GC L+QEAGILLR PQVVM TAQ L RFFYR+ LT FDAF+VAMGC+ LA K+EE PR PR V+ VFH M RR G+ PS ++ S+R LR+ +L +E +VLKELGFGFY+IMDHPHKFILYY+K L D ++QRAWNY+NDSLR D +RFR+E+IAC A+YMASR LG+KLPD PPW+ALF A ++EM + N IL+LY E +LEPL Sbjct: 33 LEDVSVDGEWHEVVLLPRHVLRESPSRRLGVPEA---VERRHRIFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRRALTSERAQDVPEPGPGKSPRVFLFDAFTVAMGCVFLASKLEEKPRAPRDVLFVFHHMCRRRRGLGPS-LLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTL--DGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLGVKLPDDPPWFALFGASLEEMRHVGNVILSLYREKDEEGEEAPLRWLEPL 316
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: F0YGC1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGC1_AURAN) HSP 1 Score: 240 bits (613), Expect = 7.600e-71 Identity = 127/243 (52.26%), Postives = 168/243 (69.14%), Query Frame = 1 Query: 145 ILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSVIPPESLR--ALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHP--PWWALFNADMQEMGEICNTILALYHR 861 +LP D+L+N PS + V+ E + R WGC L+QEAGILLRLPQVVMCT QN+ QRF+YR L FDAF AMGC LA KIEE P++ R ++VFH F RV + S+ + +R + E+++VE H+LKELGF FY I+DH HKFIL+Y+K+L+ D G+++Q AW+Y+ND LRTD +LR+RSEV+ACAAIYMA+R L KLPD P PWW +F ++ + +LALY R Sbjct: 2 LLPADMLENSPS---KRDGVSAADEYAQRVWGCELIQEAGILLRLPQVVMCTGQNIFQRFYYRVSLKRFDAFLSAMGCFFLACKIEEKPKRLRECLMVFH--FVYRVRTKSSATLELGGVRYNGWKHELVKVERHILKELGFSFY-IIDHSHKFILFYVKLLDCD--GELAQEAWSYLNDCLRTDAALRYRSEVLACAAIYMAARRLQHKLPDDPAAPWWEVFRVGKADLDAVVAAVLALYVR 236
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: F0WDA4_9STRA (CyclinL1 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WDA4_9STRA) HSP 1 Score: 239 bits (611), Expect = 3.640e-69 Identity = 119/260 (45.77%), Postives = 170/260 (65.38%), Query Frame = 1 Query: 145 ILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERR----VGIEPSSV-IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIFR 909 +LP +IL NPPS + ++ ++E HR WGC L+QEAG LL+LPQVVM TAQ +L RF+YRK L DFDAF V+ C+ LA K+EE P + ++ VF+ +++RR IE + + ++ RD M+ +E +L +LGF YN+M+H HK++LYY+K+L D +++Q+AW Y NDSLR DL RF + I C ++++A R L IKLPD+PPWW LF +EM I IL LY R +E+L+PL E + F+ Sbjct: 13 LLPEEILRNPPS---QRDGISSQVERDHRFWGCELIQEAGTLLKLPQVVMVTAQTILHRFYYRKSLRDFDAFRVSFACLFLAAKVEEVPTRISEILTVFYAIYKRRRWKETNIENQLLDLDGDTYCQWRDWMILLERQLLIDLGFSIYNVMEHAHKYVLYYIKIL--DGTKELAQKAWGYANDSLRVDLMTRFSAAAIGCGSLFLAGRVLQIKLPDNPPWWLLFEVSQEEMVTIAREILQLYTRNAIEWLDPLTEINPFQ 267
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: W2R3U0_PHYPN (Uncharacterized protein (Fragment) n=11 Tax=Phytophthora TaxID=4783 RepID=W2R3U0_PHYPN) HSP 1 Score: 241 bits (614), Expect = 5.780e-69 Identity = 124/261 (47.51%), Postives = 178/261 (68.20%), Query Frame = 1 Query: 142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSV------IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906 ++LP L PS E + + +IE HRS+GC L+QEAG+LLRLPQVVM TAQ LLQRF+YRK L FDAF VA+ C+ LA K+EE P++ + VV VF+ MF RR + S+V + + R ++ VE VL +LGF Y++ +HPHK++LYY+KVL D ++Q+AW Y+NDSLRTDL +R++++VIACAAI++ASR G+ LP++PPW+ LF+ D ++ + I+ LY + K+++LEPL E + F Sbjct: 10 VVLPASSLARSPSLEDD---IKPDIERLHRSFGCELIQEAGVLLRLPQVVMATAQTLLQRFYYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIKDVVGVFYAMFRRRKW-QRSTVSQQLVDLDGATFSQWRMWLIMVERQVLIDLGFSIYSVTEHPHKYVLYYVKVL--DGSSALAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPENPPWYLLFDVDKTQLYAVSVVIMELYKQEKIQWLEPLTETNPF 264
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A6A3UY25_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UY25_9STRA) HSP 1 Score: 237 bits (605), Expect = 1.190e-68 Identity = 121/260 (46.54%), Postives = 169/260 (65.00%), Query Frame = 1 Query: 142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSV-----IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906 ++LP +L PS E E +E HR++GC L+QEAG+LLRLPQVV+ TAQ LLQRFFYRK L FDAF VA+ C+ LA K+EE P++ R V+ VF+ M RR S + + R ++ VE VL +LGF YN+ HPHKF+LYY+KVL D ++Q+AW Y+NDSLR DL +R+ ++VIACAAI++ASR + LP+ PPW+ALF+ D ++ + I+ LY + ++E+LEPL + + F Sbjct: 10 VVLPASVLARSPSREDGVSEA---VERLHRAFGCELIQEAGVLLRLPQVVLATAQTLLQRFFYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIRDVLAVFYAMLRRRKWKRSSVAQQLVDVDGATFAQWRMWLIMVERQVLIDLGFSVYNVAQHPHKFVLYYVKVL--DGSPQLAQQAWGYINDSLRADLCVRYSAQVIACAAIFLASRFQHVALPERPPWYALFDVDKTQLYAVSVAIMELYKQERIEWLEPLTDTNPF 264
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A8K1CU74_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU74_PYTOL) HSP 1 Score: 246 bits (627), Expect = 3.330e-68 Identity = 131/264 (49.62%), Postives = 175/264 (66.29%), Query Frame = 1 Query: 142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVG---------IEPSSVIPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906 ++LP IL PS + G A E E HR WGC L++EAGILLRLPQVVM TAQ +LQRF+YRK L DFDAF VA+GC+ LA K+EE P++ R VV VF+ ++ RR +EP S +S D ++ VE +L +LGF Y IM+HPHK+ILYY+K+L D ++Q+AW Y+NDSLR DL +R+R+EVIACAAI++ASR L +KLP PPW+ LF+ D + + I+ LY R K+ +L+PL E + F Sbjct: 9 VVLPEAILARSPS--QQDGVSAHE-ERDHRFWGCELIEEAGILLRLPQVVMVTAQTMLQRFYYRKSLRDFDAFRVAIGCLFLAAKVEEQPKRMREVVSVFYAIYRRRKWGKTRMTQQLLEPES----DSYYLWCDWLIMVERQILIDLGFSLYTIMEHPHKYILYYIKIL--DGSKALAQKAWGYLNDSLRVDLCVRYRAEVIACAAIFLASRMLQVKLPMSPPWFELFDVDETALLQASTVIMELYTRKKIVWLDPLTEVNPF 263
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Match: A0A225WJ87_9STRA (Cyclin-L1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WJ87_9STRA) HSP 1 Score: 235 bits (600), Expect = 6.130e-68 Identity = 119/260 (45.77%), Postives = 173/260 (66.54%), Query Frame = 1 Query: 142 IILPRDILDNPPSGEHEHGEVAWEIESSHRSWGCGLLQEAGILLRLPQVVMCTAQNLLQRFFYRKPLTDFDAFSVAMGCMLLAMKIEEDPRQPRAVVLVFHRMFERRVGIEPSSV-----IPPESLRALRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLKVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLGIKLPDHPPWWALFNADMQEMGEICNTILALYHRPKVEFLEPLCEKSIF 906 ++LP L PS E ++ + E HRS+GC L+QEAG+LLRLPQVV+ TAQ LL RF+YRK L FDAF VA+ C+ LA K+EE P++ + V+ VF+ M RR + + + R ++ VE VL +LGF YN+ +HPHK++LYY+KVL D ++Q+AW Y+NDSLRTDL +R++++VIACAAI++ASR G+ LP++PPW++LF+ + ++ + I+ LY + KVE+LEPL E + F Sbjct: 8 VVLPASSLQRSPSLEDG---ISSDTERLHRSFGCELIQEAGVLLRLPQVVLATAQTLLHRFYYRKSLRQFDAFRVAVSCLFLAAKVEEKPKRIKDVLGVFYAMLRRRKWRRTTVTQQLVDVDGATFSQWRMWLIMVERQVLIDLGFSVYNVTEHPHKYVLYYVKVL--DGSSTLAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPENPPWYSLFDVEKTQLYAVSVAIMQLYKQEKVEWLEPLTETNPF 262 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.602.1 >prot_C-linearis_contig10.602.1 ID=prot_C-linearis_contig10.602.1|Name=mRNA_C-linearis_contig10.602.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=503bp MANNSGATTLGQIPDDEAWHRTIILPRDILDNPPSGEHEHGEVAWEIESSback to top mRNA from alignment at C-linearis_contig10:2818885..2822495- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.602.1 ID=mRNA_C-linearis_contig10.602.1|Name=mRNA_C-linearis_contig10.602.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3611bp|location=Sequence derived from alignment at C-linearis_contig10:2818885..2822495- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2818885..2822495- >mRNA_C-linearis_contig10.602.1 ID=mRNA_C-linearis_contig10.602.1|Name=mRNA_C-linearis_contig10.602.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at C-linearis_contig10:2818885..2822495- (Chordaria linearis ClinC8C monoicous)back to top |