mRNA_C-linearis_contig10.548.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI) HSP 1 Score: 224 bits (571), Expect = 2.020e-59 Identity = 110/232 (47.41%), Postives = 149/232 (64.22%), Query Frame = 2 Query: 359 YTQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTLIDEDD 1054
+ QE+++ + VSP+ W INDGE PSHTW P+SA M A ADA + ++P LFTRK Y+LFFSGG GR ++S WDY DREF E++VD+AKVCSH+R +++GAMD+ RE + R++A + P G V +P+DADSD + + R + ++GRT+ADTS+AS +LPLI PKC+E GCT+ G+ MV C CDG LHRSCG E+D
Sbjct: 481 FKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRA-PAGVVNFPVDADSDA-------GSDSDVAXXXXXXXARRQWDRIGRTAADTSSASEELPLIICPKCVEPGCTKAGNIAMVACNLCDGDLHRSCGVRGGEED 704
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.350e-53 Identity = 109/256 (42.58%), Postives = 146/256 (57.03%), Query Frame = 2 Query: 359 YTQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTL----IDEDDDDCTDRQCNKCSSAGKGKGR 1114
+ QE+++ + VSPL W+I D + PS +W PSSA M A ADA + P LF RKH Y+LFF+GG R TSH WD DREF +++VD+AKVCSH+ L+++GAMD RE REVA R P G + DSD +A + + P P +R + + +GRTS D S A+ LPLI PKCIE GCT G+ GM++C C G LHR CG D++ D ++C C+ +GK R
Sbjct: 132 FKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLP-GVANFGFGPDSDSDA---TSDVGARAAPPPRSRRV---WAGIGRTSNDFSEANEPLPLIVSPKCIEPGCTNAGNMGMISCGRCHGDLHRGCGVSGGGNHDDECDSFVGQRCTPCAYPRRGKKR 380
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI) HSP 1 Score: 120 bits (300), Expect = 3.220e-26 Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 2 Query: 638 LSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPL--DADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTL-----IDEDDDDCTDRQCNKCSSAGKGKGR 1114
+S AK CSH+RL ++G MD RE + R++AA R + P G V +P+ D+D++++A ++ T+ P P A R LGR ADTSAASA+LP+I P CIE C G+ MV+C C+G +HR CG L D + +D +C+ C++A KGK R
Sbjct: 139 ISPSRAKACSHSRLTLEGEMDAAREKIVRDLAAARGA-PSGVVNFPVGPDSDNEDDAGHRNSSDNTRSTPRPTAL----RHGDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKR 299
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI) HSP 1 Score: 110 bits (275), Expect = 3.250e-22 Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 Query: 350 AFSYTQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAK 658
+F ++ + + VSP+ W INDGE PSHTW P+SA M A ADA + ++P LFTRK Y+LFFSGG GR ++S WDY DREF E++VD+AK
Sbjct: 210 SFDLSRSTPRGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAK 312
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: A0A6H5JMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG5_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 2.210e-11 Identity = 58/156 (37.18%), Postives = 68/156 (43.59%), Query Frame = 2 Query: 389 VSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLAR 856
VS L W I G PS T PS M ADA + +TP LF RKH Y LFFSGG EFE ++ D+AK CSH R+ ++G +D R A E A R S GAV SD E + A PD AR
Sbjct: 162 VSILQLMTWYIQPGLGMPSPTCVTPSGGWPMCPMRADAYMIALMTPELFPRKHCYSLFFSGGAG---------------EFEGMTHDQAKECSHKRMLLEGRLDQARAKAALEKVAARLST--GAVPGLCQDSSDSEG---EQAVEQSRRPDQPAR 297 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.548.1 >prot_C-linearis_contig10.548.1 ID=prot_C-linearis_contig10.548.1|Name=mRNA_C-linearis_contig10.548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=250bp MKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTback to top mRNA from alignment at C-linearis_contig10:2231330..2233586+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.548.1 ID=mRNA_C-linearis_contig10.548.1|Name=mRNA_C-linearis_contig10.548.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2257bp|location=Sequence derived from alignment at C-linearis_contig10:2231330..2233586+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2231330..2233586+ >mRNA_C-linearis_contig10.548.1 ID=mRNA_C-linearis_contig10.548.1|Name=mRNA_C-linearis_contig10.548.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at C-linearis_contig10:2231330..2233586+ (Chordaria linearis ClinC8C monoicous)back to top |