mRNA_C-linearis_contig10.599.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 150 bits (379), Expect = 1.910e-43 Identity = 88/133 (66.17%), Postives = 94/133 (70.68%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSELDDGATPXXXXXXXXXXXXXXXXLRANANPLLSADG 399
MVASVIGSSRVVRDLLRQGAS+ +ADSDG TALHHSVYH HLAVSK+LIEAGADLEAR GG TPLHVAATKGF G+ +L+D S LDDGATP LRANANPLLSA G
Sbjct: 34 MVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG------KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRANANPLLSACG 154
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.610e-30 Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGF 240
MVASVIGSSRVVRDLLRQGAS+ +ADSDGY ALHH+VYHKHLAVSK+LIEAGADL+ARPGG +D TPLHVAATKGF
Sbjct: 424 MVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGG-----ID-TPLHVAATKGF 497
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 118 bits (295), Expect = 3.180e-28 Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSELDDGATPXXXXXXXXXXXXXXXXLRANANPLLSA 393
M A +G RVVR LLR GA + +AD+DG TALH S+ +KHLAVSK L++AGA +EAR GVDGTPLHVAA KGF+ G+V+LI AGA+VDSE + ATP + A NPLL A
Sbjct: 44 MAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGAKVNPLLPA 167
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 102 bits (255), Expect = 6.280e-25 Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGASVDSEL 294
M AS +G RVVR LLR GA + +AD+DG TALH S+ +KHLAVSK L++AGA +EAR GVDGTPLHVAA KGF+ G+V+LI AG +L
Sbjct: 44 MAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGGCSSRDL 134
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.410e-24 Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPG 180
MVASVIGSSRVV+DLLRQGAS+ +ADSDGYTALHHSVYH+HLAVS LIEAGADLEARPG
Sbjct: 34 MVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 1.140e-22 Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAGA 276
M AS +G RVVR LLR GA + +AD+DG TALH S+ KHLAVS+ L++AGA +EAR GVDGTPLHVAA KGF+ G+V+LI A
Sbjct: 44 MAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHVDA 128
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.720e-22 Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1 Query: 4 VASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDGVDGTPLHVAATKGFYPGIVVLIDAG 273
VAS +G RVVR LLR GA + AD+DG TALH S+ +KHLAVSK L++AGADLEAR GV TPLHVAA KGF+ G+V+LI AG
Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 3.920e-19 Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEARPGGFMVDG--VDG-TPLHVAATKGFYPGIVVLIDAGASVDSELDDGATPXXXXXXXXXXXXXXXXLRANANPLL 387
M A+ G R+VR LLR GA + ++ DG+TALH ++ ++LAV+K LI+AGA++EA+ ++ V G TPLH+AA +GF G+V LI+AGA+VDS + DG+T + ANPLL
Sbjct: 57 MCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLL 188
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.000e-16 Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 1 MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSK 138
MVASVIG SRVVRDLLRQGAS+ +ADSDGYTALHH+VYHKHLAVSK
Sbjct: 40 MVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Match: A0A7N5ZSZ1_ANATE (Palmitoyltransferase n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N5ZSZ1_ANATE) HSP 1 Score: 57.8 bits (138), Expect = 4.090e-7 Identity = 42/127 (33.07%), Postives = 59/127 (46.46%), Query Frame = 1 Query: 19 GSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEAGADLEA-------------------RPGGFM------VDGVD----GTPLHVAATKGFYPGIVVLIDAGASVDSELDDGATP 312
G +V LLR GA IAD +GY ALH ++ +H+A++ L+ G +++ P F+ V VD TPLH A G +L++AGASVDSE +G TP
Sbjct: 88 GHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQEVDGPDCNGQTPLMLAAQKIIGPEPTNFLIKNNASVSAVDKVNRNTPLHCAVLAGNVDAAHILLEAGASVDSENINGHTP 214 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.599.1 >prot_C-linearis_contig10.599.1 ID=prot_C-linearis_contig10.599.1|Name=mRNA_C-linearis_contig10.599.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=133bp MVASVIGSSRVVRDLLRQGASMLIADSDGYTALHHSVYHKHLAVSKELIEback to top mRNA from alignment at C-linearis_contig10:2784746..2785144+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.599.1 ID=mRNA_C-linearis_contig10.599.1|Name=mRNA_C-linearis_contig10.599.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at C-linearis_contig10:2784746..2785144+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2784746..2785144+ >mRNA_C-linearis_contig10.599.1 ID=mRNA_C-linearis_contig10.599.1|Name=mRNA_C-linearis_contig10.599.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at C-linearis_contig10:2784746..2785144+ (Chordaria linearis ClinC8C monoicous)back to top |