mRNA_C-linearis_contig10.576.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.576.1
Unique NamemRNA_C-linearis_contig10.576.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2606045..2607232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.0900602-CDS-C-linearis_contig10:2606044..26061791622927324.0900602-CDS-C-linearis_contig10:2606044..2606179Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2606045..2606179 -
1690879626.6145778-CDS-C-linearis_contig10:2606044..26061791690879626.6145778-CDS-C-linearis_contig10:2606044..2606179Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2606045..2606179 -
1622927324.103934-CDS-C-linearis_contig10:2607139..26072321622927324.103934-CDS-C-linearis_contig10:2607139..2607232Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2607140..2607232 -
1690879626.6232347-CDS-C-linearis_contig10:2607139..26072321690879626.6232347-CDS-C-linearis_contig10:2607139..2607232Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2607140..2607232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.576.1prot_C-linearis_contig10.576.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2606045..2607232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.576.1

>prot_C-linearis_contig10.576.1 ID=prot_C-linearis_contig10.576.1|Name=mRNA_C-linearis_contig10.576.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp
PSAVQEKLCFALSCALRRASARRTICTSTAGPRWGRSLKQQLSKQTKQPN
PPQPRQSNPLQQKQLKQSKKTCRPGP
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mRNA from alignment at C-linearis_contig10:2606045..2607232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.576.1 ID=mRNA_C-linearis_contig10.576.1|Name=mRNA_C-linearis_contig10.576.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1188bp|location=Sequence derived from alignment at C-linearis_contig10:2606045..2607232- (Chordaria linearis ClinC8C monoicous)
CCATCCGCCGTCCAAGAGAAGCTCTGCTTCGCGTTGTCGTGCGCCTTGCG
GAGGGCGTCCGCGAGACGCACGATCTGCACCTCGACAGCCGGCGCGAAGG
TAGATGCGTCGATCAGAAGACGCTCCATGGTGGTGGTGCCGTATGGCGTT
CCAACGGCGAAGAGGGTGTCGATGCCGGCGTCGTGAACCGCTTTGGCGTC
GGCGTCCTCGAAAGTGCCTCCCGCTGCACGACATCCCTCAAATAGGCTCG
CGTAAAGCGGGAGTCGCCCGGCTGGAAAAAACGGCGGGCTTGTGCAGTCG
CTGAACGGGTGCACGGACTACCGGGAGGGCTGGGGGAAGAGGCCGACCAA
GAAACCGGTGGGGCGCGGGCGACACCCGCGTATGTCGCCGAAGATTCCGG
CCCGGGGACGACCGCAGCCGTCCGTGAAGAGCGCTGAGATCGACGCGCAG
AAGCACGAGGCTCCGGGGAAGGGGCTCGAGAGGATGCCCGTGACGAGTGG
TCGTCGCGGTTGCTGCGGCAAACGGCCCGGAGCCGGACGTTTTCTTTCTG
CTGCTGCAACAGCTTGCCGACCTCGCGCTGTCCTTTCTCGCTGGCACGAG
TGTACGCCAAAGCCTTGGTCTCTTGCTCGACGCGAGCGGCTTCCGCGGCG
GCCGCCTTAGTCACTGCCTCGCGATTCTTCTGCCGCAGAACCGCGAGGTT
CTTTGCCACGGTGGCAGCTTCTTCTTCAAACGCAGCATCTTCCAGCTGCC
ACTGGTCGAGGCGCACCTGCTGAACGAGGGCGTCCGCCTGCGCGAGGGCC
GCAACTCTGCCCGCAGACGAGCACATGGACCGCCGGTGTGCGAGGGGGAT
GGTGCCCCAAAAGACTGCCATCTCGGAGTGCCACGCAGGGCAGGGGGGGT
CCTGAACGGACATGGGAAGCGGTGCAGCGGGCTTCACCGCACCCGCTGGC
TGATTGCTGCCAGCGGCCGCACGAAGATGCGGCGAAGAAAGAGCGTTGTA
AACAGAATCGTTGGCACGCTTTGGAGTGTTGTCGGCGGTCGAAACTGCAG
TAGCCACGGTGGGGGCGGTCGTTGAAGCAGCAGTTATCGAAGCAGACGAA
GCAGCCGAATCCACCACAGCCGAGGCAGTCGAACCCACTGCAGCAGAAGC
AGCTGAAGCAGTCGAAGAAGACTTGCCGGCCAGGCCCA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2606045..2607232-

>mRNA_C-linearis_contig10.576.1 ID=mRNA_C-linearis_contig10.576.1|Name=mRNA_C-linearis_contig10.576.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at C-linearis_contig10:2606045..2607232- (Chordaria linearis ClinC8C monoicous)
CCATCCGCCGTCCAAGAGAAGCTCTGCTTCGCGTTGTCGTGCGCCTTGCG
GAGGGCGTCCGCGAGACGCACGATCTGCACCTCGACAGCCGGCCCATCCG
CCGTCCAAGAGAAGCTCTGCTTCGCGTTGTCGTGCGCCTTGCGGAGGGCG
TCCGCGAGACGCACGATCTGCACCTCGACAGCCGGCCCACGGTGGGGGCG
GTCGTTGAAGCAGCAGTTATCGAAGCAGACGAAGCAGCCGAATCCACCAC
AGCCGAGGCAGTCGAACCCACTGCAGCAGAAGCAGCTGAAGCAGTCGAAG
AAGACTTGCCGGCCAGGCCCACCACGGTGGGGGCGGTCGTTGAAGCAGCA
GTTATCGAAGCAGACGAAGCAGCCGAATCCACCACAGCCGAGGCAGTCGA
ACCCACTGCAGCAGAAGCAGCTGAAGCAGTCGAAGAAGACTTGCCGGCCA
GGCCCA
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