mRNA_C-linearis_contig10.592.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.592.1
Unique NamemRNA_C-linearis_contig10.592.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2739024..2739590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size212
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.592.1prot_C-linearis_contig10.592.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2739031..2739590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.1901393-UTR-C-linearis_contig10:2739023..27390301622927324.1901393-UTR-C-linearis_contig10:2739023..2739030Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2739024..2739030 +
1690879626.6659853-UTR-C-linearis_contig10:2739023..27390301690879626.6659853-UTR-C-linearis_contig10:2739023..2739030Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2739024..2739030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.2005956-CDS-C-linearis_contig10:2739030..27390481622927324.2005956-CDS-C-linearis_contig10:2739030..2739048Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2739031..2739048 +
1690879626.6746576-CDS-C-linearis_contig10:2739030..27390481690879626.6746576-CDS-C-linearis_contig10:2739030..2739048Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2739031..2739048 +
1622927324.2118464-CDS-C-linearis_contig10:2739244..27393951622927324.2118464-CDS-C-linearis_contig10:2739244..2739395Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2739245..2739395 +
1690879626.6826887-CDS-C-linearis_contig10:2739244..27393951690879626.6826887-CDS-C-linearis_contig10:2739244..2739395Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2739245..2739395 +
1622927324.2220633-CDS-C-linearis_contig10:2739555..27395901622927324.2220633-CDS-C-linearis_contig10:2739555..2739590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2739556..2739590 +
1690879626.69032-CDS-C-linearis_contig10:2739555..27395901690879626.69032-CDS-C-linearis_contig10:2739555..2739590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2739556..2739590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.592.1

>prot_C-linearis_contig10.592.1 ID=prot_C-linearis_contig10.592.1|Name=mRNA_C-linearis_contig10.592.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=68bp
MAGGKVGEKVGENSEPVTDKGEPFNSQCSGEETGLMRRCERPSAKKSNFC
TLHGAQGRNYSSRARSKP
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mRNA from alignment at C-linearis_contig10:2739024..2739590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.592.1 ID=mRNA_C-linearis_contig10.592.1|Name=mRNA_C-linearis_contig10.592.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=567bp|location=Sequence derived from alignment at C-linearis_contig10:2739024..2739590+ (Chordaria linearis ClinC8C monoicous)
CGCGTGAATGGCGGGTGGAAAAGTGGTGAGTTCACAATCAATTGTCTGTG
AAATCGAGTTTTTTTCCAGGGCCAACTTGTGAAATCATCCATGAATTCAG
CCAGCCCCGTAATTCATCTGATTTATTCAAAAGATACGTCACATCATGTG
TGTCTGTGAATTGAAATTAATTCCATTTTGGTTTTCTCACTCTTTGTCCA
TTTTTGTTTGTGACGCGACAGGGTGAGAAGGTAGGTGAAAATTCTGAACC
AGTCACGGACAAGGGTGAGCCGTTCAACAGCCAGTGTTCAGGCGAAGAGA
CTGGCCTGATGAGGCGATGCGAACGGCCGTCTGCGAAGAAGTCGAACTTC
TGCACCCTTCACGGGGCTCAAGGTGTGTTTTTAAATTACGACTAAAGCAG
CTTGTGAAAGGTTTCAGCTTGTTGCAAAGTTGCAAAGTAACGCTGTATTA
TGTGTCAACTCCAAGCCGAAGTTGCTCACGGGTGGTGCCATAATGTTGGT
TTCTTGCGTCATGTTAATTTTCGTTTGTGCAGGTAGAAATTACTCCTCCC
GAGCGAGATCGAAGCCA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2739024..2739590+

>mRNA_C-linearis_contig10.592.1 ID=mRNA_C-linearis_contig10.592.1|Name=mRNA_C-linearis_contig10.592.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at C-linearis_contig10:2739024..2739590+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGGTGGAAAAGTGATGGCGGGTGGAAAAGTGGGTGAGAAGGTAGG
TGAAAATTCTGAACCAGTCACGGACAAGGGTGAGCCGTTCAACAGCCAGT
GTTCAGGCGAAGAGACTGGCCTGATGAGGCGATGCGAACGGCCGTCTGCG
AAGAAGTCGAACTTCTGCACCCTTCACGGGGCTCAAGGGTGAGAAGGTAG
GTGAAAATTCTGAACCAGTCACGGACAAGGGTGAGCCGTTCAACAGCCAG
TGTTCAGGCGAAGAGACTGGCCTGATGAGGCGATGCGAACGGCCGTCTGC
GAAGAAGTCGAACTTCTGCACCCTTCACGGGGCTCAAGGTAGAAATTACT
CCTCCCGAGCGAGATCGAAGCCAGTAGAAATTACTCCTCCCGAGCGAGAT
CGAAGCCA
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