mRNA_C-linearis_contig10.595.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE) HSP 1 Score: 468 bits (1205), Expect = 6.320e-159 Identity = 236/335 (70.45%), Postives = 270/335 (80.60%), Query Frame = 1 Query: 313 AVNAKLADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLLYLLRCEGKNVVFERKGKWYRLSHAGVVQASLEAFNQHGYMDDPNSWYLSDPKDRPEEYFQGTTVVLVSPRTSRVNEFMKQADSCMFFMPVWSLDELFKCQRAVFPHVLETDVRERFGKVGGVARAVFDVEKLERVCRKMQTAASNMDLSLLQQILSRRRGDADQISTDRSGDALVHLLPIPETGFKDFSVDFASEYAHNLTVGELPKKEFVPLASFVRAAFANDELGTKVVAERAAGFETIAHKTIGGAGE 1317 AV LADFGA LT A++ +NTLELA+GTFFLG+P L S LF+RPCYK+LS LIL G + T VVTGTPGIGKS FGFYL+YLLR +G VV ERK W+R S GV +F + GY+ ++WYLSDP+DRP+E TVVL+SPR SRVNEFMKQ S F+MP W LDELF+C++AVFPHV ETDVRERF KVGGVARAVFD EKL++VC KMQ AASNMDL+LLQQILSR R D DQ+STDRSGDAL+HLLPIPETGF++FSVDFASE+AH +T+GELPKKEF PLASFV AAFA+DELG KV AERAAGFETIAHKTIGGA E Sbjct: 35 AVPKALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTVVLERKDSWFRFSDEGVTVGYFYSFRRAGYLYGNSTWYLSDPEDRPKELLGLPTVVLLSPRKSRVNEFMKQPGSRRFYMPPWCLDELFRCRQAVFPHVPETDVRERFSKVGGVARAVFDAEKLKQVCLKMQAAASNMDLNLLQQILSRSRDDVDQVSTDRSGDALLHLLPIPETGFEEFSVDFASEFAHIVTLGELPKKEFAPLASFVGAAFAHDELGDKVTAERAAGFETIAHKTIGGASE 369
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI) HSP 1 Score: 244 bits (623), Expect = 1.270e-75 Identity = 146/202 (72.28%), Postives = 160/202 (79.21%), Query Frame = 1 Query: 1 REAADGSPAADEIRAVQDEXXXXERKIEDAEEETAQVVKKIDGIEAAIAGGSRYLGMNDPEALLKQLGRKEEQXXXXXXXXX------------ELLLKKEDRLSRIEQLRANDAPAVNAKLADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLLYL 570 REAAD PAADEIRAVQD+ ERK EDAE+ETA+VVKKID IEAAIAGGSRYLGM DPEALLKQLGRKEEQXXXXXXXXX ELLLKKEDR SRIEQLRAN+APA N ++DF AALTGA++T +TLELANGTFFLG+ LGS LF+R CYKE++ LIL G D VVTGTPGIGKS FG+YLLYL Sbjct: 22 REAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAANKNVSDFAAALTGAVVTEDTLELANGTFFLGNSDLGSKLFIRHCYKEMADLILSGKVQDV----VVTGTPGIGKSTFGYYLLYL 219
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: A0A6H5KCR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR9_9PHAE) HSP 1 Score: 148 bits (374), Expect = 8.940e-40 Identity = 72/111 (64.86%), Postives = 83/111 (74.77%), Query Frame = 1 Query: 313 AVNAKLADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLLYLLRCEGKNVVFERKGKWYRLSHAGVV 645 AV LADFGA LT A++ +NTLELA+GTFFLG+P L S LF+RPCYK+LS LIL G + T VVTGTPGIGKS FGFYL+YLLR +G VV ERKG W+R S GV Sbjct: 16 AVPKALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTVVLERKGCWFRFSDGGVT 126
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: A0A397UD55_9GLOM (Uncharacterized protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UD55_9GLOM) HSP 1 Score: 143 bits (361), Expect = 3.030e-34 Identity = 98/335 (29.25%), Postives = 163/335 (48.66%), Query Frame = 1 Query: 328 LADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLLYLLRCEGKNVVFERKGKWYRLSHAGVVQASLEAFNQHGYMDDPNSWYLSDPKDRPEEYFQGTTVVLVSPRTSRVNEFMKQADSCMFFMPVWSLDELFKCQRAVFPHVLETDVRERFGKVGGVARAVFDVEKLERVCRKMQTAASNMDLSLLQQILSRRRGDADQISTDRSGDALVHL---LP-------IPETGFKDFSVDFASEYAHNLTVGELPKKEFVPLASFVRAAFANDELGTKVVAERAAGFETIAHKTI 1302 L F L A I NN L+L +GT+FLGD G+ L++R CY L+ +I ++ +TG PGIGK+ FG+YLLYLL+ + K +V+ + ++ L + S F+ + Y+D+ + WY+ D +P T++ SP+ EF K + + FMP WS +E+ +C+ +F H+ V + + + GG+ R VF+ ++ A + + LL + G+ D D +VH+ LP ET + + + FASE+ + + K L +FV A+ +++E T R FE IAH+ + Sbjct: 36 LGKFWCFLENAKIDNNFLQLPDGTYFLGDKKQGTILYIRKCYLHLADIIF----NEKINRCRITGNPGIGKTFFGYYLLYLLQKQNKTIVYHKARQYPILFNKQYTFRSDNIFDFNEYLDNTDVWYIVD--GQPPLEVHAKTILFCSPQKQHYKEFDKMIGTSIRFMPAWSWNEINECRIGIFNHLEIAKVEDLYSRWGGIPRFVFEKALDSSQQNHLEEAINKCNTRLLDFV-----GEIDH--ADDISHRIVHIHTNLPGEEEEKEDEETHYVNKFILFASEWVAEKVIDKFEKSYNQQLKNFVTASSSDNEYSTL----RGVIFEQIAHRIL 353
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: A0A397UC44_9GLOM (Uncharacterized protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UC44_9GLOM) HSP 1 Score: 132 bits (331), Expect = 5.630e-30 Identity = 97/335 (28.96%), Postives = 161/335 (48.06%), Query Frame = 1 Query: 328 LADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLLYLLRCEGKNVVFERKGKWYRLSHAGVVQASLEAFNQHGYMDDPNSWYLSDPKDRPEEYFQGTTVVLVSPRTSRVNEFMKQADSCMFFMPVWSLDELFKCQRAVFPHVLETDVRERFGKVGGVARAVFDVEKLERVCRKMQTAASNMDLSLLQQILSRRRGDADQISTDRSGDALVHL---LPIPETGFKDFSVD-------FASEYAHNLTVGELPKKEFVPLASFVRAAFANDELGTKVVAERAAGFETIAHKTI 1302 L F + L A I NN L+L +GT+FLGD GS L++R CY L+ +I + R +TG PGIGK+ FG+YLLY L + K +V+ + ++ L + +S + F+ + Y+++ + WY+ D +P + T++ SP+ EF K + + FMP+WS +E+ +C+ +F H+ V + + GG+ R V + +++ A S + LL + AD IS +VH+ LP E +D FASE+ + + + L +FV A+ +E T + FE IAH+ + Sbjct: 78 LGKFWSFLKNAKIDNNFLQLPDGTYFLGDKKQGSILYIRKCYLHLADIIF----KEKMRRCRITGNPGIGKTFFGYYLLYFLSKQNKTIVYHKACQFPILFNKQNTFSSDKIFDFYEYLNNRDVWYIVD--GQPPLEVRAKTILFCSPQKQHYKEFDKMVGTEIRFMPIWSWNEINECRIGMFNHLEIAKVEDLYSCWGGIPRFVLENALYSSQQNQLEEAISKCNNRLLDFV--GEINHADDISH-----RIVHIHTNLPGEEEENEDEETHYIKKFLLFASEWVAEKVMDKFERNYNQLLRNFVTASLFENEYNTL----QGVIFERIAHRIL 395
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI) HSP 1 Score: 120 bits (301), Expect = 8.260e-29 Identity = 86/125 (68.80%), Postives = 90/125 (72.00%), Query Frame = 1 Query: 1 REAADGSPAADEIRAVQDEXXXXERKIEDAEEETAQVVKKIDGIEAAIAGGSRYLGMNDPEALLKQLGRKEEQXXXXXXXXX-----------------ELLLKKEDRLSRIEQLRANDAPAVNA 324 REAAD PAADEIRAVQDE ERKIEDAEEETA+VVKKID IEAAIAGG+RYLGM DPEALLKQL + XXXXXXXXX ELLLK EDRLSR EQ RAN+APA A Sbjct: 29 REAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPADQA 153
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: A0A8H3WYS8_GIGMA (Putative crinkler family protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3WYS8_GIGMA) HSP 1 Score: 128 bits (321), Expect = 1.840e-28 Identity = 94/345 (27.25%), Postives = 166/345 (48.12%), Query Frame = 1 Query: 325 KLADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLLYLLRCEGKNVVFERKGKWYRL--SHAGVVQASLEAFNQHGYMDDPNSWYLSD---PKDRPEEYFQGTTVVLVSPRTSRVNEFMKQADSCMFFMPVWSLDELFKCQRAVFPHVLETDVRERFGKVGGVARAVFDVEKLERVCRKMQTAASNMDLSLLQQILSRRRGDADQISTDRSGDALVHL---LPIPETG-------FKDFSVDFASEYAHNLTVGELPKKEFVPLASFVRAAFANDELGTKVVAERAAGFETIAHKTIGGAG 1314 KL+ F L I+ L L++ F G S S +F+R CY +L ++ R +TG PGIGK+ FG+Y+LY L + K V++ + + + + + +L +FNQ Y+++P +WY+ D PK+ + T+++ SP+ EF K S + +MPVW+ +E+ +C+ +F H+ ++ + + GG+ R V + + +Q A +D ++L + G+ + D LVH+ LP+ E + + + FASEY N V +L L +F+ A+ + +E G+ R FE +AH+ + G G Sbjct: 118 KLSKFWKVLKNVKISGKFLRLSDNNHFFGKQSQPSVVFIRDCYIDLEGIVF----DKKIRRLRITGNPGIGKTFFGYYILYKLASKCKTVIYHKVNNDPIIFSNEGSISKENLFSFNQ--YLNEPETWYIVDGHVPKE-----CEAKTILVCSPKKGNYREFDKYIGSTIRYMPVWTFNEIEECRSNIFNHLGIDKIKNLYMRWGGIPRFVLENAHDKAQQNLLQHAIDTVDETILNYV-----GETN--CPDDVSHKLVHIRTNLPVDEETDVEKVLPYTETYIYFASEYVANEVVVKLKINYKEKLKNFIMASSSINEYGSL----RGNIFERVAHQILQGGG 440
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI) HSP 1 Score: 118 bits (295), Expect = 4.620e-28 Identity = 82/122 (67.21%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 1 REAADGSPAADEIRAVQDEXXXXERKIED-------AEEETAQVVKKIDGIEAAIAGGSRYLGMNDPEALLKQLGRKEEQXXXXXXXXXE----------LLLKKEDRLSRIEQLRANDAPA 315 REAADGSPAADEIRAVQ XXXX AEEETA+VVKKID IEAAIAGGS+YLGM DPEALLKQLGRKEEQ X +LLKKEDRLSRIEQLRAN+APA Sbjct: 22 REAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPA 143
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: A0A7S0WLH6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WLH6_9CHLO) HSP 1 Score: 125 bits (314), Expect = 1.260e-27 Identity = 99/332 (29.82%), Postives = 159/332 (47.89%), Query Frame = 1 Query: 313 AVNAKLADFGAALTGALITNNTLELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFRNFVVTGTPGIGKSVFGFYLL-YLLRCEGKNVVFERKGKWYRLSHAGVVQASLEAFNQHGYMDDPNSWYLSDPKDRPEEYFQGTTVVLVSPRTSRVNEFMKQADSCMFFMPVWSLDELFKCQRAVFPHVLETDVRERFGKVGGVARAVFD-VEKLERVCRKMQTAASNMDLSLLQQILSRRRGDADQISTDRSGDALVHLLPIPETGFKDFSVDFASEYAHNLTVGELPKKEFVPLASFVRAAFANDELGTKVVAERAAGFETIAHKTI 1302 A N +A F A L A + ++ LEL FFLGD +G++L +R YK+L ++L + +TG+PGIGKS F F+L+ +L + VV +G L G ++ H Y+ DPN+WYL D + E+ Q TV++ SP S + F+KQ + FMPVW+ DE+ C+ + + + V F K GG R V + E M A+ DL++L + L ++ ++ ++DR VH + S+ FAS+Y ++ +L + + ++RA LG R FE +AH+ + Sbjct: 51 AANNPMAQFWAGLAEAEVKDSFLELPKDCFFLGDKMMGNTLLIRDAYKDLLQIVLDRIKQGITK-VAITGSPGIGKSYFLFFLMRHLALTKQPVVVVHIRGMQKVLCFTGCNVLRSTLYDFHHYLQDPNTWYLVDGIE--PEFCQAKTVLVSSPNRSIYHTFLKQRGATQRFMPVWTKDEIDVCRARMHDGLTQELVDGLFMKWGGRPRYVLEKAEDPSAQALLMDAIATCPDLTMLMKSLGQQ--GREEKASDRLLTIDVH------EDYATTSMAFASDYIAHVVSAKLLEHTEHEVRIWLRATEGESILGPL----RGVLFERLAHRVL 367
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Match: D0NWG9_PHYIT (Crinkler (CRN) family protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NWG9_PHYIT) HSP 1 Score: 124 bits (310), Expect = 2.420e-27 Identity = 97/309 (31.39%), Postives = 150/309 (48.54%), Query Frame = 1 Query: 379 LELANGTFFLGDPSLGSSLFMRPCYKELSALILGGASSDTFR--NFVVTGTPGIGKSVFGFYLLYLLRCEGKNVVFERKG--KWYRLSHAGVVQASLEAFNQHGYMDDPNSWYLSDPKDRPEEYFQGTTVVLVSPRTSRVNEFMK-QADSCMFFMPVWSLDELFKCQRAVFPHVLETDVRERFGKVGGVARAVFDVEKLERVCRKMQTAASNMDLSLLQQILSRRRGDADQISTDRSGDALVHLLPIPETGFKDFSVDFASEYAHNLTVGELPKKEFVPLASFVRAAFANDELGTKVVAERAAGFETIA 1290 +EL T+ LGD +LGS +++R CY L L L + + V+ GTPGIGK+ FGF ++ +L G VV+E G K + +H V Q S E F + +D P ++Y+ D +P Y+ T++L SPR S EF K SC +MPVWSL E+ +C++ ++ V++ F + GG+AR V ++ ++ A +DL L + S+ + Q+S L+H + F+ FAS+Y L KK+ L F+ A+ L +V RA F A Sbjct: 168 VELPRDTYLLGDSTLGSRIYIRHCYPALWELCLERIRDEKTNTPHLVILGTPGIGKTFFGFVIVLILARAGATVVYESGGLKKRFLFAHNVVAQGSQEDFVR--ILDQPTTYYIVDAV-KPA-YYPAKTILLTSPRRSIWYEFNKTNCQSC--YMPVWSLKEILQCRKLMYSDTPMAVVQDCFRRWGGIARYVLRFSQVGDQQVLLEKATDTVDLDWLVKACSQLDANDAQVSH-----RLLHYRVSKAFDSEYFA--FASQYVQQAVYNRLYKKDKRKLLEFIAASDGVGALSWPLV-RRACAFSAAA 462 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.595.1 >prot_C-linearis_contig10.595.1 ID=prot_C-linearis_contig10.595.1|Name=mRNA_C-linearis_contig10.595.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=439bp REAADGSPAADEIRAVQDEIRGVERKIEDAEEETAQVVKKIDGIEAAIAGback to top mRNA from alignment at C-linearis_contig10:2753550..2757648+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.595.1 ID=mRNA_C-linearis_contig10.595.1|Name=mRNA_C-linearis_contig10.595.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4099bp|location=Sequence derived from alignment at C-linearis_contig10:2753550..2757648+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2753550..2757648+ >mRNA_C-linearis_contig10.595.1 ID=mRNA_C-linearis_contig10.595.1|Name=mRNA_C-linearis_contig10.595.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2634bp|location=Sequence derived from alignment at C-linearis_contig10:2753550..2757648+ (Chordaria linearis ClinC8C monoicous)back to top |