mRNA_C-linearis_contig10.553.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.553.1
Unique NamemRNA_C-linearis_contig10.553.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.160e-28
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            +AR EWN+CPE V EAL WM +A VGLLD+ASVG LTPVCKAF +LIEAAEGA E A+NLEEL SWC+FLVGVFIE
Sbjct:   67 QARYEWNNCPEAVGEALEWMASATVGLLDMASVGPLTPVCKAFTSLIEAAEGAIEVAKNLEELVSWCSFLVGVFIE 142          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.390e-27
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    7 RGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            RGEW+DCPE   +AL WM + AVGLLD+ASVG L PVCKAF ALIEAA+GATE  ENL EL +WCAFLVGVFIE
Sbjct:   86 RGEWDDCPEGATDALEWMASTAVGLLDIASVGPLIPVCKAFTALIEAAQGATEVVENLRELVTWCAFLVGVFIE 159          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.370e-25
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   10 GEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            GEW++CPE   +AL WM + AVGLLDVASVG LTPVC+AF ALIEAA+GA E  ENL EL +WCAFLVGV IE
Sbjct:   51 GEWDNCPEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIE 123          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.030e-25
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   10 GEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            GEW++CPE   +AL WM + AVGLLD+ASVG LTPVCKAF ALIEAA+GA E  +NL EL +WCAFLVGV IE
Sbjct:   51 GEWDNCPEGARDALEWMASTAVGLLDIASVGPLTPVCKAFTALIEAAQGAMEVVKNLRELVTWCAFLVGVLIE 123          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5KLS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.890e-20
Identity = 45/65 (69.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGS 195
            R   EWN CPE + EAL WM  A VGLLD+AS G LTPVCKAF  LIEAAEGA E AENLE+L S
Sbjct:   31 RPGNEWNICPEAIGEALEWMALATVGLLDMASGGPLTPVCKAFTMLIEAAEGAIEVAENLEKLVS 95          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.370e-20
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   10 GEW-NDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            GEW N CPE V EAL WM +  VGLL+VASVG L P+C+AF  LI+AAEGA EA ENL EL +WCAFL  V ++
Sbjct:   28 GEWANGCPEDVGEALAWMASGVVGLLNVASVGPLMPICEAFKGLIQAAEGAAEADENLRELIAWCAFLTDVLLQ 101          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.070e-20
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            RA  EW  CP  V+EAL WMTT+AVG+L VASVG L PVC+AF ALIEAAEGA E  + L+ L S CAFL  V I+
Sbjct:   92 RATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQ 167          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.090e-20
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            RA  EW  CP  V+EAL WMTT+AVG+L VASVG L PVC+AF ALIEAAEGA E  + L+ L S CAFL  V I+
Sbjct:   75 RATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQ 150          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.120e-20
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            RA  EW  CP + +EAL WMTTAAVG+LDVASVG L PVC+A  ALIEAAEGA E  + ++ L S CAFL  V I+
Sbjct:   50 RATEEWEACPTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQ 125          
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.420e-19
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228
            RA  EW  CP + +EAL W+ TA VG+LDVASVG L PVC+AF ALIEAAEGA E+   L+ L S CAFL  V I+
Sbjct:   38 RATEEWEACPTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQ 113          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LL58_ECTSI1.160e-2876.32NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JJK0_9PHAE1.390e-2774.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK53_9PHAE1.370e-2571.23NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5J6Q8_9PHAE5.030e-2569.86NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KLS6_9PHAE2.890e-2069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L982_9PHAE3.370e-2063.51NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI7.070e-2063.16NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI7.090e-2063.16NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI7.120e-2061.84NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE2.420e-1960.53NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2371387..2371614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog2880.D8LL58
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size229
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927340.8732436-CDS-C-linearis_contig10:2371386..23716141622927340.8732436-CDS-C-linearis_contig10:2371386..2371614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2371387..2371614 +
1690879637.9527376-CDS-C-linearis_contig10:2371386..23716141690879637.9527376-CDS-C-linearis_contig10:2371386..2371614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2371387..2371614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.553.1prot_C-linearis_contig10.553.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2371387..2371614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.553.1

>prot_C-linearis_contig10.553.1 ID=prot_C-linearis_contig10.553.1|Name=mRNA_C-linearis_contig10.553.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp
RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAA
EGATEAAENLEELGSWCAFLVGVFIE
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mRNA from alignment at C-linearis_contig10:2371387..2371614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.553.1 ID=mRNA_C-linearis_contig10.553.1|Name=mRNA_C-linearis_contig10.553.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at C-linearis_contig10:2371387..2371614+ (Chordaria linearis ClinC8C monoicous)
CGTGCCCGGGGTGAATGGAACGATTGTCCTGAGATTGTCGAGGAAGCGTT GGGATGGATGACAACAGCCGCCGTGGGCTTGCTGGATGTCGCAAGTGTGG GCGCCCTCACGCCCGTGTGCAAGGCCTTTATAGCACTGATCGAGGCCGCA GAAGGCGCGACAGAGGCAGCTGAGAACCTGGAGGAACTGGGTTCTTGGTG CGCGTTCCTCGTTGGTGTCTTCATCGAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2371387..2371614+

>mRNA_C-linearis_contig10.553.1 ID=mRNA_C-linearis_contig10.553.1|Name=mRNA_C-linearis_contig10.553.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at C-linearis_contig10:2371387..2371614+ (Chordaria linearis ClinC8C monoicous)
CGTGCCCGGGGTGAATGGAACGATTGTCCTGAGATTGTCGAGGAAGCGTT
GGGATGGATGACAACAGCCGCCGTGGGCTTGCTGGATGTCGCAAGTGTGG
GCGCCCTCACGCCCGTGTGCAAGGCCTTTATAGCACTGATCGAGGCCGCA
GAAGGCGCGACAGAGGCAGCTGAGAACCTGGAGGAACTGGGTTCTTGGTG
CGCGTTCCTCGTTGGTGTCTTCATCGAGCGTGCCCGGGGTGAATGGAACG
ATTGTCCTGAGATTGTCGAGGAAGCGTTGGGATGGATGACAACAGCCGCC
GTGGGCTTGCTGGATGTCGCAAGTGTGGGCGCCCTCACGCCCGTGTGCAA
GGCCTTTATAGCACTGATCGAGGCCGCAGAAGGCGCGACAGAGGCAGCTG
AGAACCTGGAGGAACTGGGTTCTTGGTGCGCGTTCCTCGTTGGTGTCTTC
ATCGAG
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