mRNA_C-linearis_contig10.589.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: D7G8P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.570e-79 Identity = 142/182 (78.02%), Postives = 164/182 (90.11%), Query Frame = 1 Query: 1 MDEDVALAALLTALEDLHNIRNEMHA--SQGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGSLRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLREVLGDAKGQLPAE 540
MDED AL+ALLTAL+DLHNIRNEMH QGFLNMA+ARR+MGRNSVSVLDTRE+Y+AEVTI+I+ E SEGRL+ S+S+FSRNR+E A VV+RDGSLRQRGG A VEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVV+YAVEASNLAHRI++L+++L +AKGQ+P +
Sbjct: 1 MDEDAALSALLTALDDLHNIRNEMHTCLKQGFLNMARARRSMGRNSVSVLDTREEYAAEVTIAIE-EDTSEGRLQESRSMFSRNRVEPAGSAVVIRDGSLRQRGGGGAHVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQKML-EAKGQMPKD 180
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A7S2H454_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H454_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.210e-13 Identity = 55/173 (31.79%), Postives = 91/173 (52.60%), Query Frame = 1 Query: 4 DEDVALAALLTALEDLHNIRNEMHAS--QGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGSLRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLREVLGD 516
D D L ++L+ ++ + + + + +GFLNMAKAR+++GR S++ LD RE A+ TI +CD I+ R+ P + +LR+RG + E + + A D M LF LVPPP+R++ + FT+ +E+ V A+NLA +I+ + L D
Sbjct: 4 DADSKLLSILSQTDEFYAEQQRIAKAIRKGFLNMAKARQSLGRGSLTALDCRENVCAQFTIDAHTDCD---------DIWRRHSDTLNAP----EEKALRRRGAG-GNGKTNEDIQSVSEGAEDHNDPMLLFGGLVPPPMRRAGQEFTAAIEHIVTAANLAAKIIESEKELRD 162
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A7S2BYK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.590e-12 Identity = 57/174 (32.76%), Postives = 95/174 (54.60%), Query Frame = 1 Query: 7 EDVALAALLTALEDLHNIRNEMHAS--QGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGSLRQRG--GVVAPVEIEESLLQPDQDAPVRGDSMS---------LFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRI 489
ED AL AL ++ L+ + + S +GFLN+ KAR++MGRN++S L+ RE A+V + E E + ++ R+R V ++G++R+RG G+ P++ E+++ D P D++ LF LVPPP+RK+K +F VE+ + A+N+A I
Sbjct: 12 EDEALVALFEKVDGLYAEQQRIAKSMRKGFLNITKARQSMGRNALSALNCRELVDAQVRVDATHE-------EDAGMLWERHRESPGA--VASQNGAVRRRGAGGLSGPID-EDTVSSHTPDEPAADDAVQGAAQKNTLMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSI 175
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A835YMR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.050e-9 Identity = 61/174 (35.06%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 25 ALLTALEDLHNIRNEMHA--SQGFLNMAKARRTMGRNS----VSVLDTREQYSAEVTISI---DAECDSEGRLEASK----SIFSRNRIEAA---TPPVVVRDGSLRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYL 498
ALL A ++LHN + E+ QGF NM KAR G + ++VLDTRE++ A VT+ + D + L A K F R + A + V SLRQR + A DSM LF LVPP LRK+K+NF+S ++Y A+ L R+ L
Sbjct: 28 ALLEAADELHNAKAELSLCLKQGFFNMTKARLAAGGGAHSAGITVLDTREEFHAAVTVELLDKDPDASPARELRALKLPAGHAFQRAGNDDAPHSSGGSVNGSSSLRQRNHAGSXXXXXXXXXXXXXAA--GKDSMQLFGGLVPPALRKAKRNFSSALDYVFLAAELTQRVALL 199
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A7S2S2U0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U0_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.610e-9 Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 1 Query: 82 QGFLNMAKARRTMGRNSVSVLDTREQYSAEVTISIDAECDSEGRLEASKSIFSRNRIEAATPPVVVRDGS--LRQRGGVVAPVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLREVLGDAKGQLPAERA 546
+GFLN+ KAR++MGR +++ LD RE+ A + S+D S+ +++ ++ R R A+ R G+ LR+RG + E+ D++ R D + LF LVPP LR+++ +F +++ + A+N+ HR + LR +GD P A
Sbjct: 41 RGFLNVTKARQSMGRGALTALDCREEMVA--SFSLDQSDVSQVDEQSALILWRRFRRVAS------RSGAKTLRRRGSTPPSSDEPENTSVDDREE-AREDPVLLFGGLVPPTLRRAQADFQVALDFYISAANVIHRAMQLRARIGDLPAASPGPEA 188
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: D7G8P8_ECTSI (HYPK_UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P8_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 5.680e-9 Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = -2 Query: 2115 LLAHSTEPSTESTQLKISAADVEQIQEELECSADEAKAGLIEASGDVVQALRHLLR 2282
L+ S EPSTEST LKISAAD+E ++EELE S +EAKA L++ GDVVQALR LL+
Sbjct: 43 LIPASAEPSTEST-LKISAADIEVLKEELEVSTEEAKAALLKRDGDVVQALRLLLQ 97
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Match: A0A2C9M4G9_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9M4G9_BIOGL) HSP 1 Score: 56.2 bits (134), Expect = 2.780e-5 Identity = 52/172 (30.23%), Postives = 79/172 (45.93%), Query Frame = 1 Query: 82 QGFLNMAKARRTMGRNSVS---VLDTREQYSAEVTISIDAECDSEGRLEASKSIFSR--------NRIEAATPPVVVRDGSL-------------------RQRGGVVAPVEIEESLLQPDQDAPVR--GDSMSLFATLVPPPLRKSKKNFTSVVEYAVEASNLAHRILYLR 501
QGFL+M++AR++MG +VS ++ S +V + D S + +F + E TPPV+ D S ++ G VAP ++E S D D R +S+SLF LVPP LR S+K+F ++ VE +NL HR+ L+
Sbjct: 3 QGFLDMSRARKSMGVKNVSADQIISANILASVKVNVDEDLIQPSNEEEVGERELFQMLQNADKKFDEQEKTTPPVISSDSSSGPRKRHTEKSSKSDPDKQDKENGTKVAP-QVESS---EDSDISNRVVTNSLSLFGILVPPTLRASQKHFNDSLKVCVELANLKHRLHILK 170 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.589.1 >prot_C-linearis_contig10.589.1 ID=prot_C-linearis_contig10.589.1|Name=mRNA_C-linearis_contig10.589.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp MDEDVALAALLTALEDLHNIRNEMHASQGFLNMAKARRTMGRNSVSVLDTback to top mRNA from alignment at C-linearis_contig10:2717328..2720464+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.589.1 ID=mRNA_C-linearis_contig10.589.1|Name=mRNA_C-linearis_contig10.589.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3137bp|location=Sequence derived from alignment at C-linearis_contig10:2717328..2720464+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2717328..2720464+ >mRNA_C-linearis_contig10.589.1 ID=mRNA_C-linearis_contig10.589.1|Name=mRNA_C-linearis_contig10.589.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig10:2717328..2720464+ (Chordaria linearis ClinC8C monoicous)back to top |