mRNA_C-linearis_contig10.589.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: D7G8P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.570e-79 Identity = 142/182 (78.02%), Postives = 164/182 (90.11%), Query Frame = 1
Query: 1 MDEDVALAALLTALEDLHNIRNEMHA--SQGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGSLRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLREVLGDAKGQLPAE 540
MDED AL+ALLTAL+DLHNIRNEMH QGFLNMA+ARR+MGRNSVSVLDTRE+Y+AEVTI+I+ E SEGRL+ S+S+FSRNR+E A VV+RDGSLRQRGG A VEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVV+YAVEASNLAHRI++L+++L +AKGQ+P +
Sbjct: 1 MDEDAALSALLTALDDLHNIRNEMHTCLKQGFLNMARARRSMGRNSVSVLDTREEYAAEVTIAIE-EDTSEGRLQESRSMFSRNRVEPAGSAVVIRDGSLRQRGGGGAHVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQKML-EAKGQMPKD 180
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A7S2H454_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H454_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.210e-13 Identity = 55/173 (31.79%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 4 DEDVALAALLTALEDLHNIRNEMHAS--QGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGSLRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLREVLGD 516
D D L ++L+ ++ + + + + +GFLNMAKAR+++GR S++ LD RE A+ TI +CD I+ R+ P + +LR+RG + E + + A D M LF LVPPP+R++ + FT+ +E+ V A+NLA +I+ + L D
Sbjct: 4 DADSKLLSILSQTDEFYAEQQRIAKAIRKGFLNMAKARQSLGRGSLTALDCRENVCAQFTIDAHTDCD---------DIWRRHSDTLNAP----EEKALRRRGAG-GNGKTNEDIQSVSEGAEDHNDPMLLFGGLVPPPMRRAGQEFTAAIEHIVTAANLAAKIIESEKELRD 162
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A7S2BYK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.590e-12 Identity = 57/174 (32.76%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 7 EDVALAALLTALEDLHNIRNEMHAS--QGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGSLRQRG--GVVAPVEIEESLLQPDQDAPVRGDSMS---------LFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRI 489
ED AL AL ++ L+ + + S +GFLN+ KAR++MGRN++S L+ RE A+V + E E + ++ R+R V ++G++R+RG G+ P++ E+++ D P D++ LF LVPPP+RK+K +F VE+ + A+N+A I
Sbjct: 12 EDEALVALFEKVDGLYAEQQRIAKSMRKGFLNITKARQSMGRNALSALNCRELVDAQVRVDATHE-------EDAGMLWERHRESPGA--VASQNGAVRRRGAGGLSGPID-EDTVSSHTPDEPAADDAVQGAAQKNTLMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSI 175
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A835YMR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.050e-9 Identity = 61/174 (35.06%), Postives = 83/174 (47.70%), Query Frame = 1
Query: 25 ALLTALEDLHNIRNEMHA--SQGFLNMAKARRTMGRNS----VSVLDTREQYSAEVTISI---DAECDSEGRLEASK----SIFSRNRIEAA---TPPVVVRDGSLRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYL 498
ALL A ++LHN + E+ QGF NM KAR G + ++VLDTRE++ A VT+ + D + L A K F R + A + V SLRQR + A DSM LF LVPP LRK+K+NF+S ++Y A+ L R+ L
Sbjct: 28 ALLEAADELHNAKAELSLCLKQGFFNMTKARLAAGGGAHSAGITVLDTREEFHAAVTVELLDKDPDASPARELRALKLPAGHAFQRAGNDDAPHSSGGSVNGSSSLRQRNHAGSXXXXXXXXXXXXXAA--GKDSMQLFGGLVPPALRKAKRNFSSALDYVFLAAELTQRVALL 199
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A7S2S2U0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U0_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.610e-9 Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 1
Query: 82 QGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGS--LRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLREVLGDAKGQLPAERA 546
+GFLN+ KAR++MGR +++ LD RE+ A + S+D S+ +++ ++ R R A+ R G+ LR+RG + E+ D++ R D + LF LVPP LR+++ +F +++ + A+N+ HR + LR +GD P A
Sbjct: 41 RGFLNVTKARQSMGRGALTALDCREEMVA--SFSLDQSDVSQVDEQSALILWRRFRRVAS------RSGAKTLRRRGSTPPSSDEPENTSVDDREE-AREDPVLLFGGLVPPTLRRAQADFQVALDFYISAANVIHRAMQLRARIGDLPAASPGPEA 188
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: D7G8P8_ECTSI (HYPK_UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P8_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 5.680e-9 Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = -2
Query: 2115 LLAHSTEPSTESTQLKISAADVEQIQEELECSADEAKAGLIEASGDVVQALRHLLR 2282
L+ S EPSTEST LKISAAD+E ++EELE S +EAKA L++ GDVVQALR LL+
Sbjct: 43 LIPASAEPSTEST-LKISAADIEVLKEELEVSTEEAKAALLKRDGDVVQALRLLLQ 97
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A2C9M4G9_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9M4G9_BIOGL) HSP 1 Score: 56.2 bits (134), Expect = 2.780e-5 Identity = 52/172 (30.23%), Postives = 79/172 (45.93%), Query Frame = 1
Query: 82 QGFLNMAKARRTMGRNSVS---VLDTREQYSAEVTISIDAECDSEGRLEASKSIFSR--------NRIEAATPPVVVRDGSL-------------------RQRGGVVAPVEIEESLLQPDQDAPVR--GDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLR 501
QGFL+M++AR++MG +VS ++ S +V + D S + +F + E TPPV+ D S ++ G VAP ++E S D D R +S+SLF LVPP LR S+K+F ++ VE +NL HR+ L+
Sbjct: 3 QGFLDMSRARKSMGVKNVSADQIISANILASVKVNVDEDLIQPSNEEEVGERELFQMLQNADKKFDEQEKTTPPVISSDSSSGPRKRHTEKSSKSDPDKQDKENGTKVAP-QVESS---EDSDISNRVVTNSLSLFGILVPPTLRASQKHFNDSLKVCVELANLKHRLHILK 170 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.589.1 >prot_C-linearis_contig10.589.1 ID=prot_C-linearis_contig10.589.1|Name=mRNA_C-linearis_contig10.589.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp MDEDVALAALLTALEDLHNIRNEMHASQGFLNMAKARRTMGRNSVSVLDTback to top mRNA from alignment at C-linearis_contig10:2717328..2720464+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.589.1 ID=mRNA_C-linearis_contig10.589.1|Name=mRNA_C-linearis_contig10.589.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3137bp|location=Sequence derived from alignment at C-linearis_contig10:2717328..2720464+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2717328..2720464+ >mRNA_C-linearis_contig10.589.1 ID=mRNA_C-linearis_contig10.589.1|Name=mRNA_C-linearis_contig10.589.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig10:2717328..2720464+ (Chordaria linearis ClinC8C monoicous)back to top |