Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 212 |
Cds size | 204 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927324.1901393-UTR-C-linearis_contig10:2739023..2739030 | 1622927324.1901393-UTR-C-linearis_contig10:2739023..2739030 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2739024..2739030 + |
1690879626.6659853-UTR-C-linearis_contig10:2739023..2739030 | 1690879626.6659853-UTR-C-linearis_contig10:2739023..2739030 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2739024..2739030 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927324.2005956-CDS-C-linearis_contig10:2739030..2739048 | 1622927324.2005956-CDS-C-linearis_contig10:2739030..2739048 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2739031..2739048 + |
1690879626.6746576-CDS-C-linearis_contig10:2739030..2739048 | 1690879626.6746576-CDS-C-linearis_contig10:2739030..2739048 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2739031..2739048 + |
1622927324.2118464-CDS-C-linearis_contig10:2739244..2739395 | 1622927324.2118464-CDS-C-linearis_contig10:2739244..2739395 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2739245..2739395 + |
1690879626.6826887-CDS-C-linearis_contig10:2739244..2739395 | 1690879626.6826887-CDS-C-linearis_contig10:2739244..2739395 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2739245..2739395 + |
1622927324.2220633-CDS-C-linearis_contig10:2739555..2739590 | 1622927324.2220633-CDS-C-linearis_contig10:2739555..2739590 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2739556..2739590 + |
1690879626.69032-CDS-C-linearis_contig10:2739555..2739590 | 1690879626.69032-CDS-C-linearis_contig10:2739555..2739590 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2739556..2739590 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.592.1 >prot_C-linearis_contig10.592.1 ID=prot_C-linearis_contig10.592.1|Name=mRNA_C-linearis_contig10.592.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=68bp
MAGGKVGEKVGENSEPVTDKGEPFNSQCSGEETGLMRRCERPSAKKSNFC TLHGAQGRNYSSRARSKP back to topmRNA from alignment at C-linearis_contig10:2739024..2739590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.592.1 ID=mRNA_C-linearis_contig10.592.1|Name=mRNA_C-linearis_contig10.592.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=567bp|location=Sequence derived from alignment at C-linearis_contig10:2739024..2739590+ (Chordaria linearis ClinC8C monoicous) CGCGTGAATGGCGGGTGGAAAAGTGGTGAGTTCACAATCAATTGTCTGTG
AAATCGAGTTTTTTTCCAGGGCCAACTTGTGAAATCATCCATGAATTCAG
CCAGCCCCGTAATTCATCTGATTTATTCAAAAGATACGTCACATCATGTG
TGTCTGTGAATTGAAATTAATTCCATTTTGGTTTTCTCACTCTTTGTCCA
TTTTTGTTTGTGACGCGACAGGGTGAGAAGGTAGGTGAAAATTCTGAACC
AGTCACGGACAAGGGTGAGCCGTTCAACAGCCAGTGTTCAGGCGAAGAGA
CTGGCCTGATGAGGCGATGCGAACGGCCGTCTGCGAAGAAGTCGAACTTC
TGCACCCTTCACGGGGCTCAAGGTGTGTTTTTAAATTACGACTAAAGCAG
CTTGTGAAAGGTTTCAGCTTGTTGCAAAGTTGCAAAGTAACGCTGTATTA
TGTGTCAACTCCAAGCCGAAGTTGCTCACGGGTGGTGCCATAATGTTGGT
TTCTTGCGTCATGTTAATTTTCGTTTGTGCAGGTAGAAATTACTCCTCCC
GAGCGAGATCGAAGCCA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2739024..2739590+ >mRNA_C-linearis_contig10.592.1 ID=mRNA_C-linearis_contig10.592.1|Name=mRNA_C-linearis_contig10.592.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at C-linearis_contig10:2739024..2739590+ (Chordaria linearis ClinC8C monoicous) ATGGCGGGTGGAAAAGTGATGGCGGGTGGAAAAGTGGGTGAGAAGGTAGG TGAAAATTCTGAACCAGTCACGGACAAGGGTGAGCCGTTCAACAGCCAGT GTTCAGGCGAAGAGACTGGCCTGATGAGGCGATGCGAACGGCCGTCTGCG AAGAAGTCGAACTTCTGCACCCTTCACGGGGCTCAAGGGTGAGAAGGTAG GTGAAAATTCTGAACCAGTCACGGACAAGGGTGAGCCGTTCAACAGCCAG TGTTCAGGCGAAGAGACTGGCCTGATGAGGCGATGCGAACGGCCGTCTGC GAAGAAGTCGAACTTCTGCACCCTTCACGGGGCTCAAGGTAGAAATTACT CCTCCCGAGCGAGATCGAAGCCAGTAGAAATTACTCCTCCCGAGCGAGAT CGAAGCCA back to top
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