Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 620 |
| Cds size | 417 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927326.4071255-UTR-C-linearis_contig10:2739882..2740083 | 1622927326.4071255-UTR-C-linearis_contig10:2739882..2740083 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2739883..2740083 + |
| 1690879627.8444588-UTR-C-linearis_contig10:2739882..2740083 | 1690879627.8444588-UTR-C-linearis_contig10:2739882..2740083 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2739883..2740083 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927326.418435-CDS-C-linearis_contig10:2740083..2740500 | 1622927326.418435-CDS-C-linearis_contig10:2740083..2740500 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2740084..2740500 + |
| 1690879627.855488-CDS-C-linearis_contig10:2740083..2740500 | 1690879627.855488-CDS-C-linearis_contig10:2740083..2740500 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2740084..2740500 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.593.1 >prot_C-linearis_contig10.593.1 ID=prot_C-linearis_contig10.593.1|Name=mRNA_C-linearis_contig10.593.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=139bp
MVYDSDSEDESVDAKNKDKQTGDGRGGGRGESRCGRQGDPGKGYDSWNVY
FPLYWLMLLTRPRGQLATTTESSGKVAKMRKFPKFYEESFNLGKNTVATR
LDKDLVVIVHKRAAKKLRRRRSGLATEKKTRRGATGGVA back to topmRNA from alignment at C-linearis_contig10:2739883..2740500+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.593.1 ID=mRNA_C-linearis_contig10.593.1|Name=mRNA_C-linearis_contig10.593.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at C-linearis_contig10:2739883..2740500+ (Chordaria linearis ClinC8C monoicous)
GCGGGGAGCGATTCCGGGAGCGATGACGATACCAGCGCATCCGAAGCCGA
CGATGACGTCAATGACGACGATAGCGACTACGAGCACGTCGGTGAGAGGT
CCGGTGGGGGCGTCAAGCGTGGTGGCAGTGGTGTTCGTGCTGGTTAAATG
AAAAAGACAGAGACGGGTCTCATCGGTGGAAACGACTACGATGGAATATA
AATGGTATACGATAGCGACAGCGAAGATGAGAGTGTGGATGCGAAGAACA
AGGATAAACAAACAGGTGACGGTCGAGGTGGAGGACGTGGAGAGTCACGG
TGTGGGCGTCAAGGCGATCCTGGCAAGGGCTACGATAGCTGGAACGTGTA
TTTCCCTCTGTACTGGCTGATGTTGCTGACGCGACCCCGCGGCCAGTTGG
CGACCACGACGGAGAGTTCCGGTAAGGTCGCCAAGATGCGCAAGTTCCCC
AAGTTTTACGAGGAGTCCTTCAATCTCGGAAAAAATACCGTCGCCACACG
GCTCGACAAAGATCTCGTGGTGATAGTTCACAAAAGAGCTGCGAAAAAGT
TGCGAAGGAGAAGAAGCGGGCTTGCGACAGAGAAGAAAACTCGGAGAGGC
GCCACGGGAGGGGTAGCA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2739883..2740500+ >mRNA_C-linearis_contig10.593.1 ID=mRNA_C-linearis_contig10.593.1|Name=mRNA_C-linearis_contig10.593.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at C-linearis_contig10:2739883..2740500+ (Chordaria linearis ClinC8C monoicous)
ATGGTATACGATAGCGACAGCGAAGATGAGAGTGTGGATGCGAAGAACAA
GGATAAACAAACAGGTGACGGTCGAGGTGGAGGACGTGGAGAGTCACGGT
GTGGGCGTCAAGGCGATCCTGGCAAGGGCTACGATAGCTGGAACGTGTAT
TTCCCTCTGTACTGGCTGATGTTGCTGACGCGACCCCGCGGCCAGTTGGC
GACCACGACGGAGAGTTCCGGTAAGGTCGCCAAGATGCGCAAGTTCCCCA
AGTTTTACGAGGAGTCCTTCAATCTCGGAAAAAATACCGTCGCCACACGG
CTCGACAAAGATCTCGTGGTGATAGTTCACAAAAGAGCTGCGAAAAAGTT
GCGAAGGAGAAGAAGCGGGCTTGCGACAGAGAAGAAAACTCGGAGAGGCG
CCACGGGAGGGGTAGCAATGGTATACGATAGCGACAGCGAAGATGAGAGT
GTGGATGCGAAGAACAAGGATAAACAAACAGGTGACGGTCGAGGTGGAGG
ACGTGGAGAGTCACGGTGTGGGCGTCAAGGCGATCCTGGCAAGGGCTACG
ATAGCTGGAACGTGTATTTCCCTCTGTACTGGCTGATGTTGCTGACGCGA
CCCCGCGGCCAGTTGGCGACCACGACGGAGAGTTCCGGTAAGGTCGCCAA
GATGCGCAAGTTCCCCAAGTTTTACGAGGAGTCCTTCAATCTCGGAAAAA
ATACCGTCGCCACACGGCTCGACAAAGATCTCGTGGTGATAGTTCACAAA
AGAGCTGCGAAAAAGTTGCGAAGGAGAAGAAGCGGGCTTGCGACAGAGAA
GAAAACTCGGAGAGGCGCCACGGGAGGGGTAGCA back to top
|