mRNA_C-linearis_contig10.578.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.578.1
Unique NamemRNA_C-linearis_contig10.578.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Match: A0A6H5JVZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ4_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.620e-49
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = -1 
Query:    1 FYFKYESSFKEVCESPGELLRTVNGEVGEYVKSICFVILQFGTARATSVCPPYESMRLQCLRANAVLGYWQDGCKK------------------TTPPRDFKDQGWGVDPTLKNFASLD 303
            FYF+YE SFK+VCESPG++LR +NGEV EYVK I FVIL+ GTAR+TSVCP YESMRLQCLRANAVLGYWQDGCK+                  T PPRDFKDQGWGVDPTLKNFASL+
Sbjct:  414 FYFRYEVSFKDVCESPGDMLRMLNGEVQEYVKLIGFVILKHGTARSTSVCPAYESMRLQCLRANAVLGYWQDGCKESXXXXXXXXXXXXXXXXXTVPPRDFKDQGWGVDPTLKNFASLE 532
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BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Match: A0A6H5KR74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR74_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 7.860e-28
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = -1 
Query:   19 FYFKYESSFKEVCESPGELLRTVNGEVGEYVKSICFVILQFGTARATSVCPPYESMRLQCLRANAVLGYWQDGCKKTTPPRDFKDQGWGVDPTLK 303
            FYF+YE++F  V  +PG+LLR+VN  V  YV  I   I++ G  R T +CP Y SMR QCLR N+V GYWQDG K   P RDF  +GWG++P  K
Sbjct:  142 FYFRYEAAFAGVATTPGDLLRSVNDSVRNYVDLIRVAIVKLGKKRTTDICPTYRSMREQCLRMNSVDGYWQDGFKDHMPERDFNGKGWGINPKAK 236
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BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Match: A0A6H5JQD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.050e-25
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = -1 
Query:   19 FYFKYESSFKEVCESPGELLRTVNGEVGEYVKSICFVILQFGTARATSVCPPYESMRLQCLRANAVLGYWQDGCKKTTPPRDFKDQGWGVDPTLK 303
            FYF+YE++F  V  +PG+LLR+VN  V  YV  I   I++ G    T  CP Y SMR QCLR  +V GYWQDG K   P RDF  +GWG+DP  K
Sbjct:  377 FYFRYEAAFAGVATTPGDLLRSVNDSVRNYVDLIRVAIVKLGKKWTTDTCPTYRSMREQCLRMKSVDGYWQDGFKDHMPERDFNRKGWGIDPKAK 471
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BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Match: A0A6H5L5L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.390e-25
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = -1 
Query:   19 FYFKYESSFKEVCESPGELLRTVNGEVGEYVKSICFVILQFGTARATSVCPPYESMRLQCLRANAVLGYWQDGCKKTTPPRDFKDQGWGVDPTLK 303
            FYF+YE++F  V  +PG+LLR+VN  V  YV  I   I++ G  R T  CP Y SMR QCLR   V GYWQDG K   P RDF  +GWG++P  K
Sbjct:  543 FYFRYEAAFAGVTTTPGDLLRSVNDSVRNYVDLIRVAIVKLGKKRTTDTCPTYRSMREQCLRMKFVDGYWQDGFKDHMPERDFNGKGWGINPKAK 637
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BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Match: A0A6H5K509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K509_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.150e-12
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = -1 
Query:  100 FYFKYESSFKEVCESPGELLRTVNGEVGEYVKSICFVILQFGTARATSVCPPYESMRLQCLRANAVLG 303
            FYF+YE++F  V  +PG+LLR+VN  V  YV  I   I++ G  R T  CP   SMR QCLR  +V G
Sbjct:   42 FYFRYEAAFAGVATTPGDLLRSVNDSVKNYVDLIRVAIVKLGKKRTTDTCPTSRSMREQCLRIKSVDG 109
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BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Match: A0A6H5JM20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM20_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.330e-6
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = -1 
Query:  151 FYFKYESSFKEVCESPGELLRTVNGEVGEYVKSICFVILQFGTARATSVCP 303
            FYF+YE++F  V  +PG+LLR+VN  V  YV  I   I++ G  R T  CP
Sbjct:  747 FYFRYEAAFAGVATTPGDLLRSVNDSVRNYVDLIRVAIVKLGKKRTTDTCP 797
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JVZ4_9PHAE2.620e-4970.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR74_9PHAE7.860e-2852.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQD3_9PHAE5.050e-2551.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L2_9PHAE5.390e-2551.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K509_9PHAE3.150e-1248.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM20_9PHAE6.330e-647.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2618216..2618518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.369994-CDS-C-linearis_contig10:2618215..26185181622927326.369994-CDS-C-linearis_contig10:2618215..2618518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2618216..2618518 +
1690879627.8354065-CDS-C-linearis_contig10:2618215..26185181690879627.8354065-CDS-C-linearis_contig10:2618215..2618518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2618216..2618518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.578.1prot_C-linearis_contig10.578.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2618216..2618518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.578.1

>prot_C-linearis_contig10.578.1 ID=prot_C-linearis_contig10.578.1|Name=mRNA_C-linearis_contig10.578.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
VEGSKVLQGRVDAPPLILEIPGWRGLLATVLPIPKHCVGSQALEAHGLVR
GADGCSPGCAELKDDEADGLHVFAHFAVDGPQQLARRLANLLEGRLVLEV
E
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mRNA from alignment at C-linearis_contig10:2618216..2618518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.578.1 ID=mRNA_C-linearis_contig10.578.1|Name=mRNA_C-linearis_contig10.578.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at C-linearis_contig10:2618216..2618518+ (Chordaria linearis ClinC8C monoicous)
GTCGAGGGAAGCAAAGTTCTTCAAGGTCGGGTCGACGCCCCACCCCTGAT
CCTTGAAATCCCTGGGTGGCGTGGTCTTCTTGCAACCGTCCTGCCAATAC
CCAAGCACTGCGTTGGCTCGCAGGCACTGGAGGCGCATGGACTCGTACGG
GGGGCAGACGGATGTAGCCCGGGCTGTGCCGAACTGAAGGATGACGAAGC
AGATGGACTTCACGTATTCGCCCACTTCGCCGTTGACGGTCCGCAGCAAC
TCGCCAGGCGACTCGCAAACCTCCTTGAAGGAAGACTCGTACTTGAAGTA
GAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2618216..2618518+

>mRNA_C-linearis_contig10.578.1 ID=mRNA_C-linearis_contig10.578.1|Name=mRNA_C-linearis_contig10.578.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig10:2618216..2618518+ (Chordaria linearis ClinC8C monoicous)
GTCGAGGGAAGCAAAGTTCTTCAAGGTCGGGTCGACGCCCCACCCCTGAT
CCTTGAAATCCCTGGGTGGCGTGGTCTTCTTGCAACCGTCCTGCCAATAC
CCAAGCACTGCGTTGGCTCGCAGGCACTGGAGGCGCATGGACTCGTACGG
GGGGCAGACGGATGTAGCCCGGGCTGTGCCGAACTGAAGGATGACGAAGC
AGATGGACTTCACGTATTCGCCCACTTCGCCGTTGACGGTCCGCAGCAAC
TCGCCAGGCGACTCGCAAACCTCCTTGAAGGAAGACTCGTACTTGAAGTA
GAAGTCGAGGGAAGCAAAGTTCTTCAAGGTCGGGTCGACGCCCCACCCCT
GATCCTTGAAATCCCTGGGTGGCGTGGTCTTCTTGCAACCGTCCTGCCAA
TACCCAAGCACTGCGTTGGCTCGCAGGCACTGGAGGCGCATGGACTCGTA
CGGGGGGCAGACGGATGTAGCCCGGGCTGTGCCGAACTGAAGGATGACGA
AGCAGATGGACTTCACGTATTCGCCCACTTCGCCGTTGACGGTCCGCAGC
AACTCGCCAGGCGACTCGCAAACCTCCTTGAAGGAAGACTCGTACTTGAA
GTAGAA
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