mRNA_C-linearis_contig10.540.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: D7FZV3_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV3_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 5.100e-164 Identity = 425/848 (50.12%), Postives = 493/848 (58.14%), Query Frame = 1
Query: 1 MSKKAGKKAKVKVLEIDPNSPAWMEEVARKQTEAYDMVQRAMTRSQIDAVLATRDDLMKQRAELETRARQQSEDQSEIYQYLRNKLKDNYVAIAELETKVSKAHDERLLQEKQLLATIRDLNVERESEKTRLEERLETLDVELTAIKEYQENSEIYQQALRDMEANIAGCKDAFSSEVVLMNQQLKEELETGRRDKEERRKLTKKAAAKATQEQLGPRTKIRIAQNKKMMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQKQRGRSAAT--------------------GASPGGVGXXXXXXXXXXXXXXXXXXXXXXGALYKLAGMSEEERQQMLDLREELRREEVGISAAQTLVAEIREALPRAGAERSRALALKIDLARVLASCHEDPSLGSD------VLANGSTADRHGRTRQA------RSEHHHTLNPAHGGGLESPPPAPALEPAN--VGSSDGISGASVAARDGAGHGGRPEGRGVS-GEGEERRCHGGSSGNAALLPAISAAGRPSFPPQPKEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAEVDRGADGTAGGDPQDTGHGPGERAKEPMGEGLVLWPESSILPPVAPPAEVPAGTTEGVEGGAAERGAGGAAPRYMDTDTLKAVARLFLSKLQVSVEAITPRPPISPKETTSFPALMPGVSPDGDGGPESALGINSGGTRHHPRSSKRGTRQRGRSSXXAKRKGTSSRGSVADHADYRKIRRGQRDHPSRGGRVGTSGSGGTRLLGDHRTVEGSRGGRRGRDQTGSRGWA-DDATS-WSDWHTTGIPSWDIL 2433
MSKKAGKKAKVKV EIDPNSP W+EEVARKQ+EAY MVQRAMTRSQI+ VL TRD+L+ QRAELET+A+QQS+DQS+IYQYLRNKLKDNYVAIAELE ++ RL E+L TLDVELTAIKEYQENS+IY+Q L+DMEA IAGCKDAF+ E+ L+N QL+EE ETGRRDKEERRK+TKKAAAKATQEQLGPRTK RIAQNKKMMSELRFQCFEVEKM+RARQGLM+SNT LLA++ASARHRVEELARRSHLLQRI+R MHQK + R A GASP G +Y+LAGMSEEERQQMLDLREELRREEV I+AAQTLV E+ E + RA ERSR LALK DLARVLA CHEDP +G++ + G + DR GR RS + L A+G L PA L ++ VGS++ SG + + GV GEG S + LLPAI R S PQ E + XXXXXXXXXXX RGADGT G D ++ G + M E L LWPE +I+P A P EG + +E +D + LKAVARL LSKLQ+SVEAITPR + FP+L + DG GG + G++ G R+S+RG R+ S+ A+R G + S RGQR RGG L GD SR G R R SR A DDATS WS WHTTGIPSWDIL
Sbjct: 1 MSKKAGKKAKVKVPEIDPNSPEWIEEVARKQSEAYGMVQRAMTRSQIEVVLTTRDNLVIQRAELETKAKQQSQDQSDIYQYLRNKLKDNYVAIAELEAQI------------------------------RLGEKLGTLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKAAAKATQEQLGPRTKHRIAQNKKMMSELRFQCFEVEKMYRARQGLMESNTLLLAKSASARHRVEELARRSHLLQRIIRYMHQKLQKRGACLDDGSIGPNSAPEDVDDCERPGASP------EIGGHAARAGRRSGSRGRHSGTVYRLAGMSEEERQQMLDLREELRREEVAIAAAQTLVGEMSENIRRAEEERSRRLALKGDLARVLALCHEDPLVGANGEKGLQTESGGKSFDRTGRLDPQPIPVPKRSTLLY-LQDANGSELL---PATLLHSSDLPVGSTNDGSGLA-------------DDHGVEMGEG---------SVSTVLLPAIGPT-RLSRQPQDWELENNEHDQQRVPQRXXXXXXXXXXXHEHMALEVPS-------------RGADGTEGDDAIESSRG---NRRGGMREKLALWPEFTIVPHTAGVGRPP---REGGDIAYSEERPWEGTTSCIDAEVLKAVARLLLSKLQISVEAITPRLASPRTQAVGFPSLTERATLDG-GGARAESGVDMGD--RQLRNSRRGPRRSRESTRTARRHGAGNGTSACSS-------RGQRRRDGRGGT----------LSGDQYEEGVSREGGRDRGVGRSRSGAPDDATSIWSGWHTTGIPSWDIL 746
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: A0A6H5L4N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N5_9PHAE) HSP 1 Score: 187 bits (475), Expect = 2.410e-46 Identity = 228/639 (35.68%), Postives = 281/639 (43.97%), Query Frame = 1
Query: 685 MMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQKQRGRSAAT--------------------GASPGGVGXXXXXXXXXXXXXXXXXXXXXXGALYKLAGMSEEERQQMLDLREELRREEVGISAAQTLVAEIREALPRAGAERSRAL-ALKIDL------------------ARVLASCHEDPSLGSD------VLANGSTADRHGRTRQARSEHHHT---LNPAHGGGLESPPPAPALEPANVGSSDGISGASVAARDGAGHGGRPEGRGVSGEGEERRCHGGSSGNAALLPAISAAGRPSFPPQPKEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAEVDRGADGTAGGDPQDTGHGPGERAKEPMGEGLVLWPESSILPPVAPPAEVPAGTTEGVEGGAAERGAGGAAPRYMDTDTLKAVARLFLSKLQVSVEAITPRPPISPKETTSFPALMPGVSPDGDGGPESALGINSGGTR-HHPRSSKRGTRQRGRSSXXAKRKGTSSRGSVADHADYRKIRRGQRDHPSRGGRVGTSGSGGTRLLGDHRTVEG-SRGGRRGRDQTGSRGWA-DDATS-WSDWHTTGIPSWDILEPSV 2445
MMSELRFQCFEVEKM+RARQGLM+SNT LLA++ASARHRVEELARRSHLLQRI+R MHQK + R A GASP G +Y+LAGMSEEERQQMLDLREE+ + + A +LP A R+ A A K D RVLA CHEDP +G++ + G DR GR + T L+P G E PP L +++ G+ +A GA GEG S + LLPAI R S PQ E + RGADGT G D + G G +E + E L LWPE +I+P +A P EG + +E +D + LKAVARL LSKLQ+SVEAITPR FP+L + G GG + G++ G + +PR+ R R R S R + G+ A ++ R+ RGGR GT L D + EG SR G R RD SR DDATS WS WH+TGIPSWDIL +
Sbjct: 1 MMSELRFQCFEVEKMYRARQGLMESNTLLLAKSASARHRVEELARRSHLLQRIIRYMHQKLQKRGACLDDGSIGRNSEHKDVDGCERPGASP------ETGVHAAGGGRRGGSRGRHRGTVYRLAGMSEEERQQMLDLREEVCSCKFFLRMILPRGAVHYGSLPNAIRRRANAFFAFKSDPFPLPSRWLNLRMRARSSPKRVLALCHEDPLVGANGERGLQTESGGKRFDRTGRLDPQPTPVPITSASLSPQDASGSELLPPT-LLHNSDLSMGSANDGSGLADNHGA----------EVGEG---------SVSTLLLPAIGPT-RLSRQPQDWELENNEHDQQRVPQRQLQQHQLQLNQHEHMALEVPS-------------RGADGTDGNDAIEPSRGNG---REGIREKLALWPEFTIVPHIAGVGRPP---REGGDIACSEERPWEGTNSCIDAEVLKAVARLLLSKLQISVEAITPRLAFPRTHAMDFPSLTKRATL-GSGGAGAESGVDMGNRQLRNPRTGPR----RSRESTRTARPYEAGNGNSACNS---------REQRRRGGRGGT--------LSDDQYEEGMSREGGRDRDVDRSRSRVPDDATSIWSGWHSTGIPSWDILVSEI 571
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: A0A836CFU2_9STRA (Cilia- and flagella-associated protein 157 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.400e-17 Identity = 75/261 (28.74%), Postives = 133/261 (50.96%), Query Frame = 1
Query: 82 ARKQTEAYDMVQRAMTRSQIDAVLATRDDLMKQRAELETRARQQSEDQSEIYQYLRNKLKDNYVAIAELETKVSKAHDERLLQEKQLLATIRDLNVERESEKTRLEERLETLDVELTAIKEYQENSEIYQQALRDMEANIAGCKDAFSSEVVLMNQQLKEELETGRRDKEERRKLTKKAAAKATQEQLGPRTKIRIAQNKKMMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQK 864
+++ + Y V R M SQ++ V A R + + EL+ + + ++ +S+I L+ K+ NY IA LE K+ + H R +E++L I + R SE+TR E R L+ LT +K + N + + ++ + C ++E + ++L+E E R+D ER ++A + +QLG + R+ +NK++ +EL FQC EV+++ L+ N L++ E LAR S LQ +R+MH +
Sbjct: 25 SQRNEKLYQHVVRCMLASQLETVCARRTQYLARLEELQVKVEEAAQGRSDIVAKLQEKVARNYDDIAVLEAKIEEEHVARQAEERRLQDVIAVIEAARTSERTRCEARRLELEATLTDLKGFLANKSTLESEIETLQRQLDECDSRHAAEKRELQERLEEAAEARRQDTLERISAARQAVVQQLGQQLGAQAMARVQENKRLATELHFQCMEVDRLSSVCSTLVHDNQSALSEMQLLAAEAETLARASTQLQASIRDMHSQ 285
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: A0A813GJU5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GJU5_POLGL) HSP 1 Score: 72.8 bits (177), Expect = 5.230e-9 Identity = 66/243 (27.16%), Postives = 130/243 (53.50%), Query Frame = 1
Query: 190 LETRARQQSEDQSEIYQYLRNKLKDNYVAIAELETKVSKAHDERLLQEKQLLATIRDLNVERESEKTRLEERLETLDV-------ELTAIKEYQENSEIYQQALRDMEANIAGCKDAFSSEVVLMNQQLKEELETGRRDKEERRKLTKKAAAKATQEQLGPRTKIRIAQNKKMMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQKQRGRSAATGAS 897
L+T+ QSE QS+I + L L++NY I + E ++ + E LL++++ +D + E E+ +L ++ L + +L ++E+Q N E + L +++ ++ +A + +V +++ +++ R+D + K T++ T++QL TK I +N++M +EL FQ E E++ Q LM+ N L + ELARR+H+ QR+++ M++K + +A+T S
Sbjct: 40 LQTQYTSQSETQSDILRTLHASLEENYGTIEKSEKEIQRL--ELLLEDQK-----QDFKDKLEEERAQLANQVAALQIANELLQDQLNQVREFQHNKETLEGDLANLKDKLSQQAEAHARDVSAFDRKKAIDIDQLRKDMQRNIKETREMLKARTKDQLDSTTKRTIMENEQMATELHFQSKETERLLDRNQALMEENVQLRRNLLIHKDLENELARRTHVYQRLLKKMNEKMKVDAASTDQS 275
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: A0A813I693_POLGL (Cilia- and flagella-associated protein 157 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I693_POLGL) HSP 1 Score: 62.8 bits (151), Expect = 3.130e-6 Identity = 57/221 (25.79%), Postives = 117/221 (52.94%), Query Frame = 1
Query: 256 LKDNYVAIAELETKVSKAHDERLLQEKQLLATIRDLNVERESEKTRLEERLETLDV-------ELTAIKEYQENSEIYQQALRDMEANIAGCKDAFSSEVVLMNQQLKEELETGRRDKEERRKLTKKAAAKATQEQLGPRTKIRIAQNKKMMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQKQRGRSAATGAS 897
L++NY I + E ++ + E LL++++ +D + E E+ +L ++ L + +L ++E+Q N E + L +++ ++ +A + +V +++ +++ R+D + K T++ T++QL TK I +N++M +EL FQ E E++ Q LM+ N L + ELARR+H+ QR+++ M++K + +A+T S
Sbjct: 6 LEENYGTIEKSEKEIQRL--ELLLEDQK-----QDFKDKLEEERAQLANQVAALQIANELLQDQLNQVREFQHNKETLEGDLANLKDKLSQQAEAHARDVSAFDRKKAIDIDQLRKDMQRNIKETREMLKARTKDQLDSTTKRTIMENEQMATELHFQSKETERLLDRNQALMEENVQLRRNLLIHKDLENELARRTHVYQRLLKKMNEKMKVDAASTDQS 219
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: A0A812I4R8_9DINO (Cry protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I4R8_9DINO) HSP 1 Score: 63.2 bits (152), Expect = 3.810e-6 Identity = 62/236 (26.27%), Postives = 122/236 (51.69%), Query Frame = 1
Query: 190 LETRARQQSEDQSEIYQYLRNKLKDNYVAIAELETKVSKAHDERLLQEKQLLATIRDLNVE-----RESEKTRLEERLETLDVELTAIKEYQENSEIYQQALRDMEANIAGCKDAFSSEVVLMNQQLKEELETGRRDKEERRKLTKKAAAKATQEQLGPRTKIRIAQNKKMMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQKQRGRSA 882
L+T+ Q E ++I + L + L+ NY I E + + + +L +KQ DL+ E +++ +L+ + E L+ +L ++E+Q + E ++ L ++ + K+ F+ ++ +++ +++ R+D ++ + + T+EQL TK I +N++M +EL FQ E EK+ Q L++ N L + ELARR+HL QR+++ M QK + +A
Sbjct: 441 LQTQYTSQYETNADILRTLHSNLEGNYATIERHERTIMEL-EHKLEDQKQQAKD--DLDTEMAKPMKDAVIAKLKTQKEELEGQLKEVREFQRDKENMEKELASLKQQLEDNKEDFARKMSDYDRKKAVDMDILRQDMVQKVQDANEMLKAKTKEQLDSTTKRTIMENEQMFTELHFQSKETEKLMERNQSLLEENAQLRRNLLIHKDLENELARRTHLYQRLLKKMDQKLKSEAA 673
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Match: A0A7S1L288_ALECA (Cilia- and flagella-associated protein 157 (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1L288_ALECA) HSP 1 Score: 60.5 bits (145), Expect = 1.720e-5 Identity = 55/227 (24.23%), Postives = 109/227 (48.02%), Query Frame = 1
Query: 190 LETRARQQSEDQSEIYQYLRNKLKDNYVAIAELETKVSKAHDERLLQEKQLLATIRDLNVERESEKTRLEERLETLDVELTAIKEYQENSEIYQQALRDMEANIAGCKDAFSSEVVLMNQQLKEELETGRRDKEERRKLTKKAAAKATQEQLGPRTKIRIAQNKKMMSELRFQCFEVEKMHRARQGLMKSNTHLLAQAASARHRVEELARRSHLLQRIVRNMHQKQR 870
L+T+ Q E QS+I + L L +NY I E E K+++ + + L++++E L+ +L ++E++ + L + + + + +V +++ E++ +RD + + T++ T++QL TK I +N++M +EL FQ E E++ Q L++ N L R ELARR+H+ Q++++ + Q+QR
Sbjct: 42 LQTQYTSQCETQSDILRTLHANLDENYSKIEESEAKIARLEQQLXXXXXXXXXXXXXXXXXXXXHVSGLQQQVEDLEGKLHELREFKRTKDSMDGELASLRRRLEEQAEEHTRDVSAHDRKKAVEIDQLKRDMQRSIRETREMLKAKTKDQLDSTTKRTIMENEQMATELHFQSRETERLLERNQSLLRENAQLRRNLLIHRDLENELARRTHVYQKLLKRVDQRQR 268 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.540.1 >prot_C-linearis_contig10.540.1 ID=prot_C-linearis_contig10.540.1|Name=mRNA_C-linearis_contig10.540.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1331bp MSKKAGKKAKVKVLEIDPNSPAWMEEVARKQTEAYDMVQRAMTRSQIDAVback to top mRNA from alignment at C-linearis_contig10:2075583..2084609+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.540.1 ID=mRNA_C-linearis_contig10.540.1|Name=mRNA_C-linearis_contig10.540.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9027bp|location=Sequence derived from alignment at C-linearis_contig10:2075583..2084609+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2075583..2084609+ >mRNA_C-linearis_contig10.540.1 ID=mRNA_C-linearis_contig10.540.1|Name=mRNA_C-linearis_contig10.540.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7986bp|location=Sequence derived from alignment at C-linearis_contig10:2075583..2084609+ (Chordaria linearis ClinC8C monoicous)back to top |