mRNA_C-linearis_contig10.541.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.541.1
Unique NamemRNA_C-linearis_contig10.541.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2085592..2087276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size909
Cds size909
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927339.7821128-CDS-C-linearis_contig10:2085591..20859061622927339.7821128-CDS-C-linearis_contig10:2085591..2085906Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2085592..2085906 +
1690879637.0862617-CDS-C-linearis_contig10:2085591..20859061690879637.0862617-CDS-C-linearis_contig10:2085591..2085906Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2085592..2085906 +
1622927339.792106-CDS-C-linearis_contig10:2086682..20872761622927339.792106-CDS-C-linearis_contig10:2086682..2087276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2086683..2087276 +
1690879637.096255-CDS-C-linearis_contig10:2086682..20872761690879637.096255-CDS-C-linearis_contig10:2086682..2087276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2086683..2087276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.541.1prot_C-linearis_contig10.541.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2085592..2087276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.541.1

>prot_C-linearis_contig10.541.1 ID=prot_C-linearis_contig10.541.1|Name=mRNA_C-linearis_contig10.541.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=303bp
MAYSIGTMLSGPGDQTQQQQRHDVSPRKRRLYELIISGFEQLLSQQGRIH
ADGRGAGYVVWIPRREQYKQQLQQEAWDGEAEGEEGEDESPLVVLYGGGY
DGLFSGGLEQALDCCDCLSAPLRLVRIPVELLPPPAHSPPRSSSAKQEAS
IAALSSSARPLEESAEYNSRGPFSPAPLSSRHKEKEEKKKKKQFGFVGVT
PEPDSGWGVSRKRPGPGGVGGGRGGDENCPERGRSGRGGARDDGLGREGG
CGWEGCTEGDDDPREEGAAVAAPRNGSVVGEASAGKQFQQREMLDLWWLT
GE*
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mRNA from alignment at C-linearis_contig10:2085592..2087276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.541.1 ID=mRNA_C-linearis_contig10.541.1|Name=mRNA_C-linearis_contig10.541.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1685bp|location=Sequence derived from alignment at C-linearis_contig10:2085592..2087276+ (Chordaria linearis ClinC8C monoicous)
ATGGCGTACAGCATAGGGACTATGCTGTCGGGCCCTGGCGACCAGACCCA
GCAACAGCAACGGCACGACGTCTCGCCACGAAAGCGCCGGTTGTATGAAC
TCATCATCAGCGGGTTCGAGCAATTACTCTCGCAGCAGGGGCGCATACAC
GCCGACGGGCGTGGGGCGGGGTACGTTGTATGGATCCCGCGCAGAGAGCA
ATACAAGCAGCAGCTGCAGCAGGAGGCATGGGATGGAGAGGCAGAGGGAG
AGGAGGGGGAAGATGAGAGTCCGCTTGTTGTGCTGTACGGTGGTGGTTAC
GATGGCCTGTTTTCGGTGAGAGTATAATATGCTGTGTCTTAAGACAGAAA
ACAAATAAATCATGATGCGGTAGAGAGAGAAAAGGTTTTGTGGCACGAAT
GTATCGCTGATAAACTATATAGCTCTTTGCGGGGTGGGATGTACGAGTTC
CTGTCGGTCGTGCACAGAACCAACCACATCTTGCGCAGGGATACATATAC
TTCGAAGTATATGTAGACGATCTCCATGTCGAATTCGTAGAATAGTCTAC
GGGTTCACACGATCCACGGTAGAAGAGCGGCAATAAAGGACCAATACCAA
TCTCAATTGGTGAGTTCGTGGCTCCTGGCGAAATCCACGCTCGCAAACGA
CCGTTTGAGTGGTGCGCCGTCGACCGATGAAGTATTTTGCTTTGCAAGAT
GTCACACATGGCTGACTGGGCATGCCGCAAACACCCATGTCGTCTTGGTG
GTGGATGTACAATTGCAAGTGTGAACAGGGAGAGCCGTAGATTTGGCGGC
TCTGGTTCGAGCCGGCCGGAGGATAGCCTCGTTTCCGACAAGCTACATGG
TGCAAGAAAAGTCTATCACGCTGTCAGTAGTGCCTCCACCGTCGTATTTT
TTTGCGCTACTGTATGTACCACCAATTGCCTCGGACTTGAGGAACGGGGT
CGCCAGTCGTACCACAATACACTCAACGCTTTGGTTCAGACGGGTACGCT
TCGAAATACATCTGTCGCGACTCCTCAAGACCTTCGCGACCGAGTTTCAC
CCCCCCCCCGCTCCCTTCCCATTTCCCCAACAACCCAAAAGGGCGGGCTC
GAGCAAGCCCTCGACTGCTGCGACTGCCTCTCCGCCCCGCTCCGATTGGT
GAGAATCCCGGTGGAGCTCCTGCCGCCGCCGGCGCATTCCCCCCCGCGAA
GCTCTTCCGCCAAGCAAGAAGCCTCAATCGCCGCCCTATCTTCGTCGGCC
AGACCACTCGAAGAAAGCGCCGAGTATAATTCGCGCGGTCCTTTTTCTCC
TGCTCCGCTCTCAAGCCGACACAAGGAGAAGGAGGAGAAGAAGAAGAAGA
AGCAGTTCGGGTTCGTGGGGGTGACGCCGGAACCCGACAGTGGTTGGGGC
GTGTCCAGAAAAAGGCCTGGGCCTGGTGGCGTCGGAGGAGGACGAGGCGG
GGACGAGAACTGTCCAGAGCGCGGAAGAAGCGGAAGAGGCGGCGCGAGGG
ACGACGGCCTAGGTCGCGAGGGGGGTTGTGGGTGGGAAGGTTGTACCGAG
GGGGACGATGATCCGAGAGAAGAAGGGGCGGCGGTGGCGGCGCCTAGGAA
TGGGAGTGTTGTCGGGGAGGCGAGCGCGGGGAAGCAGTTTCAGCAGCGCG
AGATGTTGGACCTCTGGTGGTTGACAGGCGAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2085592..2087276+

>mRNA_C-linearis_contig10.541.1 ID=mRNA_C-linearis_contig10.541.1|Name=mRNA_C-linearis_contig10.541.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at C-linearis_contig10:2085592..2087276+ (Chordaria linearis ClinC8C monoicous)
ATGGCGTACAGCATAGGGACTATGCTGTCGGGCCCTGGCGACCAGACCCA
GCAACAGCAACGGCACGACGTCTCGCCACGAAAGCGCCGGTTGTATGAAC
TCATCATCAGCGGGTTCGAGCAATTACTCTCGCAGCAGGGGCGCATACAC
GCCGACGGGCGTGGGGCGGGGTACGTTGTATGGATCCCGCGCAGAGAGCA
ATACAAGCAGCAGCTGCAGCAGGAGGCATGGGATGGAGAGGCAGAGGGAG
AGGAGGGGGAAGATGAGAGTCCGCTTGTTGTGCTGTACGGTGGTGGTTAC
GATGGCCTGTTTTCGATGGCGTACAGCATAGGGACTATGCTGTCGGGCCC
TGGCGACCAGACCCAGCAACAGCAACGGCACGACGTCTCGCCACGAAAGC
GCCGGTTGTATGAACTCATCATCAGCGGGTTCGAGCAATTACTCTCGCAG
CAGGGGCGCATACACGCCGACGGGCGTGGGGCGGGGTACGTTGTATGGAT
CCCGCGCAGAGAGCAATACAAGCAGCAGCTGCAGCAGGAGGCATGGGATG
GAGAGGCAGAGGGAGAGGAGGGGGAAGATGAGAGTCCGCTTGTTGTGCTG
TACGGTGGTGGTTACGATGGCCTGTTTTCGGGCGGGCTCGAGCAAGCCCT
CGACTGCTGCGACTGCCTCTCCGCCCCGCTCCGATTGGTGAGAATCCCGG
TGGAGCTCCTGCCGCCGCCGGCGCATTCCCCCCCGCGAAGCTCTTCCGCC
AAGCAAGAAGCCTCAATCGCCGCCCTATCTTCGTCGGCCAGACCACTCGA
AGAAAGCGCCGAGTATAATTCGCGCGGTCCTTTTTCTCCTGCTCCGCTCT
CAAGCCGACACAAGGAGAAGGAGGAGAAGAAGAAGAAGAAGCAGTTCGGG
TTCGTGGGGGTGACGCCGGAACCCGACAGTGGTTGGGGCGTGTCCAGAAA
AAGGCCTGGGCCTGGTGGCGTCGGAGGAGGACGAGGCGGGGACGAGAACT
GTCCAGAGCGCGGAAGAAGCGGAAGAGGCGGCGCGAGGGACGACGGCCTA
GGTCGCGAGGGGGGTTGTGGGTGGGAAGGTTGTACCGAGGGGGACGATGA
TCCGAGAGAAGAAGGGGCGGCGGTGGCGGCGCCTAGGAATGGGAGTGTTG
TCGGGGAGGCGAGCGCGGGGAAGCAGTTTCAGCAGCGCGAGATGTTGGAC
CTCTGGTGGTTGACAGGCGAGTAGGGCGGGCTCGAGCAAGCCCTCGACTG
CTGCGACTGCCTCTCCGCCCCGCTCCGATTGGTGAGAATCCCGGTGGAGC
TCCTGCCGCCGCCGGCGCATTCCCCCCCGCGAAGCTCTTCCGCCAAGCAA
GAAGCCTCAATCGCCGCCCTATCTTCGTCGGCCAGACCACTCGAAGAAAG
CGCCGAGTATAATTCGCGCGGTCCTTTTTCTCCTGCTCCGCTCTCAAGCC
GACACAAGGAGAAGGAGGAGAAGAAGAAGAAGAAGCAGTTCGGGTTCGTG
GGGGTGACGCCGGAACCCGACAGTGGTTGGGGCGTGTCCAGAAAAAGGCC
TGGGCCTGGTGGCGTCGGAGGAGGACGAGGCGGGGACGAGAACTGTCCAG
AGCGCGGAAGAAGCGGAAGAGGCGGCGCGAGGGACGACGGCCTAGGTCGC
GAGGGGGGTTGTGGGTGGGAAGGTTGTACCGAGGGGGACGATGATCCGAG
AGAAGAAGGGGCGGCGGTGGCGGCGCCTAGGAATGGGAGTGTTGTCGGGG
AGGCGAGCGCGGGGAAGCAGTTTCAGCAGCGCGAGATGTTGGACCTCTGG
TGGTTGACAGGCGAGTAG
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