Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 507 |
| Cds size | 408 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927325.962564-UTR-C-linearis_contig10:2393180..2393256 | 1622927325.962564-UTR-C-linearis_contig10:2393180..2393256 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2393181..2393256 + |
| 1690879627.769099-UTR-C-linearis_contig10:2393180..2393256 | 1690879627.769099-UTR-C-linearis_contig10:2393180..2393256 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2393181..2393256 + |
| 1622927325.98592-UTR-C-linearis_contig10:2393664..2393687 | 1622927325.98592-UTR-C-linearis_contig10:2393664..2393687 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2393665..2393687 + |
| 1690879627.7916002-UTR-C-linearis_contig10:2393664..2393687 | 1690879627.7916002-UTR-C-linearis_contig10:2393664..2393687 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2393665..2393687 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927325.9732592-CDS-C-linearis_contig10:2393256..2393664 | 1622927325.9732592-CDS-C-linearis_contig10:2393256..2393664 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2393257..2393664 + |
| 1690879627.7796688-CDS-C-linearis_contig10:2393256..2393664 | 1690879627.7796688-CDS-C-linearis_contig10:2393256..2393664 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2393257..2393664 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.558.1 >prot_C-linearis_contig10.558.1 ID=prot_C-linearis_contig10.558.1|Name=mRNA_C-linearis_contig10.558.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=136bp
MRERDGDRRHDDSNNCQAAFRHIAEPTACAIDALNFHSAWVQYGNISSGM
SPSPRTRSMLDGLLLEAIEPRPTKTDKTDKTDKHASSQFRLTSVAVHLIK
TITLPPRSIADELYSTPAYLATSLLRNDEDTIKKR* back to topmRNA from alignment at C-linearis_contig10:2393181..2393687+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.558.1 ID=mRNA_C-linearis_contig10.558.1|Name=mRNA_C-linearis_contig10.558.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at C-linearis_contig10:2393181..2393687+ (Chordaria linearis ClinC8C monoicous)
CGAGTCGAACTCCTCGACCACCACGGCGTACGTCACGTTGTCCTTTACAC
GGTACACCTGGGTTCACAGCGGAGTCATGAGAGAAAGAGACGGAGACAGA
CGGCACGACGACAGCAACAATTGCCAAGCGGCCTTCCGTCACATTGCAGA
ACCAACCGCTTGTGCTATTGATGCCCTCAACTTCCATTCCGCTTGGGTAC
AATACGGCAATATTTCCTCCGGAATGTCCCCTTCTCCTCGGACTCGATCA
ATGCTGGATGGTCTCCTGCTTGAGGCAATCGAACCTCGGCCGACAAAGAC
AGACAAGACAGACAAGACAGACAAACATGCATCCTCCCAGTTCAGGCTAA
CGTCTGTCGCTGTTCATCTGATTAAAACGATCACCCTTCCTCCTCGCTCG
ATCGCAGATGAACTCTACAGTACCCCTGCCTATTTAGCCACTTCCCTTCT
CCGCAACGATGAAGACACAATAAAAAAAAGATAGCCATGAAGGCAGGCAA
CACCCCA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2393181..2393687+ >mRNA_C-linearis_contig10.558.1 ID=mRNA_C-linearis_contig10.558.1|Name=mRNA_C-linearis_contig10.558.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at C-linearis_contig10:2393181..2393687+ (Chordaria linearis ClinC8C monoicous)
ATGAGAGAAAGAGACGGAGACAGACGGCACGACGACAGCAACAATTGCCA
AGCGGCCTTCCGTCACATTGCAGAACCAACCGCTTGTGCTATTGATGCCC
TCAACTTCCATTCCGCTTGGGTACAATACGGCAATATTTCCTCCGGAATG
TCCCCTTCTCCTCGGACTCGATCAATGCTGGATGGTCTCCTGCTTGAGGC
AATCGAACCTCGGCCGACAAAGACAGACAAGACAGACAAGACAGACAAAC
ATGCATCCTCCCAGTTCAGGCTAACGTCTGTCGCTGTTCATCTGATTAAA
ACGATCACCCTTCCTCCTCGCTCGATCGCAGATGAACTCTACAGTACCCC
TGCCTATTTAGCCACTTCCCTTCTCCGCAACGATGAAGACACAATAAAAA
AAAGATAGATGAGAGAAAGAGACGGAGACAGACGGCACGACGACAGCAAC
AATTGCCAAGCGGCCTTCCGTCACATTGCAGAACCAACCGCTTGTGCTAT
TGATGCCCTCAACTTCCATTCCGCTTGGGTACAATACGGCAATATTTCCT
CCGGAATGTCCCCTTCTCCTCGGACTCGATCAATGCTGGATGGTCTCCTG
CTTGAGGCAATCGAACCTCGGCCGACAAAGACAGACAAGACAGACAAGAC
AGACAAACATGCATCCTCCCAGTTCAGGCTAACGTCTGTCGCTGTTCATC
TGATTAAAACGATCACCCTTCCTCCTCGCTCGATCGCAGATGAACTCTAC
AGTACCCCTGCCTATTTAGCCACTTCCCTTCTCCGCAACGATGAAGACAC
AATAAAAAAAAGATAG back to top
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