mRNA_C-linearis_contig10.582.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.582.1
Unique NamemRNA_C-linearis_contig10.582.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.582.1 vs. uniprot
Match: D8LNL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL1_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.820e-62
Identity = 123/197 (62.44%), Postives = 144/197 (73.10%), Query Frame = 1 
Query:   70 PSAAGPRAPMKGSEGQQWVP----RSARAYTAADHAS--VANAREHH-ASLVYEIVFPQPGALGLNLRSYFVQNPAGARLGLPEYGSLVVLDCQNAWLKTVVNSGDLLISINGEKLTGTNFSFADSISLCSRASLPRMFRFARLGDGASSAEIELALAGDI-CAVFDAVDTPQKRLVTAQLHPSAPPFFFLNPPTRQ 636
            PS   P+AP  G EG +  P      A A  AADHAS  VA A +H    LVYEI FPQ GALGLNLR+Y  + PAGARLGLP YGSL VLD Q  +LK +V  GDLL++ING+KLTG+ FSF D+I++CSRASLPR+ RFAR+  GAS+AEIE A   D+ CA FDA+D PQ+RLVTAQLHPSAP  FFLNPPTR+
Sbjct:   38 PSRQLPKAPGMGVEGPREEPWAAAEGAAAAAAADHASANVAKAGDHDDTGLVYEIAFPQAGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKAIVEPGDLLVAINGKKLTGSRFSFEDAIAVCSRASLPRVLRFARM-KGASAAEIECAFGADVVCATFDAMDAPQQRLVTAQLHPSAPSHFFLNPPTRR 233
[Close]
BLAST of mRNA_C-linearis_contig10.582.1 vs. uniprot
Match: A0A6H5K263_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K263_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.320e-13
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:  157 DH--ASVANAREHH-ASLVYEIVFPQPGALGLNLRSYFVQNPAGARLGLPEYGSLVVLDCQNAWLK 345
            DH  A+VA A +H  A LVYEI FPQPGALGLNLR+Y  + PAGARLGLP YGSL VLD Q  +LK
Sbjct:  280 DHPSANVAKAGDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLK 345
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNL1_ECTSI1.820e-6262.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K263_9PHAE1.320e-1368.18AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2669619..2673220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-22_002940.1
Exons7
Model size1728
Cds size561
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927342.8827293-UTR-C-linearis_contig10:2669618..26706891622927342.8827293-UTR-C-linearis_contig10:2669618..2670689Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2669619..2670689 -
1690879639.4953694-UTR-C-linearis_contig10:2669618..26706891690879639.4953694-UTR-C-linearis_contig10:2669618..2670689Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2669619..2670689 -
1622927342.9659307-UTR-C-linearis_contig10:2672615..26726711622927342.9659307-UTR-C-linearis_contig10:2672615..2672671Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2672616..2672671 -
1690879639.5665455-UTR-C-linearis_contig10:2672615..26726711690879639.5665455-UTR-C-linearis_contig10:2672615..2672671Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2672616..2672671 -
1622927342.975516-UTR-C-linearis_contig10:2673180..26732201622927342.975516-UTR-C-linearis_contig10:2673180..2673220Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2673181..2673220 -
1690879639.5767648-UTR-C-linearis_contig10:2673180..26732201690879639.5767648-UTR-C-linearis_contig10:2673180..2673220Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2673181..2673220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927342.8926702-CDS-C-linearis_contig10:2670689..26707941622927342.8926702-CDS-C-linearis_contig10:2670689..2670794Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2670690..2670794 -
1690879639.5087385-CDS-C-linearis_contig10:2670689..26707941690879639.5087385-CDS-C-linearis_contig10:2670689..2670794Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2670690..2670794 -
1622927342.9025693-CDS-C-linearis_contig10:2671117..26712111622927342.9025693-CDS-C-linearis_contig10:2671117..2671211Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2671118..2671211 -
1690879639.519921-CDS-C-linearis_contig10:2671117..26712111690879639.519921-CDS-C-linearis_contig10:2671117..2671211Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2671118..2671211 -
1622927342.915644-CDS-C-linearis_contig10:2671359..26714721622927342.915644-CDS-C-linearis_contig10:2671359..2671472Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2671360..2671472 -
1690879639.5290844-CDS-C-linearis_contig10:2671359..26714721690879639.5290844-CDS-C-linearis_contig10:2671359..2671472Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2671360..2671472 -
1622927342.9307065-CDS-C-linearis_contig10:2671691..26718261622927342.9307065-CDS-C-linearis_contig10:2671691..2671826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2671692..2671826 -
1690879639.5371313-CDS-C-linearis_contig10:2671691..26718261690879639.5371313-CDS-C-linearis_contig10:2671691..2671826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2671692..2671826 -
1622927342.9453306-CDS-C-linearis_contig10:2672224..26723171622927342.9453306-CDS-C-linearis_contig10:2672224..2672317Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2672225..2672317 -
1690879639.5461347-CDS-C-linearis_contig10:2672224..26723171690879639.5461347-CDS-C-linearis_contig10:2672224..2672317Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2672225..2672317 -
1622927342.9562023-CDS-C-linearis_contig10:2672594..26726151622927342.9562023-CDS-C-linearis_contig10:2672594..2672615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2672595..2672615 -
1690879639.5559604-CDS-C-linearis_contig10:2672594..26726151690879639.5559604-CDS-C-linearis_contig10:2672594..2672615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2672595..2672615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.582.1prot_C-linearis_contig10.582.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2670690..2672615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.582.1

>prot_C-linearis_contig10.582.1 ID=prot_C-linearis_contig10.582.1|Name=mRNA_C-linearis_contig10.582.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=187bp
MKGSEGQQWVPRSARAYTAADHASVANAREHHASLVYEIVFPQPGALGLN
LRSYFVQNPAGARLGLPEYGSLVVLDCQNAWLKTVVNSGDLLISINGEKL
TGTNFSFADSISLCSRASLPRMFRFARLGDGASSAEIELALAGDICAVFD
AVDTPQKRLVTAQLHPSAPPFFFLNPPTRQPARASQ*
back to top

mRNA from alignment at C-linearis_contig10:2669619..2673220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.582.1 ID=mRNA_C-linearis_contig10.582.1|Name=mRNA_C-linearis_contig10.582.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3602bp|location=Sequence derived from alignment at C-linearis_contig10:2669619..2673220- (Chordaria linearis ClinC8C monoicous)
CCCGCGGGCCGAGGAAGGAGGAAGGGAAACACCAGCTAAGGTGAGAGAGT
CGATGCGTGGAGACTTGAACTCTAAGTCCGTGTTCCGACATTGTCGACCT
ACTTGCCACTTACCCCCTCCTGTGTAACCCCGGTTGGTTCTAGTTGTACA
GAAAAATACACTGAACAAGGGTAGTACTCTAAATACACCGCAACGTGTAG
TACACGTCTCGCCTTGATCGGAAAGGGACTGCTGTCGCCAAAATAAATGG
GACGAAAACACACACACACACTTTGCGGTTGGGTGCGGAAGAAACAAGAA
CACAACAAGTAATCGAACTCTGCAGTTGCAGTGCCTTCCATATCTTTATC
TTTACAGCAAACGTATCAAACATCGTACGTTGCTACCGCAGTGCTGCTGT
ACTCGACGCAACGTAATTTTTTCGAACCGACAATCACCCTGTTTCGAGCT
TACCTCCCATCCAAGCGGGGTGAGACAACCGGACCACTACAAACAAGGCT
TTGGATGTTGTGTGTTTTGTTCTTTCTTGACATTTTCTATGCCCGAAAGA
TTCTCAGGAGTGGGGTATTCAGGCGGCACCCTCAGCCGCAGGACCAAGGG
CGCCGATGAAGGGGTCGGAGGGCCAGGTAAATAAGTACAAGCGCCACGGT
TGTTGCCTTCATGGTGAAGGAGCTGAAACGCCACGGTTGTTGCCGGGCCA
CTTCTTTGTCAGCACGACACGGCAAGAGTTGCCCGCATTCCTGCATGTCG
TCTACGCGCGGTTCCAACAAGATGCATGTTTGTTTTGAGCACCGTCCCAA
AATAACATGGATGTGCCGTGTCTTAACGTCTCCGGTTTCGGGAATTTGGG
TTCTAACTTCAGCCCCCCTTGCGTTGCGCGAATGTGTGTCGCCTACCTCA
CAGCAGTGGGTACCACGGTCAGCCCGCGCATACACGGCGGCAGATCACGC
ATCGGTTGCGAACGCGCGAGAACACCACGCGAGCCTAGTTTACGAGGTGT
GAGTTGAGGCGTGCATGCGGTTATGAAGTCGACCAGGGCTATACGTAGTT
AGCATCAGCCTTGAGCGGATTGTGGGCGAGCTTAATGATACGGTACCACG
GAACCAGTGTCGTCATGGTTTACGCTGTGGGTTTTCTGGCGGAGCGGGGT
CGCTGTCGTTCATACATTGTGCGTCCTCAGCAAAAACTACAGGTGTCGAA
TCTGGAGAAGACGGGCCTACCTTCTTTGCCCCTGACTTTTATATTACTCT
TCTTGATACTCGTGAGCAGAATCATCAATTGCATACAGACGGTGATTTCA
CACCATGCTTGAACAGACGAGTTGGAGCGCGAGTTGAGCGCCACAAACTA
CGTAGGCTCGACCACCCCCCGCCCCCCGTGTTTTGTCGTTTCAGATAGTT
TTCCCACAACCAGGCGCACTGGGGCTCAACCTTAGATCCTACTTCGTGCA
GAACCCAGCTGGAGCACGACTTGGCCTACCCGAATATGGGAGCCTGGTGG
TGCTGGACTGTCAGAATGCCTGGTTAAAGGTAAGTCGGCGTAGACCCGAT
CGCTCTGGATTGAAAGGGCGCGCAGTCCAGGCGGATATTATGAAGAGTGA
ATTTGCTCGGGGATAAGAGCGTTGCCGTTGTACTCTTGACGTAAACGCGC
GACACGTCCTGTTCCAGCGAGATCGTTTGCGTAGGGTCTGTCGGCCAATG
TTTCAATAATTCCTATGCCCGCCTGCTGCTCTATTTAATCATTGTCAGAC
CGTGGTCAACAGTGGCGACCTCCTGATCTCAATCAATGGGGAGAAACTGA
CGGGCACCAACTTCAGCTTTGCCGACAGCATATCGCTGTGCAGTAGAGCG
TCCTTGCCAAGGTGAAAACGAGGTTTCCCTGCGATGCGGGACTGGGCGAC
AAATAATGTTCGTTCAGTTTCATGCGGCGCGATTATTTGCCGACACAATT
GGTGAATTCGACAACCGCCATATCTGAAACATCAGTACGCCCGTTCTATG
CGACTTCAGGATGTTCCGGTTCGCGAGGTTGGGCGATGGGGCGTCTTCCG
CGGAGATCGAGCTCGCTTTGGCGGGTGATATCTGCGCCGTGTTTGATGCC
GTGGTGAGTCTCTGTGAGAAGCGGAGGAGAGTTGAGATGACAGCGAGCAA
ACTTGAGATGGGCTTGTGCCTGACGTTTTCGCCGTTCACCGTCGTTATGC
CATGATTCTCTTGGAGAACGCCGCGGCCTTTTGGGGACTTCGCTGCCAGC
GAATGGGCTGTCTTAATTCTAGAAAAGGCATCCGGTCCAGCGTAGGGTTG
CCGCGAGAGCTGGAAGCTGTTGCGGATCGCCTGGTTTGTGTATGCCAGCG
TTATTGGGTCACGACGATAGCACATCTGAAGGATTTTCACAGCAGTTTTC
CCTCTCGTCTTCACCCTTGCATGCAGGACACACCGCAGAAGCGCCTGGTG
ACGGCGCAACTGCATCCTTCCGCTCCACCTTTCTTTTTCCTGAACCCACC
GACCAGACAGCCTGCTCGTGCGTCGCAGTAGACAACTAGGCTACGACTGC
AAGCACCAAGGATGCGGCAGTGTATACAAGAGGGCCTCTCAGCTACTAAA
TAAGACTTGATTGGCTCCTTTCGCTCCACCTTCGTCCTCCTTCAGCAGTC
GCGGCTATCGTCGGCTTCATAAACGTTCGGTGGACACAAAGGCGTTTTCG
AAAGTAGACAGGCGTGGTGTCGAAGCTCAAGAAATGCGGTAGTGAGATTC
GGGCGGGTTTGCTTGAACCTCTGGAAGAACCTCCATGTTTTGCTGTATAG
CAGCAACAGCAAATGAGGTCAGCCTACGGTACCACTAGAGCGCCTGAGGC
TACCTTCCGTTGTTTTACGCTCTTTTTTTTCGGAAGGCGCGAAGAAGGCG
CTCCTTGTTTTGTTTCGTTTTGGGCAAAAATGTATCTACATGTTGAGGAG
ACAAGATTAAATCAATCTCCGGTATATACCAAATCAGTACAATACAAAGT
TGTCGAGGGTTTCGTTTTTCGCTGAACATGGTTTTCGAGGTAAAAAAAGG
TGTGCAAGCGAACCCTAGATCGGCAGCAGCATTAAGCAGTGTGCAACCAA
AAAAGGTATTGAGCTAGACATCCTGAAGAGGGTGTGACAATGAATTCTCT
CAGTGGAGGTGTGCGCACACAGCAGCAGTAGGTGGTGCGAGACAATGCAT
GCGGCATTCGAAATGGTGAGGGATAAAAAAAAAAAAATCGAATCTCGGGG
GGGGGCGCGGCTGTTGTATACTCTGTAATGTATATGCCTCCGGCATTGTA
GGCGGGTGTGCGAAGCCTCCGGCTTATCTTAGTCACCTCTCCTCCACTAG
CGTGGTACCTGGTTTTTCTGGTGTTTTCCAACACCCTTTATTTTTCTTTC
GAGTGGTAGAATATGTAGGCCTATGTACCAGTATGTACCCTATTTGTCTG
ATTTAGCGCCAGCGAGACGCGACCCCTCGGGGCCCAGTTTAGTATCGCAG
GGCGCGTATGTACATAATATTCTGCTTGAGTTTCTTTGCGGCGTCGAGTG
TGCCCAGTTTTGTGACCACGGGCTCCCATGGATGTTTTGGAATAGAGAGC
TA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2669619..2673220-

>mRNA_C-linearis_contig10.582.1 ID=mRNA_C-linearis_contig10.582.1|Name=mRNA_C-linearis_contig10.582.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at C-linearis_contig10:2669619..2673220- (Chordaria linearis ClinC8C monoicous)
ATGAAGGGGTCGGAGGGCCAGATGAAGGGGTCGGAGGGCCAGCAGTGGGT
ACCACGGTCAGCCCGCGCATACACGGCGGCAGATCACGCATCGGTTGCGA
ACGCGCGAGAACACCACGCGAGCCTAGTTTACGAGCAGTGGGTACCACGG
TCAGCCCGCGCATACACGGCGGCAGATCACGCATCGGTTGCGAACGCGCG
AGAACACCACGCGAGCCTAGTTTACGAGATAGTTTTCCCACAACCAGGCG
CACTGGGGCTCAACCTTAGATCCTACTTCGTGCAGAACCCAGCTGGAGCA
CGACTTGGCCTACCCGAATATGGGAGCCTGGTGGTGCTGGACTGTCAGAA
TGCCTGGTTAAAGATAGTTTTCCCACAACCAGGCGCACTGGGGCTCAACC
TTAGATCCTACTTCGTGCAGAACCCAGCTGGAGCACGACTTGGCCTACCC
GAATATGGGAGCCTGGTGGTGCTGGACTGTCAGAATGCCTGGTTAAAGAC
CGTGGTCAACAGTGGCGACCTCCTGATCTCAATCAATGGGGAGAAACTGA
CGGGCACCAACTTCAGCTTTGCCGACAGCATATCGCTGTGCAGTAGAGCG
TCCTTGCCAAGACCGTGGTCAACAGTGGCGACCTCCTGATCTCAATCAAT
GGGGAGAAACTGACGGGCACCAACTTCAGCTTTGCCGACAGCATATCGCT
GTGCAGTAGAGCGTCCTTGCCAAGGATGTTCCGGTTCGCGAGGTTGGGCG
ATGGGGCGTCTTCCGCGGAGATCGAGCTCGCTTTGGCGGGTGATATCTGC
GCCGTGTTTGATGCCGTGGATGTTCCGGTTCGCGAGGTTGGGCGATGGGG
CGTCTTCCGCGGAGATCGAGCTCGCTTTGGCGGGTGATATCTGCGCCGTG
TTTGATGCCGTGGACACACCGCAGAAGCGCCTGGTGACGGCGCAACTGCA
TCCTTCCGCTCCACCTTTCTTTTTCCTGAACCCACCGACCAGACAGCCTG
CTCGTGCGTCGCAGTAGGACACACCGCAGAAGCGCCTGGTGACGGCGCAA
CTGCATCCTTCCGCTCCACCTTTCTTTTTCCTGAACCCACCGACCAGACA
GCCTGCTCGTGCGTCGCAGTAG
back to top