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Homology
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: D7FQH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH0_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.240e-36 Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 499 VDQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFEGGF 768
+DQ+DDDRYVR+LD+DSD +++AVLDACDRVGS+RVVGWCKRRWLMD+LFE RDAAAA+DDIDHLRLAS+RS R IKTL+KPA F+GGF
Sbjct: 53 LDQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFDGGF 142
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE) HSP 1 Score: 154 bits (388), Expect = 4.190e-36 Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 502 DQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFEGGFARDDLSPTATAGTTAAA 819
DQ+DDDRYVR+LD+DSD +++AVLDACDRVGS+RVVGWCKRRWLMD+LFE RDAAAA+DDIDHLRLAS+RS R IKTL+KPA F GGF+ + TA + AA
Sbjct: 1086 DQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFNGGFSNNTSQATAAPPVSVAA 1191
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: A0A836CEP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.860e-6 Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 523 YVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFE 759
Y+R+LD++ + ++ C R+GS+ +G +++ +MDV FE PR+A A++D+D L L S GR TL+K D E
Sbjct: 1065 YLRVLDLE-----KRIMGVCKRIGSFNFIGRDRKKHVMDVRFESPREALVALEDVDALGLVSCIKGRPCNTLLKARDCE 1138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1511 |
| Cds size | 1509 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927323.5731387-CDS-C-linearis_contig10:2413227..2413318 | 1622927323.5731387-CDS-C-linearis_contig10:2413227..2413318 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2413228..2413318 + |
| 1690879626.3498867-CDS-C-linearis_contig10:2413227..2413318 | 1690879626.3498867-CDS-C-linearis_contig10:2413227..2413318 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2413228..2413318 + |
| 1622927323.6357238-CDS-C-linearis_contig10:2413691..2414107 | 1622927323.6357238-CDS-C-linearis_contig10:2413691..2414107 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2413692..2414107 + |
| 1690879626.3597002-CDS-C-linearis_contig10:2413691..2414107 | 1690879626.3597002-CDS-C-linearis_contig10:2413691..2414107 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2413692..2414107 + |
| 1622927323.6458116-CDS-C-linearis_contig10:2414490..2414642 | 1622927323.6458116-CDS-C-linearis_contig10:2414490..2414642 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2414491..2414642 + |
| 1690879626.368447-CDS-C-linearis_contig10:2414490..2414642 | 1690879626.368447-CDS-C-linearis_contig10:2414490..2414642 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2414491..2414642 + |
| 1622927323.6550322-CDS-C-linearis_contig10:2415219..2415292 | 1622927323.6550322-CDS-C-linearis_contig10:2415219..2415292 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2415220..2415292 + |
| 1690879626.3766792-CDS-C-linearis_contig10:2415219..2415292 | 1690879626.3766792-CDS-C-linearis_contig10:2415219..2415292 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2415220..2415292 + |
| 1622927323.6665382-CDS-C-linearis_contig10:2415817..2416594 | 1622927323.6665382-CDS-C-linearis_contig10:2415817..2416594 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2415818..2416594 + |
| 1690879626.388105-CDS-C-linearis_contig10:2415817..2416594 | 1690879626.388105-CDS-C-linearis_contig10:2415817..2416594 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2415818..2416594 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.562.1 >prot_C-linearis_contig10.562.1 ID=prot_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=503bp
QRQQQPLGTGPTSAASVGDVSAAAAPSAAEGSEMANECRDSTGGGDRDGQ GAVAAAAAAAATRAPAAQPEALYPQPAAGQSASGARGGGGGGRGGSVEEL ELSVRQYHEYPYPESVGSGSGRGRHSPVGSDQGSSFSARSVGGREETAET RAQMLDPRRVAMSRVPVDQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSY RVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPA DFEGGFARDDLSPTATAGTTAAAAALPAAATGPAAGAGTTAATVGAPAPG ILTPDLSSEQSVPAVATPVPRMWSPPPPRHVTASPLGGSGGGQEGGAAAV AAAAAELAAQVATASQVPDNAFSSTVAVSSGSGSGGGGAAGFHQQRGFGP VPAPQHQKPAVASWAGGAGGDGGAFGAVEGQRNPLLDAAAATAASSGAGA RGDGAARPPVGVSQPYPPVDASAVAGWGIAGRASGGGGGGSGGFLTGLGS LQQ back to topmRNA from alignment at C-linearis_contig10:2413228..2416595+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.562.1 ID=mRNA_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3368bp|location=Sequence derived from alignment at C-linearis_contig10:2413228..2416595+ (Chordaria linearis ClinC8C monoicous) CAACGACAACAACAGCCGCTGGGAACCGGTCCCACCAGTGCCGCCAGCGT
CGGCGACGTTTCTGCGGCGGCCGCCCCATCGGCGGCGGAAGGTAAGGTGG
TTCAGCCTTGCCTCTTTGTTCTTGCAAGCGTATGGCATGTCTTTTCGAGT
TGGCTTTTTCTCTCCACATCGAAGCACACGCGTGTTTCGTGCGTGTCAAC
AAGTGTTTGATCCACTGCGCCTTTTTTTTGCCTTTTGTTTTCTTCGACTG
CCGTACCTCGTCGCCCAATCAACGAGCGCTTCGCATTCTTCTTCTTCGCT
TTCACGAAGTGTATTTTTTCGGTACAGCGGCATCGAGAAAACCGCAAAAG
AAACACGCCTCCTTTACCCTTCTTATTTTTCTCTCGTTACACTCTGCGCG
GTAAACATGGAAGATCTTGAGAAAACACGTCCCGTTTTTTTTTGTTCCCT
CTGCCGCGTCGCAGGCTCGGAGATGGCCAACGAGTGCCGTGACAGCACCG
GCGGCGGGGACAGAGACGGCCAGGGTGCCGTCGCCGCCGCCGCCGCCGCC
GCCGCTACTCGTGCTCCGGCCGCACAACCAGAGGCGTTGTACCCGCAACC
AGCAGCCGGGCAGAGCGCGTCGGGAGCACGGGGAGGAGGCGGAGGAGGAA
GAGGAGGGTCAGTGGAGGAGCTGGAGCTGTCGGTGCGGCAGTACCACGAG
TACCCCTACCCTGAGAGTGTCGGGAGCGGGAGCGGGCGGGGGCGACATAG
CCCCGTCGGGAGCGACCAGGGGAGCTCGTTCAGCGCGAGGTCGGTCGGGG
GCAGGGAGGAAACGGCGGAGACGAGAGCGCAAATGCTAGACCCACGGCGC
GTGGCGATGTCCAGGGTGCCGGTCGACCAGGTTTGTGGGGGTGGTTTGGG
TGCGGGGGGTAGGGGGTGCCGTGGGGGTGCGGGGTCGTTTTTGGCATGCC
CTTTTCCTCGTCGTTGAAGTTTTTGTTGAAAGTCCGCTTTGCCCTTGGTA
CCCACCCCTGCTAGACGCGCTGCCGCAACTACTGCTTGTGGTGGCCGTAC
CACCCAGACTTTGCTTTTTGGATGGGGTAGAGGGGCAATCAGTTCTCGAG
AGCGTTGCCGTAGGGTATTCAAACCGCAGACTTTAGCGTGTGCTTTGTGG
TAGTCCACGAAGGCCAAGCAAGGCCAAGCCGAAGGAGCGCCGCCCGGTTT
TAGGCCACCCACTCCCCTATCCTGTTGCTCTCCTGTCCTGTTTGTGTATG
TCCCGTGATCTAGAAGGACGACGACCGTTACGTCCGGCTGTTGGACGTAG
ACTCAGACGCGGTTTGGCGTGCCGTGCTCGACGCCTGCGACCGCGTGGGG
TCTTATCGGGTGGTGGGGTGGTGCAAGCGGCGGTGGCTCATGGACGTGCT
CTTCGAACGGCCGAGGTACGTGCGTACGTACGTGCTTTCCGAAAAATGTA
TTTTTGGACGCGGCGCGGTGCGGGGGGGAGTCAGTCGACAGGGTTGGGAC
TTTGGTGTGATGCTTGCGGGAAAGTGAATTTCATGGGGTGTCTTTCTCAG
CGTGCCGGAGACGGGAACAAGCAAAAGCACAAGAGAACAAAGAAACAACA
AAAACACCAACAACAAAAACACCAACAACAAAAACACCAACACCACCACC
AACAACAACAACGACAACAACGACAACAACAAAAACACCAACACCACCAC
CAACAACAACAACAACAACAACAACGCCGTTCTGTCTTGGATAGACCCGC
AGCTGCTGCTGTCCGGCCGGGCGGTGCTCTCGTGAGGGAAGACGTCGCTT
AGTTTTCTGCCCCTCTCCACTAGCTTAGCAGAAGCCTGATGATCCTCCAC
CGGACCTTCCGGACGCCGTATTAATCACCCAGCTGCGCAAAAACCAAAAC
GGTACTTACCGTCCGGCAGTCCTGCCCACTCATCTTGGTCTACTACTACT
GTATGCGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGCAGGGATGCCG
CCGCTGCCGTGGACGACATTGATCACTTGCGCCTGGCCAGCGCCCGATCC
GGCAGGCTGATCAAGGTAAGAGTTAAGGCACAAGAAGGCACAGGGCGCAG
GCACACGGCCTCTCCCGGGAGAATGTTTTTGGGGCCAACGGCCGAAGGTA
TCGGGAGCAACACATGTGTGGTCATACGAACAGGCAGCAGTGCCGTGCTT
CGTACATGTCTTGTGTAGAAGGATTGGATAATTAATGGACCCCAAGAAGG
TAAAAGTCCCCCGTAGAGCGCGTAAAGCTTGCTTGGCCTATGAAGGGTTT
TTCGTTTTTCACTTTTCACGTGTGAATGTTTTTTCTTCCGATTTTTGATT
TTTCGCCTGCTTGATCAAGCAAAGCCTTGCGTATGGCCGTTGGTTTCCCT
GCCTGCGAATCGCCCCGGTGACATCGCCTACGCTACTTGTGGGCCGTTCT
GCCTAGCCCTGCCCACACCTGCAGCCTACAGTAGTACCGCGCGTCCTTCC
CGCCTTGCCCTTGGTTGAAACTGTTTTTTATTCCGACAAGACCCGCCATC
CGTAACCACTACCCCCCCCCCCTTCTCCCCTCCCCGACAGACCCTCATCA
AACCCGCCGACTTCGAAGGAGGCTTCGCGAGGGACGACTTATCCCCGACG
GCGACAGCGGGGACAACAGCGGCGGCGGCGGCGTTGCCGGCCGCAGCAAC
GGGTCCGGCAGCGGGAGCGGGGACCACCGCGGCGACGGTGGGGGCCCCGG
CGCCGGGGATCCTGACCCCGGACCTGTCGTCGGAGCAGAGCGTCCCCGCG
GTGGCGACGCCGGTGCCGAGGATGTGGTCGCCGCCGCCCCCGCGCCACGT
GACGGCCTCCCCGCTCGGCGGCAGCGGTGGCGGCCAGGAAGGGGGCGCCG
CGGCAGTCGCGGCGGCGGCGGCCGAGCTGGCGGCGCAGGTGGCCACCGCC
AGCCAGGTCCCGGACAACGCGTTCTCAAGCACGGTGGCGGTTAGTAGTGG
CAGCGGTAGTGGTGGTGGCGGTGCTGCGGGTTTCCACCAGCAGAGGGGGT
TCGGACCAGTACCGGCCCCCCAGCACCAGAAGCCTGCGGTTGCGAGCTGG
GCCGGCGGCGCGGGCGGTGACGGCGGCGCTTTTGGGGCTGTCGAGGGTCA
GCGAAACCCTCTTCTGGATGCCGCTGCTGCTACTGCGGCGTCGTCCGGGG
CCGGCGCGCGCGGCGACGGCGCTGCTCGCCCCCCCGTGGGAGTGAGCCAG
CCTTATCCTCCCGTGGATGCGTCCGCGGTCGCAGGCTGGGGGATCGCGGG
ACGCGCGAGCGGCGGTGGTGGCGGCGGCAGTGGCGGGTTTTTGACGGGGC
TTGGCTCGTTGCAGCAGC back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2413228..2416595+ >mRNA_C-linearis_contig10.562.1 ID=mRNA_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at C-linearis_contig10:2413228..2416595+ (Chordaria linearis ClinC8C monoicous) CAACGACAACAACAGCCGCTGGGAACCGGTCCCACCAGTGCCGCCAGCGT CGGCGACGTTTCTGCGGCGGCCGCCCCATCGGCGGCGGAAGCAACGACAA CAACAGCCGCTGGGAACCGGTCCCACCAGTGCCGCCAGCGTCGGCGACGT TTCTGCGGCGGCCGCCCCATCGGCGGCGGAAGGCTCGGAGATGGCCAACG AGTGCCGTGACAGCACCGGCGGCGGGGACAGAGACGGCCAGGGTGCCGTC GCCGCCGCCGCCGCCGCCGCCGCTACTCGTGCTCCGGCCGCACAACCAGA GGCGTTGTACCCGCAACCAGCAGCCGGGCAGAGCGCGTCGGGAGCACGGG GAGGAGGCGGAGGAGGAAGAGGAGGGTCAGTGGAGGAGCTGGAGCTGTCG GTGCGGCAGTACCACGAGTACCCCTACCCTGAGAGTGTCGGGAGCGGGAG CGGGCGGGGGCGACATAGCCCCGTCGGGAGCGACCAGGGGAGCTCGTTCA GCGCGAGGTCGGTCGGGGGCAGGGAGGAAACGGCGGAGACGAGAGCGCAA ATGCTAGACCCACGGCGCGTGGCGATGTCCAGGGTGCCGGTCGACCAGGC TCGGAGATGGCCAACGAGTGCCGTGACAGCACCGGCGGCGGGGACAGAGA CGGCCAGGGTGCCGTCGCCGCCGCCGCCGCCGCCGCCGCTACTCGTGCTC CGGCCGCACAACCAGAGGCGTTGTACCCGCAACCAGCAGCCGGGCAGAGC GCGTCGGGAGCACGGGGAGGAGGCGGAGGAGGAAGAGGAGGGTCAGTGGA GGAGCTGGAGCTGTCGGTGCGGCAGTACCACGAGTACCCCTACCCTGAGA GTGTCGGGAGCGGGAGCGGGCGGGGGCGACATAGCCCCGTCGGGAGCGAC CAGGGGAGCTCGTTCAGCGCGAGGTCGGTCGGGGGCAGGGAGGAAACGGC GGAGACGAGAGCGCAAATGCTAGACCCACGGCGCGTGGCGATGTCCAGGG TGCCGGTCGACCAGAAGGACGACGACCGTTACGTCCGGCTGTTGGACGTA GACTCAGACGCGGTTTGGCGTGCCGTGCTCGACGCCTGCGACCGCGTGGG GTCTTATCGGGTGGTGGGGTGGTGCAAGCGGCGGTGGCTCATGGACGTGC TCTTCGAACGGCCGAGAAGGACGACGACCGTTACGTCCGGCTGTTGGACG TAGACTCAGACGCGGTTTGGCGTGCCGTGCTCGACGCCTGCGACCGCGTG GGGTCTTATCGGGTGGTGGGGTGGTGCAAGCGGCGGTGGCTCATGGACGT GCTCTTCGAACGGCCGAGGGATGCCGCCGCTGCCGTGGACGACATTGATC ACTTGCGCCTGGCCAGCGCCCGATCCGGCAGGCTGATCAAGGGATGCCGC CGCTGCCGTGGACGACATTGATCACTTGCGCCTGGCCAGCGCCCGATCCG GCAGGCTGATCAAGACCCTCATCAAACCCGCCGACTTCGAAGGAGGCTTC GCGAGGGACGACTTATCCCCGACGGCGACAGCGGGGACAACAGCGGCGGC GGCGGCGTTGCCGGCCGCAGCAACGGGTCCGGCAGCGGGAGCGGGGACCA CCGCGGCGACGGTGGGGGCCCCGGCGCCGGGGATCCTGACCCCGGACCTG TCGTCGGAGCAGAGCGTCCCCGCGGTGGCGACGCCGGTGCCGAGGATGTG GTCGCCGCCGCCCCCGCGCCACGTGACGGCCTCCCCGCTCGGCGGCAGCG GTGGCGGCCAGGAAGGGGGCGCCGCGGCAGTCGCGGCGGCGGCGGCCGAG CTGGCGGCGCAGGTGGCCACCGCCAGCCAGGTCCCGGACAACGCGTTCTC AAGCACGGTGGCGGTTAGTAGTGGCAGCGGTAGTGGTGGTGGCGGTGCTG CGGGTTTCCACCAGCAGAGGGGGTTCGGACCAGTACCGGCCCCCCAGCAC CAGAAGCCTGCGGTTGCGAGCTGGGCCGGCGGCGCGGGCGGTGACGGCGG CGCTTTTGGGGCTGTCGAGGGTCAGCGAAACCCTCTTCTGGATGCCGCTG CTGCTACTGCGGCGTCGTCCGGGGCCGGCGCGCGCGGCGACGGCGCTGCT CGCCCCCCCGTGGGAGTGAGCCAGCCTTATCCTCCCGTGGATGCGTCCGC GGTCGCAGGCTGGGGGATCGCGGGACGCGCGAGCGGCGGTGGTGGCGGCG GCAGTGGCGGGTTTTTGACGGGGCTTGGCTCGTTGCAGCAGACCCTCATC AAACCCGCCGACTTCGAAGGAGGCTTCGCGAGGGACGACTTATCCCCGAC GGCGACAGCGGGGACAACAGCGGCGGCGGCGGCGTTGCCGGCCGCAGCAA CGGGTCCGGCAGCGGGAGCGGGGACCACCGCGGCGACGGTGGGGGCCCCG GCGCCGGGGATCCTGACCCCGGACCTGTCGTCGGAGCAGAGCGTCCCCGC GGTGGCGACGCCGGTGCCGAGGATGTGGTCGCCGCCGCCCCCGCGCCACG TGACGGCCTCCCCGCTCGGCGGCAGCGGTGGCGGCCAGGAAGGGGGCGCC GCGGCAGTCGCGGCGGCGGCGGCCGAGCTGGCGGCGCAGGTGGCCACCGC CAGCCAGGTCCCGGACAACGCGTTCTCAAGCACGGTGGCGGTTAGTAGTG GCAGCGGTAGTGGTGGTGGCGGTGCTGCGGGTTTCCACCAGCAGAGGGGG TTCGGACCAGTACCGGCCCCCCAGCACCAGAAGCCTGCGGTTGCGAGCTG GGCCGGCGGCGCGGGCGGTGACGGCGGCGCTTTTGGGGCTGTCGAGGGTC AGCGAAACCCTCTTCTGGATGCCGCTGCTGCTACTGCGGCGTCGTCCGGG GCCGGCGCGCGCGGCGACGGCGCTGCTCGCCCCCCCGTGGGAGTGAGCCA GCCTTATCCTCCCGTGGATGCGTCCGCGGTCGCAGGCTGGGGGATCGCGG GACGCGCGAGCGGCGGTGGTGGCGGCGGCAGTGGCGGGTTTTTGACGGGG CTTGGCTCGTTGCAGCAG back to top
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