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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2260 |
| Cds size | 1365 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927323.0815728-UTR-C-linearis_contig10:2165897..2166034 | 1622927323.0815728-UTR-C-linearis_contig10:2165897..2166034 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2165898..2166034 + |
| 1690879626.2159715-UTR-C-linearis_contig10:2165897..2166034 | 1690879626.2159715-UTR-C-linearis_contig10:2165897..2166034 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2165898..2166034 + |
| 1622927323.320533-UTR-C-linearis_contig10:2169828..2170586 | 1622927323.320533-UTR-C-linearis_contig10:2169828..2170586 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2169829..2170586 + |
| 1690879626.2796357-UTR-C-linearis_contig10:2169828..2170586 | 1690879626.2796357-UTR-C-linearis_contig10:2169828..2170586 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 2169829..2170586 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927323.0937815-CDS-C-linearis_contig10:2166034..2166130 | 1622927323.0937815-CDS-C-linearis_contig10:2166034..2166130 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2166035..2166130 + |
| 1690879626.2277713-CDS-C-linearis_contig10:2166034..2166130 | 1690879626.2277713-CDS-C-linearis_contig10:2166034..2166130 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2166035..2166130 + |
| 1622927323.1031601-CDS-C-linearis_contig10:2166619..2167342 | 1622927323.1031601-CDS-C-linearis_contig10:2166619..2167342 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2166620..2167342 + |
| 1690879626.2397285-CDS-C-linearis_contig10:2166619..2167342 | 1690879626.2397285-CDS-C-linearis_contig10:2166619..2167342 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2166620..2167342 + |
| 1622927323.1120868-CDS-C-linearis_contig10:2168003..2168243 | 1622927323.1120868-CDS-C-linearis_contig10:2168003..2168243 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2168004..2168243 + |
| 1690879626.2476892-CDS-C-linearis_contig10:2168003..2168243 | 1690879626.2476892-CDS-C-linearis_contig10:2168003..2168243 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2168004..2168243 + |
| 1622927323.12108-CDS-C-linearis_contig10:2168951..2169188 | 1622927323.12108-CDS-C-linearis_contig10:2168951..2169188 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2168952..2169188 + |
| 1690879626.2633512-CDS-C-linearis_contig10:2168951..2169188 | 1690879626.2633512-CDS-C-linearis_contig10:2168951..2169188 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2168952..2169188 + |
| 1622927323.1316016-CDS-C-linearis_contig10:2169759..2169828 | 1622927323.1316016-CDS-C-linearis_contig10:2169759..2169828 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2169760..2169828 + |
| 1690879626.2713778-CDS-C-linearis_contig10:2169759..2169828 | 1690879626.2713778-CDS-C-linearis_contig10:2169759..2169828 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2169760..2169828 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.546.1 >prot_C-linearis_contig10.546.1 ID=prot_C-linearis_contig10.546.1|Name=mRNA_C-linearis_contig10.546.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=455bp
MSSRIMKSRSKKGLFSGLSFKQPSKAKPEATPTSGDQQALHVADTCTAGG
ESSSAAAVASSASAVPIPKQPFVVVSGMASLSGDVPRAGTEGGGDSAQPD
GADAPEMEAEGLSAEPDTTKGDTATKAPDTPSAAARAIDLDLVPGEVLRV
GVARSRSLSGDDSAATCSVTGGGSAPAKAAGVPGSPLLRDFAADSTAKAN
GGIAKAPDTSPRGHKKDNNGIVGTKNPSDLAGGVAIKANDSVAKAPGMSS
PGDEKFEEGIVGAKDPSKEATIKAPSGKNLYVVISGYAKDNTGSGKAGVA
PAGRQAEARPETQADGIGIVGEDAGTPPPLEAKKRPKKGLFGGIFGSSKA
LSKPEVPGDGAASEARGSPLVSSKCDGSQPVSDLSVDMWGTTPAIDRRVR
ELGRTAVPLPRKATLKTPSGETNKPNTVRKDELSGAGFPEDGSSSAKVGT
PYSE* back to topmRNA from alignment at C-linearis_contig10:2165898..2170586+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.546.1 ID=mRNA_C-linearis_contig10.546.1|Name=mRNA_C-linearis_contig10.546.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4689bp|location=Sequence derived from alignment at C-linearis_contig10:2165898..2170586+ (Chordaria linearis ClinC8C monoicous)
TTTATCCATTCTCACCTTCCACCCCCAACTCTCCTTACTCCCTACATCCT
GTATTCCAGCTCTCGCAGGAGACTGCGCGTTCGCGGCGTTTTTTTTACAC
CGCATCTCTCCCGCCCCGCGGTTATCCTTGATCAAGGATGTCGTCAAGGA
TCATGAAATCGAGGTCGAAGAAGGGGCTCTTCAGCGGCCTATCGTTCAAG
CAGCCGTCCAAGGCAAAGCCTGAAGCAACGCCCGTGAGTTGGTGTACAGC
AAAGTGTAGCGCAGACAAGGGTATGCCGCCCCTAAAAATAACTGCAACAA
GGCTACACTCAAAATAATACGGAGTGGTAGGATCTAAGATTTACGCTCCA
TCCACTTGCTCTATCTTGTGCGGTATTGCACAACGAAAGGTGGTGTGAGA
AAGGGTTTCGACGTTGCAACTCGTGGCACGTTCGCCTTAGTTTCGGGCGG
GGGGGGTGCCAGCTAGACGGACTTGTCTCGCATCCACCTCCTCACCTGTC
AGTTCCCACATTTGTCCCAGGAGTTGATCTTGCAAGAAAGTGCCGGGTGC
CCACCACATTGATTGCACGAACGAAAGCACGGGAGGCCTTTCCCTGCCAA
CGGTGGCAACGTTTAGACTCCACGGCATCACAGTTGTCTAGAAGCGTGCC
CACTCAGGTAATTACCCCCCCAACCCTCCGTGATTTTCGTGACCCTTGAC
ACATGCCGTCGATTCCGCCAAGACGTCGGGAGACCAGCAGGCACTACACG
TCGCCGACACATGTACGGCGGGCGGCGAGTCGTCGTCGGCGGCGGCAGTG
GCGTCGTCAGCATCAGCGGTGCCCATTCCCAAGCAGCCGTTCGTCGTGGT
ATCGGGCATGGCAAGTTTATCGGGCGACGTACCACGGGCGGGCACGGAGG
GCGGCGGCGACTCGGCACAACCAGACGGCGCGGACGCCCCCGAGATGGAA
GCGGAGGGCCTCTCGGCTGAACCAGACACGACGAAAGGAGATACGGCCAC
CAAGGCGCCGGACACGCCGTCAGCAGCTGCGCGCGCGATAGATCTCGACC
TGGTCCCGGGGGAAGTGCTGCGCGTCGGTGTGGCCAGAAGCAGGAGCTTG
TCTGGTGACGACTCCGCCGCTACATGTAGCGTCACCGGCGGTGGCTCGGC
ACCGGCGAAAGCGGCGGGTGTTCCCGGGTCGCCGCTACTCCGAGACTTCG
CGGCGGACTCGACAGCCAAGGCGAACGGTGGCATTGCCAAGGCTCCGGAC
ACGTCGCCACGGGGGCACAAGAAGGACAATAACGGTATCGTCGGCACCAA
GAATCCGTCGGACCTAGCGGGGGGCGTGGCAATCAAAGCAAATGACAGCG
TCGCCAAGGCTCCGGGCATGTCGTCACCGGGGGACGAGAAGTTCGAAGAG
GGTATCGTCGGCGCCAAGGATCCGTCGAAGGAGGCGACGATCAAGGTGAG
CCCAGCGGCGAAACCCGTGAGACCCTGCTGTTGCTGCTGCTGCTGATGTA
GACGTATGGTATACATAGAAGTGTAGGGGTTTCCTTGTGCTCGTATTCGA
GTTGCTTTCTGCCGAGGTCTGCACGTACGTCAACACTGCCTGTGCTTTGG
CGTCGAGATCGTTCCCAGAGTCACGGACTGCTGTTGCCACGGACCGAAGA
AAGCGTTAGCGTTTGCGACAGGCACGGTGCTGCTTCGTTTGCCCTTGCCT
GTGATAGATATTGGTCAAGCTTGAGACGAACGAGCGCATACCCGAAAAAG
AGATGCGAAGTATACGAAGTACCATGAATTTTGCCGTAGATTCCTGTTCT
TCGAACCCAAGGATTTTGCTTCGATCTCTCACACACGGAAGACGTTGGCA
ATGGTTTCTAGTACTGCAGGACTCGAAGTTTCACCATTTTCATTTATTTT
TATTGAAGTGGTCACCCTGCTTCTCAGTGTGCAGTACATAGATGGCAGTA
CATCGTGTTTGGAACTTATCTGTCCGTTCTCGCAGGTAGGCCTGTTCTGC
GAATTCTACTTGATAGCCTTCTACGCGCGCGAACGTTGCGTACCGCTGAA
AACCACGTCTTGTCCCCGTCCCCCACGCGTTGTCGTTTTTTGTTTTTGCC
ACCCAGGCCCCGTCAGGTAAAAATCTATACGTTGTGATATCTGGCTACGC
AAAAGACAACACCGGCAGCGGTAAAGCCGGCGTAGCACCGGCGGGGAGGC
AGGCAGAAGCTAGACCCGAGACTCAAGCTGACGGTATCGGCATTGTCGGA
GAGGATGCGGGCACGCCACCGCCGCTGGAGGCCAAGAAGCGGCCGAAGAA
GGGACTCTTCGGCGGTATCTTCGGCTCCAGCAAGGCATTGTCGAAGGTAT
GTAGGCTATTATAGCACCGCTGTTGCTCTTCCGAGCTGACGACTGCTTTG
CTTGTCGATGGCGATTCTTACGCGAGTTTCGCAGTTACAGCCTTTGTTGC
CCATCCCTTGGCTCGTGCACTGCTGTGTCATCTCAGACGTATGTGCCATT
CTTCTCCGTATGACCTAGGGTGCTGTTGCGTCGAGCGCATCTAGCCAAAG
CTTTTCTCGGCAAACTTGGTTTGTTTTTGAAGCTCAGAACGAACCAGCCA
GAAAAATCAGTTATTTACAGCACTTAGTTACAGCTACAGCAGTAGTTAGG
GCCGTTTTAACCGCTCGCTGCGCCTTTTCTTCCAAATTTCCAAATTTAGC
ACTCGGAAAAAACACAAAACGGCGATTTGCCCCGCCCAGATGGGAAGATC
CAATTTGGAAGGTGTCCAAAATTTGGAAAGAAGTTGGAGCCGAAACAATT
GGAGCGGTCGCTTCCAAATTTTTGGAAGTTTTCCAAATTCCAAATTCGGA
AATTTGGAAATTTGAAATTTGGAGCGAAAAAGGGCTGTGTTTAAAACGGC
CCTTAGAGAAAGTCAATGTTAGTTTCTTTCCACCCACCCACTCACACATG
CATGCATGCCATGTCGTCTCGACGCAAAGCAACAGCAACAGCAACTGCTG
TGTGCCCTCTTCGGCTTGTGCCACGATTTCCGGTGCTGACATGACATTCC
CCAGCCCGAGGTGCCTGGTGACGGGGCCGCATCCGAGGCGCGGGGCTCGC
CGCTCGTCTCGTCGAAATGCGATGGCTCTCAGCCCGTGAGCGACCTGTCC
GTGGACATGTGGGGGACCACGCCAGCGATAGATCGACGGGTGCGGGAGCT
CGGGCGGACCGCCGTGCCCCTGCCGCGAAAAGCCACGTTGAAAACGCCTT
CAGGGGAGACAAATAAGCCTAATACTGTGAGAAAAGATGAAGCCTGAGGC
AAAGTTAAAGCCCGGTGTTTTGGTGCGACCTCTGGTCTTGTCGATCGGCC
GGTTCGATTGTCTCACCCGCTGCTAAGTAAGTCTTCCCCCTTCCCCCCCC
GGCGAAATCGCAGCAGCGACGCATCTGCGGTAGCGCCGTGTCGTGTTTGC
TCTAAGTGTATACTTGAAGTAATGCGTTCGCCAAAGCGGTTGGCACTACA
CCAAGCGTCTACGGACCTATGGGAGGTCGATAGGTACCTGGTGTGGAGGA
GTAGGGTGGTGGTCGGAATGGGTGCACTCGCTGCGGGTGACTTGGGGGCG
TCCGGTGGAAATGATACCGGCATCGATCTGTTGGGCGACAAGTCAGACGC
TTGAACACCCGTCGGGCACGACGGTGCAGGGTACAGTCTTTTCTGGATCA
CCACAGGGCAGCAGCAGTACATGAGTTCGCGTTGGCAAGGCGCATACAGC
AAGAAGCATCCCATCTCATTCCGACGCCTGCCTCCGTTCTTGCCATGCTT
TCGTCCCGCGCCTTTGCCCCTGCTACCCGAAATAAACGCGCTACCACACG
CAGCAGGTTCAGCTCTCTGGCGCCGGTTTTCCCGAGGATGGGTCTTCCTC
TGCGAAAGTGGGCACGCCTTATTCCGAGTAGGTGCCCGGCGTTGCCGATT
CGCTGCCACTGTCGTCTGCTATTTCCGCAAGCAAGCGCTTCTTCTCCCGG
GAAATAAACCACACGAAAGCCGAACAGCCAACGGCTACTACTGCCTGTGC
TCTACGCAGCCGAATGAGAACAGCAAGCCTTCGTTAGCCGTCATACGTAC
CCCCGAAGAGCATTTTCATGTTTTTGGACGACAAAGGGAACCGACTGGAC
GAAGGGTTGTTGACGTCTGCTTGCGGCTTGGGAAAAACCACCCGCATCAT
GCATACGAGGCGCCAGCCGACTGGAAAGAAAACTCGCGCGTAAATGTTGC
AGACTCCAACCCATGGGCTCAACAATTCCTGTTCCTGAAGTTAAGTGAGG
ACCGTACATACCTGTAGTCTTGAGACCCAGAAAAAAACGGGTTGGCATCT
ACGTACGTACGTGCAGATGAATGGAGTGCTGATTTCGCAGTATCTGCTGG
CCTGCCTCCCCCCCCAACGCCTTGCCAGACTGCCGGTACAGTTGTGTCAA
AGCGTTGTCAGAAACGGTGGTGAGGAGGCTTTGAAACCTCTGGAGCGCGC
AGGGCAAACAGCAGAAAATAGTATACAGAGTAGTGAAGCTGTCAACGGGT
GTGCTTGGTCTGGACGTACACACCAATAAATAATCGTAGCTGAATTTTGA
AAGTAAGAGTTTTGTGTTGGTGGACGAAGAGGTAGTTTGATTTTGACATG
TCAAAAATATTTACAAAATGAAGAAGACCATGACCACCC back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2165898..2170586+ >mRNA_C-linearis_contig10.546.1 ID=mRNA_C-linearis_contig10.546.1|Name=mRNA_C-linearis_contig10.546.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2730bp|location=Sequence derived from alignment at C-linearis_contig10:2165898..2170586+ (Chordaria linearis ClinC8C monoicous)
ATGTCGTCAAGGATCATGAAATCGAGGTCGAAGAAGGGGCTCTTCAGCGG
CCTATCGTTCAAGCAGCCGTCCAAGGCAAAGCCTGAAGCAACGCCCATGT
CGTCAAGGATCATGAAATCGAGGTCGAAGAAGGGGCTCTTCAGCGGCCTA
TCGTTCAAGCAGCCGTCCAAGGCAAAGCCTGAAGCAACGCCCACGTCGGG
AGACCAGCAGGCACTACACGTCGCCGACACATGTACGGCGGGCGGCGAGT
CGTCGTCGGCGGCGGCAGTGGCGTCGTCAGCATCAGCGGTGCCCATTCCC
AAGCAGCCGTTCGTCGTGGTATCGGGCATGGCAAGTTTATCGGGCGACGT
ACCACGGGCGGGCACGGAGGGCGGCGGCGACTCGGCACAACCAGACGGCG
CGGACGCCCCCGAGATGGAAGCGGAGGGCCTCTCGGCTGAACCAGACACG
ACGAAAGGAGATACGGCCACCAAGGCGCCGGACACGCCGTCAGCAGCTGC
GCGCGCGATAGATCTCGACCTGGTCCCGGGGGAAGTGCTGCGCGTCGGTG
TGGCCAGAAGCAGGAGCTTGTCTGGTGACGACTCCGCCGCTACATGTAGC
GTCACCGGCGGTGGCTCGGCACCGGCGAAAGCGGCGGGTGTTCCCGGGTC
GCCGCTACTCCGAGACTTCGCGGCGGACTCGACAGCCAAGGCGAACGGTG
GCATTGCCAAGGCTCCGGACACGTCGCCACGGGGGCACAAGAAGGACAAT
AACGGTATCGTCGGCACCAAGAATCCGTCGGACCTAGCGGGGGGCGTGGC
AATCAAAGCAAATGACAGCGTCGCCAAGGCTCCGGGCATGTCGTCACCGG
GGGACGAGAAGTTCGAAGAGGGTATCGTCGGCGCCAAGGATCCGTCGAAG
GAGGCGACGATCAAGACGTCGGGAGACCAGCAGGCACTACACGTCGCCGA
CACATGTACGGCGGGCGGCGAGTCGTCGTCGGCGGCGGCAGTGGCGTCGT
CAGCATCAGCGGTGCCCATTCCCAAGCAGCCGTTCGTCGTGGTATCGGGC
ATGGCAAGTTTATCGGGCGACGTACCACGGGCGGGCACGGAGGGCGGCGG
CGACTCGGCACAACCAGACGGCGCGGACGCCCCCGAGATGGAAGCGGAGG
GCCTCTCGGCTGAACCAGACACGACGAAAGGAGATACGGCCACCAAGGCG
CCGGACACGCCGTCAGCAGCTGCGCGCGCGATAGATCTCGACCTGGTCCC
GGGGGAAGTGCTGCGCGTCGGTGTGGCCAGAAGCAGGAGCTTGTCTGGTG
ACGACTCCGCCGCTACATGTAGCGTCACCGGCGGTGGCTCGGCACCGGCG
AAAGCGGCGGGTGTTCCCGGGTCGCCGCTACTCCGAGACTTCGCGGCGGA
CTCGACAGCCAAGGCGAACGGTGGCATTGCCAAGGCTCCGGACACGTCGC
CACGGGGGCACAAGAAGGACAATAACGGTATCGTCGGCACCAAGAATCCG
TCGGACCTAGCGGGGGGCGTGGCAATCAAAGCAAATGACAGCGTCGCCAA
GGCTCCGGGCATGTCGTCACCGGGGGACGAGAAGTTCGAAGAGGGTATCG
TCGGCGCCAAGGATCCGTCGAAGGAGGCGACGATCAAGGCCCCGTCAGGT
AAAAATCTATACGTTGTGATATCTGGCTACGCAAAAGACAACACCGGCAG
CGGTAAAGCCGGCGTAGCACCGGCGGGGAGGCAGGCAGAAGCTAGACCCG
AGACTCAAGCTGACGGTATCGGCATTGTCGGAGAGGATGCGGGCACGCCA
CCGCCGCTGGAGGCCAAGAAGCGGCCGAAGAAGGGACTCTTCGGCGGTAT
CTTCGGCTCCAGCAAGGCATTGTCGAAGGCCCCGTCAGGTAAAAATCTAT
ACGTTGTGATATCTGGCTACGCAAAAGACAACACCGGCAGCGGTAAAGCC
GGCGTAGCACCGGCGGGGAGGCAGGCAGAAGCTAGACCCGAGACTCAAGC
TGACGGTATCGGCATTGTCGGAGAGGATGCGGGCACGCCACCGCCGCTGG
AGGCCAAGAAGCGGCCGAAGAAGGGACTCTTCGGCGGTATCTTCGGCTCC
AGCAAGGCATTGTCGAAGCCCGAGGTGCCTGGTGACGGGGCCGCATCCGA
GGCGCGGGGCTCGCCGCTCGTCTCGTCGAAATGCGATGGCTCTCAGCCCG
TGAGCGACCTGTCCGTGGACATGTGGGGGACCACGCCAGCGATAGATCGA
CGGGTGCGGGAGCTCGGGCGGACCGCCGTGCCCCTGCCGCGAAAAGCCAC
GTTGAAAACGCCTTCAGGGGAGACAAATAAGCCTAATACTGTGAGAAAAG
ATGAACCCGAGGTGCCTGGTGACGGGGCCGCATCCGAGGCGCGGGGCTCG
CCGCTCGTCTCGTCGAAATGCGATGGCTCTCAGCCCGTGAGCGACCTGTC
CGTGGACATGTGGGGGACCACGCCAGCGATAGATCGACGGGTGCGGGAGC
TCGGGCGGACCGCCGTGCCCCTGCCGCGAAAAGCCACGTTGAAAACGCCT
TCAGGGGAGACAAATAAGCCTAATACTGTGAGAAAAGATGAACTCTCTGG
CGCCGGTTTTCCCGAGGATGGGTCTTCCTCTGCGAAAGTGGGCACGCCTT
ATTCCGAGTAGCTCTCTGGCGCCGGTTTTCCCGAGGATGGGTCTTCCTCT
GCGAAAGTGGGCACGCCTTATTCCGAGTAG back to top
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