mRNA_C-linearis_contig10.549.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: D7FQH7_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQH7_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 3.480e-162 Identity = 220/278 (79.14%), Postives = 249/278 (89.57%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKG-QAAYTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYLIDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLPC PSD EKV+YH SGR +L+TGF+S+CTLL GM LFT SS +FYWYGAPT F +V++CC+YFGVS+WG+DF+P++H ++R G A++ TVDVFLPVCNEP VLLANTWNHVLA+DYPH+ VHVLDDG KDEVKALA +YGF+YIRRDNRPELKKAGNLR+AFARTSGE I IFDADFCPRPDFLRETLPYL+DPSIGI+QT QFFRRREEQTW+EQGAG+SQE FYRLIQVN DRFNAAVCVGSC +YRR AVEPFGGVAPIEHSEDMYTG Sbjct: 357 LVLPCGPSDEEKVLYHKSGRLTMLSTGFVSFCTLLTGMSLFTMSSPHFYWYGAPTIFVVVHICCHYFGVSIWGRDFDPEIHACVVRHGLDVAFSPTVDVFLPVCNEPAVLLANTWNHVLAMDYPHVTVHVLDDGAKDEVKALAGEYGFQYIRRDNRPELKKAGNLRHAFARTSGEVIVIFDADFCPRPDFLRETLPYLVDPSIGILQTPQFFRRREEQTWVEQGAGASQEHFYRLIQVNLDRFNAAVCVGSCGLYRRTAVEPFGGVAPIEHSEDMYTG 634
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: D7G9A2_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A2_ECTSI) HSP 1 Score: 386 bits (991), Expect = 1.250e-122 Identity = 184/279 (65.95%), Postives = 216/279 (77.42%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQA-AYTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYL-IDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLPC PSD EK++YH SGR ++ IS+ L GM LFT + FYW+GAP F + Y C+Y G+++WG+DF+P+VH ++LR Q Y +VDVFLPVC EP LLANTW HV ALDYP V VLDDG DEV ALA K+GFEY+ R++ P LKKAGNLR AFARTSGEAI IFDADFCPRPDFL+ET+PY DP+IGIVQT Q+FR R+EQTWIEQGAG SQE FYR++QVN DRFNAAVCVGSC +YRR A+EP GG+A IEHSEDMYTG Sbjct: 668 LVLPCPPSDEEKIIYHHSGRLGLITCAMISFAALTWGMWLFTMVTPAFYWFGAPAIFLIFYTACHYLGIAIWGRDFKPEVHTEVLRASQEKGYRPSVDVFLPVCKEPLYLLANTWQHVAALDYPDFKVFVLDDGASDEVAALASKFGFEYVVREDAPALKKAGNLRNAFARTSGEAIAIFDADFCPRPDFLKETVPYFGEDPTIGIVQTPQYFRHRKEQTWIEQGAGVSQEFFYRMVQVNQDRFNAAVCVGSCGLYRRTALEPLGGMAAIEHSEDMYTG 946
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: A0A6H5K7X7_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X7_9PHAE) HSP 1 Score: 360 bits (923), Expect = 4.120e-112 Identity = 182/318 (57.23%), Postives = 215/318 (67.61%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQA-AYTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEY---------------------------------------IRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYL-IDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLPC PSD EK++YH SGR ++ I++ L GM LFT + FYW+GAP F + Y C+Y GV++WG+DF+P+VH ++LR + Y +VDVFLPVC EP LLANTW HV ALDYP V VLDDG DEVKALA K+GFE + R++ P LKKAGNLR AFARTSGEAI IFDADFCPR DFL+ET+PY DP+IGIVQT Q+FR R+EQTWIEQGAG SQE FYR++QVN DRFNAAVCVGSC +YRR A+EP GG+A IEHSEDMYTG Sbjct: 731 LVLPCPPSDEEKIIYHHSGRLGLIMCAMIAFAALTWGMWLFTMVTPAFYWFGAPAIFLIFYTACHYLGVAIWGRDFKPEVHAEVLRASEEKGYRPSVDVFLPVCKEPLHLLANTWQHVAALDYPDFKVFVLDDGASDEVKALASKFGFESRYVPSPIVTYFVLSRPPYRYCSMLLPDAATHCCRGIAEDVLREDAPALKKAGNLRNAFARTSGEAIAIFDADFCPRADFLKETVPYFGEDPTIGIVQTPQYFRHRKEQTWIEQGAGVSQEFFYRMVQVNQDRFNAAVCVGSCGLYRRTALEPLGGMAAIEHSEDMYTG 1048
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: D7FP53_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP53_ECTSI) HSP 1 Score: 345 bits (886), Expect = 4.370e-107 Identity = 170/311 (54.66%), Postives = 215/311 (69.13%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQAA-YTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEY---------------------------------IRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYLIDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLPCAPSD EK +YH +GR ++ G +S L GM LFT ++ +FYW+ APTAF + Y+ YFGV++WGKDF+P+ H +RK Q Y +VD+FLPVC EPT LL NTW +V ALDYP++ VHVLDDG K+EV+ LAE +GF+ IRR N PELKKAGNLRYAFARTSGE + IFDADFCPRP+FL+ET PY D + I+QT QFFR REEQTW+E+GAG +QE FYR++QVN ++F+A++CVG+C VYRR A+ PFGG A I +SED++TG Sbjct: 685 LVLPCAPSDEEKEIYHKTGRCFLVTAGVVSVGALSAGMWLFTFAAPFFYWFAAPTAFIMGYLLLSYFGVAVWGKDFDPEDHAARIRKAQHEHYYPSVDIFLPVCREPTHLLDNTWKYVRALDYPNVTVHVLDDGAKEEVRQLAEMHGFQSSPFGATKAHREQPEWLAWWECERVALRRSRFTDIRRTNIPELKKAGNLRYAFARTSGEVLVIFDADFCPRPEFLKETTPYFKDRDVAILQTPQFFRYREEQTWVEKGAGVTQELFYRMVQVNRNKFDASICVGTCGVYRREALAPFGGTAAIGYSEDVHTG 995
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: A0A6H5KYP8_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP8_9PHAE) HSP 1 Score: 340 bits (872), Expect = 6.160e-106 Identity = 168/302 (55.63%), Postives = 211/302 (69.87%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQAA-YTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEY------------------------IRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYLIDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLPCAPSD EKV+YH +GR ++ G +S L GM LFT ++ +FYW+ APTAF + Y+ YFGV++WGKDF+P+ H LRK Q Y +VD+FLPVC EPT LL NTW +V ALDYP++ VHVLDDG K+E +A + + IRR N PELKKAGNLRYAFARTSGE + IFDADFCPRP+FL+ET PY D + I+QT QFFR REEQTW+E+GAG +QE FYR++QVN D+F+A++CVG+C VYRR A+ PFGG A I +SED++TG Sbjct: 630 LVLPCAPSDEEKVIYHKTGRCFLVTAGVVSVGALSAGMWLFTFAAPFFYWFAAPTAFIMGYLLLSYFGVAVWGKDFDPEDHAARLRKAQHEHYYPSVDIFLPVCREPTHLLDNTWKYVRALDYPNVTVHVLDDGAKEERRASERENTCDRAPIVSCKVQTMHASQNTLETETADIRRTNIPELKKAGNLRYAFARTSGEVLVIFDADFCPRPEFLKETTPYFKDRDVAILQTPQFFRYREEQTWVEKGAGVTQELFYRMVQVNRDKFDASICVGTCGVYRREALAPFGGTAAIGYSEDVHTG 931
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: D7G9A6_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9A6_ECTSI) HSP 1 Score: 330 bits (845), Expect = 1.060e-101 Identity = 166/278 (59.71%), Postives = 197/278 (70.86%), Query Frame = 1 Query: 4 VLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQA-AYTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYL-IDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 VLPCAP+D EKV+Y +GR+ ++ IS+ TL + FG++MWG+DF+ D H ++L+ + Y +VDVFLPVC EP LLANTW +V ALDYP V VLDDG DEVKALA +GFEY+ R N PELKKAGNLR AFA TSGEAI IFDADFCPRP+FL+ET+PY DP+IGIVQT QFFR R+EQTWIEQGAG SQE FYR++Q+N DRFNAAVCVGSC +YRR A+EP GG+A IEHSEDMYTG Sbjct: 659 VLPCAPTDEEKVIYRNTGRFGIITCAVISFITLT-----------------------------WDFGIAMWGRDFKLDEHAEVLKASEEKGYMPSVDVFLPVCKEPLYLLANTWKYVAALDYPDFKVFVLDDGASDEVKALASVFGFEYVLRSNAPELKKAGNLRNAFAMTSGEAIAIFDADFCPRPEFLKETVPYFGEDPTIGIVQTPQFFRVRDEQTWIEQGAGVSQEFFYRMVQMNQDRFNAAVCVGSCGLYRRTALEPLGGMAAIEHSEDMYTG 907
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: D7G9A1_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A1_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.150e-91 Identity = 141/209 (67.46%), Postives = 169/209 (80.86%), Query Frame = 1 Query: 202 GVSMWGKDFEPDVHEDILRKGQA-AYTATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYL-IDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDM 822 GV++WGKDF+P+VH ++L+ + Y +VDVFLP+C EP LLANTW +V ALDYP V VLDDG + +ALA +GFEY+ R + P LKKAGNLR AFARTSGEAI IFDADFCPR DFL+ET+PYL DP+IGIVQT QFFR R+EQTW+EQGAG +QE FYR++Q+N DRFNAAVCVGSC +YRRAA+EP GG+A IEHSEDM Sbjct: 454 GVAIWGKDFKPEVHAEVLKASEEKGYRPSVDVFLPMCKEPLRLLANTWKYVAALDYPDFKVFVLDDGASEGAQALASTFGFEYVLRADVPALKKAGNLRNAFARTSGEAIAIFDADFCPRADFLKETVPYLGEDPTIGIVQTPQFFRHRKEQTWVEQGAGVTQEFFYRMVQMNQDRFNAAVCVGSCGLYRRAALEPLGGMAAIEHSEDM 662
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: A0A8E2E4K1_9PEZI (Glycosyltransferase family 2 protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2E4K1_9PEZI) HSP 1 Score: 283 bits (723), Expect = 7.440e-89 Identity = 146/282 (51.77%), Postives = 189/282 (67.02%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQA--AYTATVDVFLPVCNEPTVLLANTWNHVLALDYP--HLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLP-YLIDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 ++LP P+D EK Y + R + G ++ +L GM LFT + F W+G Y+ YF V + GKD++ D H+ +L+ A TVD+FLP C EP V+L NT+ HV ALDYP L VHV+DDG + VK LAE+YGF Y RD+RP LKKAGNLR+ FARTS E I+DADFCPRPDFL E +P +L DP I+QT QFFR ++QTW+EQGAG++QE FYR++QVN +R+ A++CVGS AVYRRAA+E GG A I SED++TG Sbjct: 33 IILPVCPTDEEKYCYLRTNRIPLYVLGIFAFLSLSAGMWLFTVCAYIFAWFGLFVVLLQFYLMVSYF-VGVVGKDYDYDSHKQVLQSHAVTPANAPTVDIFLPCCMEPLVILENTYKHVRALDYPTGKLQVHVMDDGNQASVKELAERYGFNYSVRDDRPRLKKAGNLRWHFARTSAEFFVIYDADFCPRPDFLHELIPEHLADPKTAIIQTPQFFRVSDDQTWVEQGAGATQELFYRVVQVNRNRWGASICVGSNAVYRRAALEEVGGTAEIGFSEDVHTG 313
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: A0A5C3MII2_9AGAR (Nucleotide-diphospho-sugar transferase n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3MII2_9AGAR) HSP 1 Score: 283 bits (723), Expect = 7.640e-89 Identity = 147/281 (52.31%), Postives = 190/281 (67.62%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQAAYT---ATVDVFLPVCNEPTVLLANTWNHVLALDYPHLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLPYLID-PSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLP P+D+EK +Y + R + G S+ ++ VGM F S++ FYW+G VY+ Y V GKDF+ + H ++ + +YT +VD++LP C EP +L NT+ +V L+YP+ V VLDDGG D VK LAE+YGF YI RDN+P LKKAGNLRYAFART G+ TIFDADFCPR DFL LPY+ + IVQ+ QFFR +EQTW+EQGA S+QE FYR++QVN DR+ A++CVGS AVYRRAA+ GG A I HSED++TG Sbjct: 30 LVLPSPPTDAEKFLYAKTRRLPLYLFGTFSFLSVSVGMWFFAISTSMFYWFGVFVGLIQVYLIISYI-VGYCGKDFDTEAHAKLME--EHSYTDNFPSVDIYLPCCKEPLDILENTYIYVAKLEYPNYKVFVLDDGGMDSVKHLAERYGFNYICRDNKPHLKKAGNLRYAFARTEGDFFTIFDADFCPRADFLNTILPYMKKYEDVAIVQSPQFFRPCKEQTWVEQGASSTQELFYRVVQVNRDRWGASICVGSNAVYRRAALAEVGGTAEIGHSEDVHTG 307
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Match: R8BL78_PHAM7 (Putative cellulose synthase catalytic subunit protein n=1 Tax=Phaeoacremonium minimum (strain UCR-PA7) TaxID=1286976 RepID=R8BL78_PHAM7) HSP 1 Score: 279 bits (713), Expect = 8.190e-89 Identity = 145/282 (51.42%), Postives = 189/282 (67.02%), Query Frame = 1 Query: 1 LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWYGAPTAFALVYMCCYYFGVSMWGKDFEPDVHEDILRKGQAAYTA--TVDVFLPVCNEPTVLLANTWNHVLALDYP--HLIVHVLDDGGKDEVKALAEKYGFEYIRRDNRPELKKAGNLRYAFARTSGEAITIFDADFCPRPDFLRETLP-YLIDPSIGIVQTQQFFRRREEQTWIEQGAGSSQEPFYRLIQVNFDRFNAAVCVGSCAVYRRAAVEPFGGVAPIEHSEDMYTG 831 LVLP P+D EK+ Y + R + G S+ +L GM LF S F WY F +Y+ YF V + GKD++ H++ + + TVD++LPVC EP +L NTWNH+ L +P + VHVLDDG ++ V+ LA++YGF YI R++RP LKKAGNLR+AFARTSG+ IFDADFCPRPDFL E LP +L D IVQT QFFR +QTW+EQGAG++QE FYR++QVN +R+ A++CVGS AVYRRAA+E GG A I SED++TG Sbjct: 136 LVLPTCPTDEEKLSYLHTNRVPLYIFGLFSFLSLSAGMWLFALCSIIFVWYSVFVGFVDIYLIISYF-VGLVGKDWDYAAHQEAVANNPVIPESAPTVDIYLPVCAEPIEILENTWNHIERLQWPAGKIEVHVLDDGAQEIVRDLAQRYGFNYIVREDRPRLKKAGNLRWAFARTSGDFFAIFDADFCPRPDFLMEILPEHLADDKTAIVQTPQFFRITNDQTWVEQGAGATQELFYRVVQVNRNRWGASICVGSNAVYRRAALEEVGGTAEIGFSEDVHTG 416 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.549.1 >prot_C-linearis_contig10.549.1 ID=prot_C-linearis_contig10.549.1|Name=mRNA_C-linearis_contig10.549.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=277bp LVLPCAPSDSEKVMYHASGRWVVLATGFISYCTLLVGMCLFTQSSAYFYWback to top mRNA from alignment at C-linearis_contig10:2244165..2246771- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.549.1 ID=mRNA_C-linearis_contig10.549.1|Name=mRNA_C-linearis_contig10.549.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2607bp|location=Sequence derived from alignment at C-linearis_contig10:2244165..2246771- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2244165..2246771- >mRNA_C-linearis_contig10.549.1 ID=mRNA_C-linearis_contig10.549.1|Name=mRNA_C-linearis_contig10.549.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at C-linearis_contig10:2244165..2246771- (Chordaria linearis ClinC8C monoicous)back to top |