mRNA_C-linearis_contig10.569.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.569.1
Unique NamemRNA_C-linearis_contig10.569.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI)

HSP 1 Score: 427 bits (1097), Expect = 1.130e-145
Identity = 207/271 (76.38%), Postives = 227/271 (83.76%), Query Frame = 3
Query:  519 VIRKVGATYRCG-GETTPIKSWSMRYTKSRRRPQARPPTHRTHKKLTPAEXXXXXXXXXXXXXKEADYNPEPWKNNGVWDIQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW 1328
            +IR VG TY+ G G++T IKSWSMRYTK+RRRPQ  P      K+LTP E             K+ADYNPEPWKNNGVW+ +I SFVVNGE+WH+RERMYG LHHY SGSAHTK HMMGN+LADRILVD RV E LSESTWTTTALHHGLQYGTQGPLTHPRN+RN+W GLGAV TRDSVVAEG NM+SLGADHADKKRW DL+LPF DF+LNARLVLTRVMKK+DIPPDLHEA+FLSCI+HASDHTL HRIQWGKVFN DTT  FKPGTW
Sbjct:    1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQPLPGA----KELTPTEKQAAVAAAK----KQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTRVMKKNDIPPDLHEALFLSCIVHASDHTLIHRIQWGKVFNLDTTNTFKPGTW 263          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 6.820e-65
Identity = 117/195 (60.00%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  519 VIRKVGATYRCG-GETTPIKSWSMRYTKSRRRPQARPPTHR-----------TH---------------------KKLTPAEXXXXXXXXXXXXXKEADYNPEPWKNNGVWDIQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRN 1004
            +IR VG TY+ G G++T IKSWSMRYTK+RRRPQ    + R           +H                     K+LTPAE             K+ADYNPEPWKNNGVW+ +I SFVVNGE+WH+RERMYG LHHY SGSAHTK HMMGN+LADRILVD RV E LSESTWTTTALHHGLQYGTQGPLTHPR+
Sbjct:    1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQMTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAAK----KQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRH 191          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: UPI00160002B3 (uncharacterized protein LOC118410277 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160002B3)

HSP 1 Score: 130 bits (328), Expect = 3.540e-30
Identity = 93/262 (35.50%), Postives = 136/262 (51.91%), Query Frame = 3
Query:  756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLP-FPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQ-----------WGKVFNCDTTARFKPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
            +Q+ +F  NG    NR  ++  ++ Y   S HTKSH+  N+L  R +VD+ V   L ES++T+  LH+ L + +   L    N  +R+ G G V  R+SVV E  NM++L   H   +RW       F   +  +RL L  VM++HDI P L +A+F   I+H+ DH   H I            W K  NC+T         Y  + ++ +R + T+P LNP   N +    KPFY  LY+ LK ID  K+A+ VTAS+MY
Sbjct:  120 VQVLNFTRNGVDVTNRCEIFSTIYFYHIYSMHTKSHLFSNSLV-RHIVDNDVH-TLQESSYTSIPLHYELLHSSLSVLEWGGN-MSRYLGYGGVCIRESVVKESRNMSALEG-HQAVRRWNSHGKDSFAGKLFRSRLALQSVMERHDIAPKLLDALFNHTIVHSVDH---HGISEWSYLRFSLHPWDK--NCNT---------YQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-KMADVVTASVMY 362          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: A0A8K0F0A4_BRALA (Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F0A4_BRALA)

HSP 1 Score: 124 bits (312), Expect = 5.580e-28
Identity = 84/250 (33.60%), Postives = 128/250 (51.20%), Query Frame = 3
Query:  756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
            +QI  F  NG+   +R +M+  ++ Y + S HTKSH+  N+L  R +VD+ V+  L ES++T+  LH+ L + +   L    N  +++ G G    R+S+V E  NM++L    A++         F   +  +RL L  VM +H I P L +A+F   I+H+ DH   H +              K  + Y    ++ +R + T+P LNP   N I    KPFY  LY+ LK IDT   A  VTAS+MY
Sbjct:  119 VQILHFTRNGDDVTDRSQMFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDVK-TLQESSYTSMPLHYVLLHSSLSVLMWDGN-MSQYLGYGDACIRESLVEESRNMSALDGHRAEEHWNSHGKDTFAGKLFRSRLALRDVMGRHGIDPTLLDALFNHTIVHSVDH---HGMSEWSCLRFSLHPWDKECSLYQALNTSVYRVLITQPNLNPLAPNTISSINKPFYQDLYRELKNIDT-SWAEVVTASVMY 361          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: UPI0016012D88 (uncharacterized protein LOC118409006 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016012D88)

HSP 1 Score: 120 bits (300), Expect = 2.320e-26
Identity = 86/259 (33.20%), Postives = 135/259 (52.12%), Query Frame = 3
Query:  756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLG---ADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
            +Q+  F  NG    +R +++  ++ Y   S HTKSH+  N+L  R +VD+ V+ AL ES++T+  LH+ L + +   L    N  +R+   G    R+SVV E  NM+++    A H+ K    D    F   +L +RL L  V+++H I P L + +F   I+H+ DH  +   +W +V       RF    W      Y  + ++ +R + T+P LNP   N +    KPFY  LY+ LK ID  ++A  VTAS+MY
Sbjct:  116 VQVLRFTRNGVEVSDRSQIFSTIYFYHIHSMHTKSHLFSNSLV-RHIVDNDVK-ALQESSYTSIPLHYVLLHSSLSVLEWDGN-MSRYFRYGGACIRESVVEESRNMSAMEGHQAVHSWKSHGKD---SFAGKLLRSRLALQVVVERHGIAPKLLDPLFNHTIVHSVDHHGSS--EWSRV-------RFSLHPWDKDCSTYQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-QMAGVVTASVMY 358          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: C3Z144_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z144_BRAFL)

HSP 1 Score: 114 bits (284), Expect = 3.660e-24
Identity = 84/260 (32.31%), Postives = 125/260 (48.08%), Query Frame = 3
Query:  756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFML----NARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
            ++I  F  NGE   +  +++ F   Y + S+H K H+  N+L  R +VD R  + L EST+T+  LH+GL +    PL    N  + +  +G V TR+SV+ E  NM S    H   +RW   DL   + +L     +R  L  VMK+H +   L E +F   ++H+ DH   ++          +  RF    W      Y  + +  +R M   P LNP   N +    KPFY  LY+ LK ID   +A   TAS+MY
Sbjct:  120 VKILHFTRNGEEISDMSQIFSFWFFYGTLSSHAKCHLFSNSLV-RHIVD-RDLKTLQESTYTSIPLHYGLLHSPISPLQSDGNVSS-FLAVGVVGTRESVMKESKNM-SAWEGHQSGRRW---DLLGQESLLYKLFRSRRALQGVMKRHGVDQKLLEPLFNHIVVHSMDHHGAYK---------SSHLRFSLHPWDTGCTTYQAFNTNMFRVMLVRPNLNPPAPNTLRSINKPFYQDLYRELKNIDP-DVAEMATASVMY 362          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: C3Z6P0_BRAFL (DUF3504 domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z6P0_BRAFL)

HSP 1 Score: 116 bits (291), Expect = 7.110e-24
Identity = 84/258 (32.56%), Postives = 136/258 (52.71%), Query Frame = 3
Query:  756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLG---ADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIM 1502
            +Q+  F  NG    +R +++  ++ Y   S HTKSH+  N+L  R +VD+ V+ AL ES++T+  LH+ L + +   L    N  +R+ G G    R+SVV E  NM+++    A H+ K    D    F   +L +RL L  V+++H I P L + +F   I+H+ DH  +   +W ++       RF    W      Y  + ++ +R + T+P LNP   N +    KPFY  LY+ LK ID  ++A+ VTAS++
Sbjct:  116 VQVLRFTRNGVEVSDRSQIFSTIYLYHIHSMHTKSHLFSNSLV-RHIVDNDVK-ALQESSYTSIPLHYVLLHSSLSVLEWGGN-MSRYLGYGDACIRESVVEESRNMSAMEGHQAVHSWKSHGKD---SFAGKLLRSRLALQVVVERHGIAPKLLDPLFNHTIVHSVDHHGSS--EWSRL-------RFSLHPWDKDCSTYQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-QMADVVTASVI 357          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: A0A8J9ZEA8_BRALA (Hypp1061 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZEA8_BRALA)

HSP 1 Score: 113 bits (282), Expect = 8.060e-24
Identity = 79/254 (31.10%), Postives = 128/254 (50.39%), Query Frame = 3
Query:  762 ITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
            I  F  NG    +R +++  ++ Y + S HTKSH+  N+L  R +VD+ ++  L ES++T+ ALH+ L + +        N  +++ G G    R+S+V E  NM+ L       +        F   +  +RL L   MK+H+I P L +A+F   I+H+ DH      +W  +       RF    W      Y  + ++ +R +  +P +NP   N I   +KPFY  LY+ LK+ID+   A+ VTAS+MY
Sbjct:  133 ILYFTRNGVEVDDRSQIFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDIK-TLKESSYTSIALHNELLHSSLSVFQFEGNV-SKYLGYGVAGIRESLVEESRNMSVLEGHQVMHRSNPHEKDSFVGKLYRSRLALQGAMKRHEIDPKLLDALFNHTIVHSVDHVSNS--EWSFL-------RFSLHPWAEDCNIYQAFNTSMFRILIVQPNVNPLAPNTIRSIKKPFYQDLYRDLKKIDSHW-ADVVTASVMY 373          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: UPI0015FFF7C7 (uncharacterized protein LOC118408656 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFF7C7)

HSP 1 Score: 108 bits (269), Expect = 1.160e-21
Identity = 77/247 (31.17%), Postives = 120/247 (48.58%), Query Frame = 3
Query:  756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLP-FPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHT----------LTHRIQWGKVFNCDTTARFKPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEID 1463
            + I  F+ NG    +R +++  ++ Y   S HTKSH+  N+L  R +V++ V+  L ES++T+  LH+ L + +   L    N  +R+ G G    R+S+V E  NM++L   H    RW       F   +  +RL L  VM++H I P + +A+F   I+H+ DH             H   W K  +C T   F          ++ +R + T+P LNP   N +    KPFY  LY+ LK ID
Sbjct:  194 VHILRFIRNGVEVTDRSQIFSTIYFYHIHSMHTKSHLFSNSLV-RNIVNNDVK-TLQESSYTSIPLHYQLLHSSLSVLEWDGN-MSRYLGYGDACIRESIVEESRNMSALEG-HQAVHRWNSHGKDSFAGKLFRSRLALQDVMERHGIDPKMLDALFNHTIVHSVDHHGISERSFLRFSLHPCTWDK--DCSTYRAFN---------TSVFRVLITQPNLNPLAPNTLRFINKPFYQDLYRELKNID 425          
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: D7G8N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.710e-21
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 3
Query: 1362 MWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
            MW+EPTLNPFWNNKICRSR PFY QLYKGL+EIDTFK++ N+TASIMY
Sbjct:    1 MWSEPTLNPFWNNKICRSRNPFYRQLYKGLQEIDTFKVSKNITASIMY 48          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G8N6_ECTSI1.130e-14576.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LBR7_9PHAE6.820e-6560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00160002B33.540e-3035.50uncharacterized protein LOC118410277 n=1 Tax=Branc... [more]
A0A8K0F0A4_BRALA5.580e-2833.60Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum... [more]
UPI0016012D882.320e-2633.20uncharacterized protein LOC118409006 n=1 Tax=Branc... [more]
C3Z144_BRAFL3.660e-2432.31Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
C3Z6P0_BRAFL7.110e-2432.56DUF3504 domain-containing protein n=1 Tax=Branchio... [more]
A0A8J9ZEA8_BRALA8.060e-2431.10Hypp1061 protein n=2 Tax=Branchiostoma lanceolatum... [more]
UPI0015FFF7C71.160e-2131.17uncharacterized protein LOC118408656 n=1 Tax=Branc... [more]
D7G8N7_ECTSI1.710e-2183.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2464294..2468232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score118.2
Seed ortholog evalue6.6e-24
Seed eggNOG ortholog7739.XP_002595788.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3504)
EggNOG OGs2CY9D@1,2S2XV@2759,3A4FC@33154,3BRU0@33208,3D9Y7@33213,48K37@7711
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002410.1
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons8
Model size1508
Cds size924
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927341.953457-UTR-C-linearis_contig10:2464293..24644961622927341.953457-UTR-C-linearis_contig10:2464293..2464496Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2464294..2464496 +
1690879638.7949069-UTR-C-linearis_contig10:2464293..24644961690879638.7949069-UTR-C-linearis_contig10:2464293..2464496Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2464294..2464496 +
1622927341.969115-UTR-C-linearis_contig10:2464770..24649771622927341.969115-UTR-C-linearis_contig10:2464770..2464977Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2464771..2464977 +
1690879638.8097923-UTR-C-linearis_contig10:2464770..24649771690879638.8097923-UTR-C-linearis_contig10:2464770..2464977Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2464771..2464977 +
1622927341.97881-UTR-C-linearis_contig10:2465226..24654001622927341.97881-UTR-C-linearis_contig10:2465226..2465400Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2465227..2465400 +
1690879638.8180635-UTR-C-linearis_contig10:2465226..24654001690879638.8180635-UTR-C-linearis_contig10:2465226..2465400Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2465227..2465400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927341.9919457-CDS-C-linearis_contig10:2465400..24654591622927341.9919457-CDS-C-linearis_contig10:2465400..2465459Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2465401..2465459 +
1690879638.8262498-CDS-C-linearis_contig10:2465400..24654591690879638.8262498-CDS-C-linearis_contig10:2465400..2465459Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2465401..2465459 +
1622927342.0023224-CDS-C-linearis_contig10:2465982..24663391622927342.0023224-CDS-C-linearis_contig10:2465982..2466339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2465983..2466339 +
1690879638.8346987-CDS-C-linearis_contig10:2465982..24663391690879638.8346987-CDS-C-linearis_contig10:2465982..2466339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2465983..2466339 +
1622927342.012568-CDS-C-linearis_contig10:2466577..24667511622927342.012568-CDS-C-linearis_contig10:2466577..2466751Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2466578..2466751 +
1690879638.8431473-CDS-C-linearis_contig10:2466577..24667511690879638.8431473-CDS-C-linearis_contig10:2466577..2466751Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2466578..2466751 +
1622927342.0236268-CDS-C-linearis_contig10:2467110..24672631622927342.0236268-CDS-C-linearis_contig10:2467110..2467263Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2467111..2467263 +
1690879638.8520753-CDS-C-linearis_contig10:2467110..24672631690879638.8520753-CDS-C-linearis_contig10:2467110..2467263Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2467111..2467263 +
1622927342.034182-CDS-C-linearis_contig10:2467721..24678021622927342.034182-CDS-C-linearis_contig10:2467721..2467802Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2467722..2467802 +
1690879638.8622687-CDS-C-linearis_contig10:2467721..24678021690879638.8622687-CDS-C-linearis_contig10:2467721..2467802Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2467722..2467802 +
1622927342.0443518-CDS-C-linearis_contig10:2468132..24682321622927342.0443518-CDS-C-linearis_contig10:2468132..2468232Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2468133..2468232 +
1690879638.8721364-CDS-C-linearis_contig10:2468132..24682321690879638.8721364-CDS-C-linearis_contig10:2468132..2468232Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2468133..2468232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.569.1prot_C-linearis_contig10.569.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2465401..2468232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.569.1

>prot_C-linearis_contig10.569.1 ID=prot_C-linearis_contig10.569.1|Name=mRNA_C-linearis_contig10.569.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=308bp
MRYTKSRRRPQARPPTHRTHKKLTPAEEKAAAAAAAAAAKKEADYNPEPW
KNNGVWDIQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALA
DRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGA
VFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMK
KHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTWYD
HWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANN
VTASIMY*
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mRNA from alignment at C-linearis_contig10:2464294..2468232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.569.1 ID=mRNA_C-linearis_contig10.569.1|Name=mRNA_C-linearis_contig10.569.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3939bp|location=Sequence derived from alignment at C-linearis_contig10:2464294..2468232+ (Chordaria linearis ClinC8C monoicous)
ATGTGCGAAGACACGGAGAAAAAAGTGGAGTCTTCCGCGGATCCCCCGCG GGGACCGACCAAGAAGAAAGAGTCCAACCGCCGCCGCTCTCTGTCTCCTG CGCCCCATCCGGGCGCCACGCCCATCAAGACCGGTCTGTGGCTCGAGCCC CACCACCTGCACGGCAAGCTCTACAGGGCTCACCACACCATCCAGATCCC AATGTAAGACGGCACTTAGAATAGTTGAAGGATGAGGATCATTCTTTGTG TTGTTCATTCAAAGAGTGTTGTGCTGTGACAACCCATTTTTTCTTTGGGT TCTGAGGCGCCTGCATGGAACCATATGGATGTCTTCACAGATGACGACAA ATCAATAAAGAACAACATGTGCACGCTTGCCTGAATGTACAAAAAAATGT GTGGTCAACGGCACGAGAAAATCAATGCAAAACACTGCTGTGGCTGTGGC CGTTGCGTGCTTGCTTTTCTTGCGCAGGTACCTGGTGAAGTTTGTCTTGA GTCAAATCCTGTGCCTCATTTCCTTCTTCTTCTGGCGCTTGCCCACCGAC AACGACATTGCCGAGATTATGGAGGGATCGGGCATGTGCATCGTCCTCCG CCGTGACCACGAAGCCGAGGCAGCCGAAAAGGCAAGAATGGATGGAATAA ACTATTTTTGAGGAAGCCCACACGTCAACGTTGTGTGAGGGTAGTGGCGC TGTACGGAACGGGTTGGCTTCAGCAACGGACAAATTGCACTCGATGTTCA TATTTACGAATAGTAACTGCTCGAGCGCATGCAATGCTCCTTGCTGCTGT CGCTACGCCCACCCACCCCCGCCCTACTCGGATAGAATGTAACTTGTTGT CTTCTGCGACACCTATTTATATTACTTCACGACCTTGAAAATGTCTTCAC CCCTGCCGACGCTATGTCAATTACCATCGCCAGGCTGCATTCACCTCCCT CCCCGGCTGCACGGCGGCCCCCGAAGATGCCACCTCTCTCGTGGAGACCC GTCACTACTATGTAAACGTTGAGAAGTGCCTGTTGGAGCTTGTGATTCGC AAGGTCGGCGCTACGTACCGCTGCGGCGGTGAGACCACTCCCATCAAGAG CTGGAGCATGCGCTACACCAAGAGCCGCAGGCGCCCGCAGGCAAGACCCC CAACGCACCGCACACAGTCTTTTTCATTTATTAGGTGGTAGCAGCGTGTC ACAAACTGTTCCACCGAAGGTCCACTAAGACCACCACCGGGAGGGAGAAA AACACGTCGAACGCTTAATAATCTGTTGTTCGCGGCCGCCATCAAGTCCT GTACTCGGTAGGCGGTATGTGTGGTTGTTCGGGGTGCATGTTAAAAAAAA CACCCCTTGCTTGGGTCCGTAATTCTCTCATCCTTCGCCTTTCGGTCTCG TCGCATACTTTTCGCCCGAACGGAGGAAGGAGGTGGGGAGCGTCATGCAC GGCATCCCTGGGCTGGCCTTGATAGAAAATCTCGGAAACCCGAATTCGCT TGTCTCCACGCTAACATTCTAAACGCAAAACGTTCTCGTTTCGAAAAGTT CGCCTGCTGCTACACCTCATCAGCATCGCGCCTTTACCTCTCACGCGCAC AACCGTGTACGCCCTCTTGGTTCTACGACGAACACATTTTTGTTGTCTAT CGATATCTAGCCCAAGAAGCAAGAACCCCTTCCCGGAAGTAAGAAGCTCA CCCCGGCCGAGGAGAAGGCCGCCGCCGCTGCCGCCGCGGCCGCCGCCAAG AAAGAGGCCGACTACAACCCCGAGCCGTGGAAGAACAACGGCGTGTGGGA CATCCAGATCACCTCCTTCGTGGTGAACGGCGAGTCCTGGCACAACAGGG AGCGCATGTACGGCTTCCTGCACCACTACGCGTCGGGAAGCGCCCACACC AAGAGCCACATGATGGGGAACGCGCTCGCCGACCGCATCCTCGTGGACAG CCGCGTCGAGGAGGCGCTGTCCGAGTCGACGTGGACCACCACGGCCCTGC ACCACGGGCTCCAGTACGGCACCCAGGGGCCCTTGACCCACCCCAGGTAC TGCCCCAGCTCTGAATGTGCCTGCACCTGTTGAACAATATCGAATCTGTT TTCAACTTCAAGTGACGGGCACGCCAGGTCCGGTATTGGCCGGACACTCC GTACCCACCCGTGTTGGCACGAGTAGGGGGATGCACGATGGGCGTGATCA CTGTACTGTAGGGGGGCACGAAAATTCTTTGTTTAAAACCTTGCTCGATT GGTGTGGTTCCCGTTCACTTGCATGTTTGATCAGGAACGACCGCAACAGA TGGGCCGGGCTCGGCGCCGTCTTCACCCGCGATTCCGTGGTGGCCGAGGG GGCCAACATGACCAGCCTCGGAGCCGATCACGCAGACAAGAAGCGTTGGG TCGACCTCGACCTCCCCTTCCCTGACTTCATGCTCAACGCTCGCCTCGTG CTGACCCGGTGAGGCTTTGCGCGCATTTGTTTTGTGTCTGGGAGCAAGAG AGAAGAGAAGGGGAGCGTGAATGAGAGGCACGGTAGATGTGATATATGAC TCAGAAGAATCAGTAGAACCAGGGCGATGCTCAAGAGATCGTTCGCTTGT TCCTCCGACGATAACCAGCGGTTCGCTCACCTCCCTGCACGAAAACAGGG CCGGCAGCAGTTCGCCTATCCATGTGAATGCGAACGACGACAGCTAGTAT TCAAGGTGTTGAAGAAAGTGTTGAAAACAAACGCTCTAAAACACCCAACA TCATTGTCCATCACCGTCAACTGAATCGTGCTCGTTCTTGGGTGCTTTGA TCCCCCCCCGCCGACAGCGTGATGAAGAAACACGACATCCCTCCCGACCT GCACGAGGCCATCTTTCTGTCTTGCATCATCCACGCCAGCGACCACACTC TCACCCACCGGATCCAGTGGGGCAAGGTCTTCAACTGCGACACCACCGCC AGGTTCAAGCCGGGCACATGGTGAGAAGACAGCGAGGGAGAAACCGCTGT TGCTCTACTTTGTGCCGATTGCCTGGTACTGAGTGTGAGGAAGAGAAAAC ATGCATTTCAATGCTGATGTGTTTCGGACGCGCTTCGTTTATTTCTCTCT CTATTTCTCAGCCATCTGTCGTGTCGTGATGGTAGCATGCGAAACAAGCT TGCCGCGGCGTTCAACGTTGCGTTCTCGCCCCGAAGTAGTGATTGCTTGC AGATGTTGTATTTTCTCGACCTGTATATGACGCGAAACGACTTGATTTTC GTTAGCATTTAGATGTCCATTCCACACTTGCTCAATAAATGATGCTCATA CTTCGGAACATAGTACGATGATCGTGTTGTATGTTCGGGGACTATTTCGG TTGCACTTTCTTTCTCGGGTTCTTCGCGTTGATGCTGGCTCGGGTGTTGT TTTTGGTCGCTGCTACTCGCGTGCTCAGGTACGACCACTGGGAGAGCACC GCTTGGCGCTACATGTGGACTGAGCCTACGCTCAACCCTTTCTGGAACAA CAAGATCTGGTGAGACATCGACGCACCAGTTGTGGCCTGGAGCTCGCTTG ATCTTGGGCGTGCAAACATTCGTTTTGCAGTCTCTCTTTCGCATCAGCTT GTATTTGAACGACGGAGACGTCGTGTGTGTGTGTGTGTGTGTGCTTTTTG TGTTTGTGGGAACAAGCAGTATCCTACTTGTGCCCCTCCTTTGTTCAGGC GGATATATAAACCTGAAATAGACGTGCAGTTCCCGAACTTAAGAGCCCAA TGTGTTCCTCGATACGAATCAACACACGGCTAATATCACCTGTGCATGCC GGTTGGTATGGATGATCGTGATCCTCGCCGCTTCTTCAGCCGGAGCAGGA AGCCGTTCTACAACCAGCTGTACAAGGGACTGAAAGAGATCGACACCTTC AAAATCGCCAACAACGTCACCGCAAGCATCATGTACTAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2464294..2468232+

>mRNA_C-linearis_contig10.569.1 ID=mRNA_C-linearis_contig10.569.1|Name=mRNA_C-linearis_contig10.569.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at C-linearis_contig10:2464294..2468232+ (Chordaria linearis ClinC8C monoicous)
ATGCGCTACACCAAGAGCCGCAGGCGCCCGCAGGCAAGACCCCCAACGCA
CCGCACACAATGCGCTACACCAAGAGCCGCAGGCGCCCGCAGGCAAGACC
CCCAACGCACCGCACACATAAGAAGCTCACCCCGGCCGAGGAGAAGGCCG
CCGCCGCTGCCGCCGCGGCCGCCGCCAAGAAAGAGGCCGACTACAACCCC
GAGCCGTGGAAGAACAACGGCGTGTGGGACATCCAGATCACCTCCTTCGT
GGTGAACGGCGAGTCCTGGCACAACAGGGAGCGCATGTACGGCTTCCTGC
ACCACTACGCGTCGGGAAGCGCCCACACCAAGAGCCACATGATGGGGAAC
GCGCTCGCCGACCGCATCCTCGTGGACAGCCGCGTCGAGGAGGCGCTGTC
CGAGTCGACGTGGACCACCACGGCCCTGCACCACGGGCTCCAGTACGGCA
CCCAGGGGCCCTTGACCCACCCCAGTAAGAAGCTCACCCCGGCCGAGGAG
AAGGCCGCCGCCGCTGCCGCCGCGGCCGCCGCCAAGAAAGAGGCCGACTA
CAACCCCGAGCCGTGGAAGAACAACGGCGTGTGGGACATCCAGATCACCT
CCTTCGTGGTGAACGGCGAGTCCTGGCACAACAGGGAGCGCATGTACGGC
TTCCTGCACCACTACGCGTCGGGAAGCGCCCACACCAAGAGCCACATGAT
GGGGAACGCGCTCGCCGACCGCATCCTCGTGGACAGCCGCGTCGAGGAGG
CGCTGTCCGAGTCGACGTGGACCACCACGGCCCTGCACCACGGGCTCCAG
TACGGCACCCAGGGGCCCTTGACCCACCCCAGGAACGACCGCAACAGATG
GGCCGGGCTCGGCGCCGTCTTCACCCGCGATTCCGTGGTGGCCGAGGGGG
CCAACATGACCAGCCTCGGAGCCGATCACGCAGACAAGAAGCGTTGGGTC
GACCTCGACCTCCCCTTCCCTGACTTCATGCTCAACGCTCGCCTCGTGCT
GACCCGGAACGACCGCAACAGATGGGCCGGGCTCGGCGCCGTCTTCACCC
GCGATTCCGTGGTGGCCGAGGGGGCCAACATGACCAGCCTCGGAGCCGAT
CACGCAGACAAGAAGCGTTGGGTCGACCTCGACCTCCCCTTCCCTGACTT
CATGCTCAACGCTCGCCTCGTGCTGACCCGCGTGATGAAGAAACACGACA
TCCCTCCCGACCTGCACGAGGCCATCTTTCTGTCTTGCATCATCCACGCC
AGCGACCACACTCTCACCCACCGGATCCAGTGGGGCAAGGTCTTCAACTG
CGACACCACCGCCAGGTTCAAGCCGGGCACATGCGTGATGAAGAAACACG
ACATCCCTCCCGACCTGCACGAGGCCATCTTTCTGTCTTGCATCATCCAC
GCCAGCGACCACACTCTCACCCACCGGATCCAGTGGGGCAAGGTCTTCAA
CTGCGACACCACCGCCAGGTTCAAGCCGGGCACATGGTACGACCACTGGG
AGAGCACCGCTTGGCGCTACATGTGGACTGAGCCTACGCTCAACCCTTTC
TGGAACAACAAGATCTGGTACGACCACTGGGAGAGCACCGCTTGGCGCTA
CATGTGGACTGAGCCTACGCTCAACCCTTTCTGGAACAACAAGATCTGCC
GGAGCAGGAAGCCGTTCTACAACCAGCTGTACAAGGGACTGAAAGAGATC
GACACCTTCAAAATCGCCAACAACGTCACCGCAAGCATCATGTACTAGCC
GGAGCAGGAAGCCGTTCTACAACCAGCTGTACAAGGGACTGAAAGAGATC
GACACCTTCAAAATCGCCAACAACGTCACCGCAAGCATCATGTACTAG
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