mRNA_C-linearis_contig10.600.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.600.1
Unique NamemRNA_C-linearis_contig10.600.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.600.1 vs. uniprot
Match: A0A6H5L1B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.180e-10
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:  499 MDGEPPGCQGLDARGGGICPPTWATKP*G 585
            MDGEPPGCQGLDARGGGICPPTWAT P G
Sbjct:    1 MDGEPPGCQGLDARGGGICPPTWATGPSG 29
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1B6_9PHAE2.180e-1093.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2790874..2791739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size587
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.600.1prot_C-linearis_contig10.600.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2791164..2791739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.2549467-UTR-C-linearis_contig10:2790873..27911631622927324.2549467-UTR-C-linearis_contig10:2790873..2791163Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2790874..2791163 +
1690879626.7028694-UTR-C-linearis_contig10:2790873..27911631690879626.7028694-UTR-C-linearis_contig10:2790873..2791163Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2790874..2791163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.2639813-CDS-C-linearis_contig10:2791163..27912821622927324.2639813-CDS-C-linearis_contig10:2791163..2791282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2791164..2791282 +
1690879626.7159863-CDS-C-linearis_contig10:2791163..27912821690879626.7159863-CDS-C-linearis_contig10:2791163..2791282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2791164..2791282 +
1622927324.276832-CDS-C-linearis_contig10:2791561..27917391622927324.276832-CDS-C-linearis_contig10:2791561..2791739Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2791562..2791739 +
1690879626.726828-CDS-C-linearis_contig10:2791561..27917391690879626.726828-CDS-C-linearis_contig10:2791561..2791739Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2791562..2791739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.600.1

>prot_C-linearis_contig10.600.1 ID=prot_C-linearis_contig10.600.1|Name=mRNA_C-linearis_contig10.600.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=99bp
MRHACSTLRVLTTSVPVWCGKLRLDARGCCTCVRASDQMRPVPFFGAALG
STWTRRRACEMRGPCRLGIYGRRATGMPRIGCERWRYLPAYVGHKTLR*
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mRNA from alignment at C-linearis_contig10:2790874..2791739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.600.1 ID=mRNA_C-linearis_contig10.600.1|Name=mRNA_C-linearis_contig10.600.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=866bp|location=Sequence derived from alignment at C-linearis_contig10:2790874..2791739+ (Chordaria linearis ClinC8C monoicous)
CTTCCTTTCGTCCCACAAACGCCCGTCAAGTTTTGCACAAGATTCAATCA
TGTGGCCAGCTGTAGCGTTTCCGCGCCCCTTTCCATGTTTATCCAGTGCT
TGCGCCCTTTCGCCCCGTAATCTCCCCACGCCCGTTCACTTGTGCTCTCC
CATTACAGGCCAGTGATATTATGCACCCTACGCGCTCTTCACCCGTGCCC
TTTGTCGGCACTGCTGTGTAGCGCGCTTGGATTTTGCTGGACCCATCTGT
TGATCAGCACATAAGCTTTTCTTCACGGGGGATTCCAGTCATGCGCCACG
CATGTAGCACTTTACGCGTCCTCACTACTTCAGTACCCGTATGGTGCGGA
AAGCTTCGGCTTGATGCACGTGGGTGTTGCACGTGTGTGCGTGCATCAGA
TCAAATGAGGTGTGTGTCTTGCATTGCTCCATACAGAACAAATTCCGCCG
GCACTTTTCCACCTCGAGACAATGCCCAGAAACCATGCGAACACTGGTGT
CGATAGTGTCGTTTTTCCTCGGTATTCTCAAGTGATGCGAACGCCCCGCC
CCCCCCCCCGGTATCTCATCGCGTCCCATACGCACCCCCTCACGTAGCCT
CACCGCGCACATCGTCCTATTTTGTGCGCCTCGCAATTTTCACGCTCTCT
CTCGTACACACACCCTCCCTCCTCTACCCGCACTGCAGACCCGTGCCTTT
CTTCGGCGCGGCTCTTGGATCTACGTGGACGCGAAGGCGTGCGTGTGAGA
TGCGCGGGCCTTGCAGGTTGGGAATATATGGACGGAGAGCCACCGGGATG
CCAAGGATTGGATGCGAGAGGTGGCGGTATTTGCCCGCCTACGTGGGCCA
CAAAACCTTAAGGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2790874..2791739+

>mRNA_C-linearis_contig10.600.1 ID=mRNA_C-linearis_contig10.600.1|Name=mRNA_C-linearis_contig10.600.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at C-linearis_contig10:2790874..2791739+ (Chordaria linearis ClinC8C monoicous)
ATGCGCCACGCATGTAGCACTTTACGCGTCCTCACTACTTCAGTACCCGT
ATGGTGCGGAAAGCTTCGGCTTGATGCACGTGGGTGTTGCACGTGTGTGC
GTGCATCAGATCAAATGAGATGCGCCACGCATGTAGCACTTTACGCGTCC
TCACTACTTCAGTACCCGTATGGTGCGGAAAGCTTCGGCTTGATGCACGT
GGGTGTTGCACGTGTGTGCGTGCATCAGATCAAATGAGACCCGTGCCTTT
CTTCGGCGCGGCTCTTGGATCTACGTGGACGCGAAGGCGTGCGTGTGAGA
TGCGCGGGCCTTGCAGGTTGGGAATATATGGACGGAGAGCCACCGGGATG
CCAAGGATTGGATGCGAGAGGTGGCGGTATTTGCCCGCCTACGTGGGCCA
CAAAACCTTAAGGTGAACCCGTGCCTTTCTTCGGCGCGGCTCTTGGATCT
ACGTGGACGCGAAGGCGTGCGTGTGAGATGCGCGGGCCTTGCAGGTTGGG
AATATATGGACGGAGAGCCACCGGGATGCCAAGGATTGGATGCGAGAGGT
GGCGGTATTTGCCCGCCTACGTGGGCCACAAAACCTTAAGGTGA
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