mRNA_C-linearis_contig10.599.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.599.1
Unique NamemRNA_C-linearis_contig10.599.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.910e-43
Identity = 88/133 (66.17%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSELDDGATPXXXXXXXXXXXXXXXXLRANANPLLSADG 399
            MVASVIGSSRVVRDLLRQGAS+ +ADSDG TALHHSVYH HLAVSK+LIEAGADLEAR GG        TPLHVAATKGF  G+ +L+D      S LDDGATP                LRANANPLLSA G
Sbjct:   34 MVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG------KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRANANPLLSACG 154          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.610e-30
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGF 240
            MVASVIGSSRVVRDLLRQGAS+ +ADSDGY ALHH+VYHKHLAVSK+LIEAGADL+ARPGG     +D TPLHVAATKGF
Sbjct:  424 MVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGG-----ID-TPLHVAATKGF 497          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.180e-28
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSELDDGATPXXXXXXXXXXXXXXXXLRANANPLLSA 393
            M A  +G  RVVR LLR GA + +AD+DG TALH S+ +KHLAVSK L++AGA +EAR       GVDGTPLHVAA KGF+ G+V+LI AGA+VDSE +  ATP                + A  NPLL A
Sbjct:   44 MAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGAKVNPLLPA 167          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 6.280e-25
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSEL 294
            M AS +G  RVVR LLR GA + +AD+DG TALH S+ +KHLAVSK L++AGA +EAR       GVDGTPLHVAA KGF+ G+V+LI AG     +L
Sbjct:   44 MAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGGCSSRDL 134          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.410e-24
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPG 180
            MVASVIGSSRVV+DLLRQGAS+ +ADSDGYTALHHSVYH+HLAVS  LIEAGADLEARPG
Sbjct:   34 MVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.140e-22
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGA 276
            M AS +G  RVVR LLR GA + +AD+DG TALH S+  KHLAVS+ L++AGA +EAR       GVDGTPLHVAA KGF+ G+V+LI   A
Sbjct:   44 MAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHVDA 128          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.720e-22
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    4 VASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAG 273
            VAS +G  RVVR LLR GA +  AD+DG TALH S+ +KHLAVSK L++AGADLEAR       GV  TPLHVAA KGF+ G+V+LI AG
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.920e-19
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDG--VDG-TPLHVAATKGFYPGIVVLIDAGASVDSELDDGATPXXXXXXXXXXXXXXXXLRANANPLL 387
            M A+  G  R+VR LLR GA + ++  DG+TALH ++  ++LAV+K LI+AGA++EA+     ++   V G TPLH+AA +GF  G+V LI+AGA+VDS + DG+T                  +  ANPLL
Sbjct:   57 MCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLL 188          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.000e-16
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSK 138
            MVASVIG SRVVRDLLRQGAS+ +ADSDGYTALHH+VYHKHLAVSK
Sbjct:   40 MVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A7N5ZSZ1_ANATE (Palmitoyltransferase n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N5ZSZ1_ANATE)

HSP 1 Score: 57.8 bits (138), Expect = 4.090e-7
Identity = 42/127 (33.07%), Postives = 59/127 (46.46%), Query Frame = 1
Query:   19 GSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEA-------------------RPGGFM------VDGVD----GTPLHVAATKGFYPGIVVLIDAGASVDSELDDGATP 312
            G   +V  LLR GA   IAD +GY ALH ++  +H+A++  L+  G +++                     P  F+      V  VD     TPLH A   G      +L++AGASVDSE  +G TP
Sbjct:   88 GHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQEVDGPDCNGQTPLMLAAQKIIGPEPTNFLIKNNASVSAVDKVNRNTPLHCAVLAGNVDAAHILLEAGASVDSENINGHTP 214          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH66_ECTSI1.910e-4366.17EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1W5_9PHAE1.610e-3082.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE3.180e-2852.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G449_ECTSI6.280e-2558.16EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JHQ8_9PHAE2.410e-2488.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI1.140e-2258.70EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JNS0_9PHAE2.720e-2262.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE3.920e-1942.42Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5L5L0_9PHAE2.000e-1689.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7N5ZSZ1_ANATE4.090e-733.07Palmitoyltransferase n=2 Tax=Anabas testudineus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2784746..2785144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue3e-34
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size401
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.6049232-CDS-C-linearis_contig10:2784745..27851441622927344.6049232-CDS-C-linearis_contig10:2784745..2785144Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2784746..2785144 +
1690879640.7381527-CDS-C-linearis_contig10:2784745..27851441690879640.7381527-CDS-C-linearis_contig10:2784745..2785144Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2784746..2785144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.599.1prot_C-linearis_contig10.599.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2784746..2785144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.599.1

>prot_C-linearis_contig10.599.1 ID=prot_C-linearis_contig10.599.1|Name=mRNA_C-linearis_contig10.599.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=133bp
MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIE
AGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSELDD
GATPLSFAARNGWLEAVTVLLRANANPLLSADG
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mRNA from alignment at C-linearis_contig10:2784746..2785144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.599.1 ID=mRNA_C-linearis_contig10.599.1|Name=mRNA_C-linearis_contig10.599.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at C-linearis_contig10:2784746..2785144+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGAG GCAGGGTGCCAGCATGTTGATAGCGGACAGCGACGGTTATACTGCTCTGC ACCACTCGGTTTATCACAAGCATCTGGCCGTCAGCAAAGAGCTGATCGAG GCGGGAGCGGACCTTGAAGCGAGGCCCGGTGGCTTCATGGTGGATGGTGT TGATGGTACACCACTTCACGTGGCCGCGACGAAAGGGTTTTACCCAGGAA TAGTGGTGCTGATCGACGCTGGCGCGAGTGTGGACAGCGAGCTAGACGAC GGGGCGACACCTCTGTCCTTCGCGGCAAGGAATGGGTGGCTGGAAGCGGT CACGGTTCTCCTTCGGGCGAACGCGAATCCGCTCTTGTCTGCGGACGGC
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Coding sequence (CDS) from alignment at C-linearis_contig10:2784746..2785144+

>mRNA_C-linearis_contig10.599.1 ID=mRNA_C-linearis_contig10.599.1|Name=mRNA_C-linearis_contig10.599.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at C-linearis_contig10:2784746..2785144+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGAG
GCAGGGTGCCAGCATGTTGATAGCGGACAGCGACGGTTATACTGCTCTGC
ACCACTCGGTTTATCACAAGCATCTGGCCGTCAGCAAAGAGCTGATCGAG
GCGGGAGCGGACCTTGAAGCGAGGCCCGGTGGCTTCATGGTGGATGGTGT
TGATGGTACACCACTTCACGTGGCCGCGACGAAAGGGTTTTACCCAGGAA
TAGTGGTGCTGATCGACGCTGGCGCGAGTGTGGACAGCGAGCTAGACGAC
GGGGCGACACCTCTGTCCTTCGCGGCAAGGAATGGGTGGCTGGAAGCGGT
CACGGTTCTCCTTCGGGCGAACGCGAATCCGCTCTTGTCTGCGGACGGCA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGAGG
CAGGGTGCCAGCATGTTGATAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACTCGGTTTATCACAAGCATCTGGCCGTCAGCAAAGAGCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCCCGGTGGCTTCATGGTGGATGGTGTT
GATGGTACACCACTTCACGTGGCCGCGACGAAAGGGTTTTACCCAGGAAT
AGTGGTGCTGATCGACGCTGGCGCGAGTGTGGACAGCGAGCTAGACGACG
GGGCGACACCTCTGTCCTTCGCGGCAAGGAATGGGTGGCTGGAAGCGGTC
ACGGTTCTCCTTCGGGCGAACGCGAATCCGCTCTTGTCTGCGGACGGC
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