mRNA_C-linearis_contig10.553.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.160e-28 Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1 Query: 1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 +AR EWN+CPE V EAL WM +A VGLLD+ASVG LTPVCKAF +LIEAAEGA E A+NLEEL SWC+FLVGVFIE Sbjct: 67 QARYEWNNCPEAVGEALEWMASATVGLLDMASVGPLTPVCKAFTSLIEAAEGAIEVAKNLEELVSWCSFLVGVFIE 142
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.390e-27 Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 1 Query: 7 RGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 RGEW+DCPE +AL WM + AVGLLD+ASVG L PVCKAF ALIEAA+GATE ENL EL +WCAFLVGVFIE Sbjct: 86 RGEWDDCPEGATDALEWMASTAVGLLDIASVGPLIPVCKAFTALIEAAQGATEVVENLRELVTWCAFLVGVFIE 159
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.370e-25 Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 10 GEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 GEW++CPE +AL WM + AVGLLDVASVG LTPVC+AF ALIEAA+GA E ENL EL +WCAFLVGV IE Sbjct: 51 GEWDNCPEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIE 123
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.030e-25 Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 10 GEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 GEW++CPE +AL WM + AVGLLD+ASVG LTPVCKAF ALIEAA+GA E +NL EL +WCAFLVGV IE Sbjct: 51 GEWDNCPEGARDALEWMASTAVGLLDIASVGPLTPVCKAFTALIEAAQGAMEVVKNLRELVTWCAFLVGVLIE 123
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5KLS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS6_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 2.890e-20 Identity = 45/65 (69.23%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGS 195 R EWN CPE + EAL WM A VGLLD+AS G LTPVCKAF LIEAAEGA E AENLE+L S Sbjct: 31 RPGNEWNICPEAIGEALEWMALATVGLLDMASGGPLTPVCKAFTMLIEAAEGAIEVAENLEKLVS 95
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 3.370e-20 Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 10 GEW-NDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 GEW N CPE V EAL WM + VGLL+VASVG L P+C+AF LI+AAEGA EA ENL EL +WCAFL V ++ Sbjct: 28 GEWANGCPEDVGEALAWMASGVVGLLNVASVGPLMPICEAFKGLIQAAEGAAEADENLRELIAWCAFLTDVLLQ 101
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 7.070e-20 Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 RA EW CP V+EAL WMTT+AVG+L VASVG L PVC+AF ALIEAAEGA E + L+ L S CAFL V I+ Sbjct: 92 RATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQ 167
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 7.090e-20 Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 RA EW CP V+EAL WMTT+AVG+L VASVG L PVC+AF ALIEAAEGA E + L+ L S CAFL V I+ Sbjct: 75 RATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQ 150
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 7.120e-20 Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 RA EW CP + +EAL WMTTAAVG+LDVASVG L PVC+A ALIEAAEGA E + ++ L S CAFL V I+ Sbjct: 50 RATEEWEACPTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQ 125
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.420e-19 Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 1 Query: 1 RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAEGATEAAENLEELGSWCAFLVGVFIE 228 RA EW CP + +EAL W+ TA VG+LDVASVG L PVC+AF ALIEAAEGA E+ L+ L S CAFL V I+ Sbjct: 38 RATEEWEACPTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQ 113 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.553.1 >prot_C-linearis_contig10.553.1 ID=prot_C-linearis_contig10.553.1|Name=mRNA_C-linearis_contig10.553.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp RARGEWNDCPEIVEEALGWMTTAAVGLLDVASVGALTPVCKAFIALIEAAback to top mRNA from alignment at C-linearis_contig10:2371387..2371614+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.553.1 ID=mRNA_C-linearis_contig10.553.1|Name=mRNA_C-linearis_contig10.553.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at C-linearis_contig10:2371387..2371614+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2371387..2371614+ >mRNA_C-linearis_contig10.553.1 ID=mRNA_C-linearis_contig10.553.1|Name=mRNA_C-linearis_contig10.553.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at C-linearis_contig10:2371387..2371614+ (Chordaria linearis ClinC8C monoicous)back to top |