mRNA_C-linearis_contig10.569.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI) HSP 1 Score: 427 bits (1097), Expect = 1.130e-145 Identity = 207/271 (76.38%), Postives = 227/271 (83.76%), Query Frame = 3
Query: 519 VIRKVGATYRCG-GETTPIKSWSMRYTKSRRRPQARPPTHRTHKKLTPAEXXXXXXXXXXXXXKEADYNPEPWKNNGVWDIQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW 1328
+IR VG TY+ G G++T IKSWSMRYTK+RRRPQ P K+LTP E K+ADYNPEPWKNNGVW+ +I SFVVNGE+WH+RERMYG LHHY SGSAHTK HMMGN+LADRILVD RV E LSESTWTTTALHHGLQYGTQGPLTHPRN+RN+W GLGAV TRDSVVAEG NM+SLGADHADKKRW DL+LPF DF+LNARLVLTRVMKK+DIPPDLHEA+FLSCI+HASDHTL HRIQWGKVFN DTT FKPGTW
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQPLPGA----KELTPTEKQAAVAAAK----KQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTRVMKKNDIPPDLHEALFLSCIVHASDHTLIHRIQWGKVFNLDTTNTFKPGTW 263
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE) HSP 1 Score: 218 bits (554), Expect = 6.820e-65 Identity = 117/195 (60.00%), Postives = 132/195 (67.69%), Query Frame = 3
Query: 519 VIRKVGATYRCG-GETTPIKSWSMRYTKSRRRPQARPPTHR-----------TH---------------------KKLTPAEXXXXXXXXXXXXXKEADYNPEPWKNNGVWDIQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRN 1004
+IR VG TY+ G G++T IKSWSMRYTK+RRRPQ + R +H K+LTPAE K+ADYNPEPWKNNGVW+ +I SFVVNGE+WH+RERMYG LHHY SGSAHTK HMMGN+LADRILVD RV E LSESTWTTTALHHGLQYGTQGPLTHPR+
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQMTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAAK----KQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRH 191
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: UPI00160002B3 (uncharacterized protein LOC118410277 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160002B3) HSP 1 Score: 130 bits (328), Expect = 3.540e-30 Identity = 93/262 (35.50%), Postives = 136/262 (51.91%), Query Frame = 3
Query: 756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLP-FPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQ-----------WGKVFNCDTTARFKPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
+Q+ +F NG NR ++ ++ Y S HTKSH+ N+L R +VD+ V L ES++T+ LH+ L + + L N +R+ G G V R+SVV E NM++L H +RW F + +RL L VM++HDI P L +A+F I+H+ DH H I W K NC+T Y + ++ +R + T+P LNP N + KPFY LY+ LK ID K+A+ VTAS+MY
Sbjct: 120 VQVLNFTRNGVDVTNRCEIFSTIYFYHIYSMHTKSHLFSNSLV-RHIVDNDVH-TLQESSYTSIPLHYELLHSSLSVLEWGGN-MSRYLGYGGVCIRESVVKESRNMSALEG-HQAVRRWNSHGKDSFAGKLFRSRLALQSVMERHDIAPKLLDALFNHTIVHSVDH---HGISEWSYLRFSLHPWDK--NCNT---------YQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-KMADVVTASVMY 362
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: A0A8K0F0A4_BRALA (Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F0A4_BRALA) HSP 1 Score: 124 bits (312), Expect = 5.580e-28 Identity = 84/250 (33.60%), Postives = 128/250 (51.20%), Query Frame = 3
Query: 756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
+QI F NG+ +R +M+ ++ Y + S HTKSH+ N+L R +VD+ V+ L ES++T+ LH+ L + + L N +++ G G R+S+V E NM++L A++ F + +RL L VM +H I P L +A+F I+H+ DH H + K + Y ++ +R + T+P LNP N I KPFY LY+ LK IDT A VTAS+MY
Sbjct: 119 VQILHFTRNGDDVTDRSQMFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDVK-TLQESSYTSMPLHYVLLHSSLSVLMWDGN-MSQYLGYGDACIRESLVEESRNMSALDGHRAEEHWNSHGKDTFAGKLFRSRLALRDVMGRHGIDPTLLDALFNHTIVHSVDH---HGMSEWSCLRFSLHPWDKECSLYQALNTSVYRVLITQPNLNPLAPNTISSINKPFYQDLYRELKNIDT-SWAEVVTASVMY 361
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: UPI0016012D88 (uncharacterized protein LOC118409006 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016012D88) HSP 1 Score: 120 bits (300), Expect = 2.320e-26 Identity = 86/259 (33.20%), Postives = 135/259 (52.12%), Query Frame = 3
Query: 756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLG---ADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
+Q+ F NG +R +++ ++ Y S HTKSH+ N+L R +VD+ V+ AL ES++T+ LH+ L + + L N +R+ G R+SVV E NM+++ A H+ K D F +L +RL L V+++H I P L + +F I+H+ DH + +W +V RF W Y + ++ +R + T+P LNP N + KPFY LY+ LK ID ++A VTAS+MY
Sbjct: 116 VQVLRFTRNGVEVSDRSQIFSTIYFYHIHSMHTKSHLFSNSLV-RHIVDNDVK-ALQESSYTSIPLHYVLLHSSLSVLEWDGN-MSRYFRYGGACIRESVVEESRNMSAMEGHQAVHSWKSHGKD---SFAGKLLRSRLALQVVVERHGIAPKLLDPLFNHTIVHSVDHHGSS--EWSRV-------RFSLHPWDKDCSTYQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-QMAGVVTASVMY 358
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: C3Z144_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z144_BRAFL) HSP 1 Score: 114 bits (284), Expect = 3.660e-24 Identity = 84/260 (32.31%), Postives = 125/260 (48.08%), Query Frame = 3
Query: 756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFML----NARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
++I F NGE + +++ F Y + S+H K H+ N+L R +VD R + L EST+T+ LH+GL + PL N + + +G V TR+SV+ E NM S H +RW DL + +L +R L VMK+H + L E +F ++H+ DH ++ + RF W Y + + +R M P LNP N + KPFY LY+ LK ID +A TAS+MY
Sbjct: 120 VKILHFTRNGEEISDMSQIFSFWFFYGTLSSHAKCHLFSNSLV-RHIVD-RDLKTLQESTYTSIPLHYGLLHSPISPLQSDGNVSS-FLAVGVVGTRESVMKESKNM-SAWEGHQSGRRW---DLLGQESLLYKLFRSRRALQGVMKRHGVDQKLLEPLFNHIVVHSMDHHGAYK---------SSHLRFSLHPWDTGCTTYQAFNTNMFRVMLVRPNLNPPAPNTLRSINKPFYQDLYRELKNIDP-DVAEMATASVMY 362
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: C3Z6P0_BRAFL (DUF3504 domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z6P0_BRAFL) HSP 1 Score: 116 bits (291), Expect = 7.110e-24 Identity = 84/258 (32.56%), Postives = 136/258 (52.71%), Query Frame = 3
Query: 756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLG---ADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIM 1502
+Q+ F NG +R +++ ++ Y S HTKSH+ N+L R +VD+ V+ AL ES++T+ LH+ L + + L N +R+ G G R+SVV E NM+++ A H+ K D F +L +RL L V+++H I P L + +F I+H+ DH + +W ++ RF W Y + ++ +R + T+P LNP N + KPFY LY+ LK ID ++A+ VTAS++
Sbjct: 116 VQVLRFTRNGVEVSDRSQIFSTIYLYHIHSMHTKSHLFSNSLV-RHIVDNDVK-ALQESSYTSIPLHYVLLHSSLSVLEWGGN-MSRYLGYGDACIRESVVEESRNMSAMEGHQAVHSWKSHGKD---SFAGKLLRSRLALQVVVERHGIAPKLLDPLFNHTIVHSVDHHGSS--EWSRL-------RFSLHPWDKDCSTYQAFNTSVFRVLITQPNLNPLAPNTLRSINKPFYQDLYRELKNIDP-QMADVVTASVI 357
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: A0A8J9ZEA8_BRALA (Hypp1061 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZEA8_BRALA) HSP 1 Score: 113 bits (282), Expect = 8.060e-24 Identity = 79/254 (31.10%), Postives = 128/254 (50.39%), Query Frame = 3
Query: 762 ITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLPFPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHTLTHRIQWGKVFNCDTTARFKPGTW------YDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
I F NG +R +++ ++ Y + S HTKSH+ N+L R +VD+ ++ L ES++T+ ALH+ L + + N +++ G G R+S+V E NM+ L + F + +RL L MK+H+I P L +A+F I+H+ DH +W + RF W Y + ++ +R + +P +NP N I +KPFY LY+ LK+ID+ A+ VTAS+MY
Sbjct: 133 ILYFTRNGVEVDDRSQIFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDIK-TLKESSYTSIALHNELLHSSLSVFQFEGNV-SKYLGYGVAGIRESLVEESRNMSVLEGHQVMHRSNPHEKDSFVGKLYRSRLALQGAMKRHEIDPKLLDALFNHTIVHSVDHVSNS--EWSFL-------RFSLHPWAEDCNIYQAFNTSMFRILIVQPNVNPLAPNTIRSIKKPFYQDLYRDLKKIDSHW-ADVVTASVMY 373
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: UPI0015FFF7C7 (uncharacterized protein LOC118408656 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFF7C7) HSP 1 Score: 108 bits (269), Expect = 1.160e-21 Identity = 77/247 (31.17%), Postives = 120/247 (48.58%), Query Frame = 3
Query: 756 IQITSFVVNGESWHNRERMYGFLHHYASGSAHTKSHMMGNALADRILVDSRVEEALSESTWTTTALHHGLQYGTQGPLTHPRNDRNRWAGLGAVFTRDSVVAEGANMTSLGADHADKKRWVDLDLP-FPDFMLNARLVLTRVMKKHDIPPDLHEAIFLSCIIHASDHT----------LTHRIQWGKVFNCDTTARFKPGTWYDHWESTAWRYMWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEID 1463
+ I F+ NG +R +++ ++ Y S HTKSH+ N+L R +V++ V+ L ES++T+ LH+ L + + L N +R+ G G R+S+V E NM++L H RW F + +RL L VM++H I P + +A+F I+H+ DH H W K +C T F ++ +R + T+P LNP N + KPFY LY+ LK ID
Sbjct: 194 VHILRFIRNGVEVTDRSQIFSTIYFYHIHSMHTKSHLFSNSLV-RNIVNNDVK-TLQESSYTSIPLHYQLLHSSLSVLEWDGN-MSRYLGYGDACIRESIVEESRNMSALEG-HQAVHRWNSHGKDSFAGKLFRSRLALQDVMERHGIDPKMLDALFNHTIVHSVDHHGISERSFLRFSLHPCTWDK--DCSTYRAFN---------TSVFRVLITQPNLNPLAPNTLRFINKPFYQDLYRELKNID 425
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Match: D7G8N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.710e-21 Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 3
Query: 1362 MWTEPTLNPFWNNKICRSRKPFYNQLYKGLKEIDTFKIANNVTASIMY 1505
MW+EPTLNPFWNNKICRSR PFY QLYKGL+EIDTFK++ N+TASIMY
Sbjct: 1 MWSEPTLNPFWNNKICRSRNPFYRQLYKGLQEIDTFKVSKNITASIMY 48 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.569.1 >prot_C-linearis_contig10.569.1 ID=prot_C-linearis_contig10.569.1|Name=mRNA_C-linearis_contig10.569.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=308bp MRYTKSRRRPQARPPTHRTHKKLTPAEEKAAAAAAAAAAKKEADYNPEPWback to top mRNA from alignment at C-linearis_contig10:2464294..2468232+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.569.1 ID=mRNA_C-linearis_contig10.569.1|Name=mRNA_C-linearis_contig10.569.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3939bp|location=Sequence derived from alignment at C-linearis_contig10:2464294..2468232+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2464294..2468232+ >mRNA_C-linearis_contig10.569.1 ID=mRNA_C-linearis_contig10.569.1|Name=mRNA_C-linearis_contig10.569.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at C-linearis_contig10:2464294..2468232+ (Chordaria linearis ClinC8C monoicous)back to top |