Homology
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match:
A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)
HSP 1 Score: 147 bits (371), Expect = 2.830e-36
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = -1
Query: 483 RMDSAALPLIVTPPPRRIRVVFSAESGCIPSCNPALCQRWAFIPPNLKVVGDLAHHLARQLKQQ-GKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTLTRGEVD 797
+MD+ ALP V PRRIRVVF A++GC+PS NP L +RW FIPP L V+GDLAHHL RQLK++ G+K+R SSLVL+LDGFVLPP ESLD+LRETDVVTLT + D
Sbjct: 53 KMDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLRQSD 158
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match:
A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)
HSP 1 Score: 59.7 bits (143), Expect = 6.170e-8
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = -1
Query: 507 IVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVV 770
+ TPP + R+R+VF + S + +R W +PP L V DLA H+A + + ++S S ++LS+DGFVLPP ES I R+ D++
Sbjct: 1 MATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRL--RRSCPSCVILSIDGFVLPPFESTCIFRDNDII 89
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match:
B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)
HSP 1 Score: 61.2 bits (147), Expect = 6.730e-7
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = -1
Query: 501 PLIVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 776
P + TPP + R+R+VF + S + +R W +PP L V DLA H+A + + ++S S ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 131 PPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRL--RRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRV 223
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match:
A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)
HSP 1 Score: 60.1 bits (144), Expect = 1.540e-6
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = -1
Query: 501 IVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 770
+ TPP + R+R+VF + S + +R W +PP L V DLA H+A + + ++S S ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 1 MATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRL--RRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRV 91
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match:
A0A6G1BQ98_9ORYZ (Coilin n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BQ98_9ORYZ)
HSP 1 Score: 55.8 bits (133), Expect = 3.770e-5
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = -1
Query: 501 IVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 770
+ TPP + R+R+VF + S + +R W +PP L V DLA H+A + + + S ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 1 MATPPAQVVRLRLVFDNQRLLRRSQRESGLRRCWLLLPPELATVADLAAHIAARFRL--RYSCPGCVILSIDGFVLPPFESTCIFRDNDIIRV 91
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match:
A0A0D9XYN2_9ORYZ (Coilin n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XYN2_9ORYZ)
HSP 1 Score: 55.1 bits (131), Expect = 6.710e-5
Identity = 33/92 (35.87%), Postives = 51/92 (55.43%), Query Frame = -1
Query: 501 LIVTPPPRRIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 773
+ TP R+R+VF S + +R W +P +L V DLA H+A + + + SR ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 1 MATTPAAVRLRLVFDNRRLLRRSQRESGLRRCWLLLPADLPTVADLAGHIAARFRLRRSCSR--CVILSIDGFVLPPFESTCIFRDNDIIRV 90
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 6
0 1 Expect = 2.83e-36 / Id = 67.92 Expect = 6.17e-8 / Id = 38.46 Expect = 6.73e-7 / Id = 37.89 Expect = 1.54e-6 / Id = 37.63 Expect = 3.77e-5 / Id = 36.56 Expect = 6.71e-5 / Id = 35.87 Sequence A0A6H5L4H0_9PHAE A0A0P0Y9A7_ORYSJ B8BP67_ORYSI A0A0E0RG41_ORYRU A0A6G1BQ98_9ORYZ A0A0D9XYN2_9ORYZ back to top
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927325.9114153-CDS-C-linearis_contig10:2025842..2026475 1622927325.9114153-CDS-C-linearis_contig10:2025842..2026475 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2025843..2026475 + 1690879627.7461665-CDS-C-linearis_contig10:2025842..2026475 1690879627.7461665-CDS-C-linearis_contig10:2025842..2026475 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2025843..2026475 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927325.9237726-UTR-C-linearis_contig10:2026475..2026684 1622927325.9237726-UTR-C-linearis_contig10:2026475..2026684 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 2026476..2026684 + 1690879627.757637-UTR-C-linearis_contig10:2026475..2026684 1690879627.757637-UTR-C-linearis_contig10:2026475..2026684 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 2026476..2026684 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.536.1
>prot_C-linearis_contig10.536.1 ID=prot_C-linearis_contig10.536.1|Name=mRNA_C-linearis_contig10.536.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp
PPAPTALPGPWLAVLSPPCVELLLLLLLLPPDDEEPSSPDEEDDSSEEPS back to top mRNA from alignment at C-linearis_contig10:2025843..2026684+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.536.1 ID=mRNA_C-linearis_contig10.536.1|Name=mRNA_C-linearis_contig10.536.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at C-linearis_contig10:2025843..2026684+ (Chordaria linearis ClinC8C monoicous)CCACCGGCTCCGACGGCCTTGCCAGGACCCTGGCTAGCCGTTTTGTCCCC
GCCTTGCGTTGAGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCAGATGACG
AGGAACCCTCCTCGCCTGATGAGGAGGATGATTCGTCGGAGGAGCCGTCC
TCTGAGGAAGAGCTCTGCGCAGCCGCGGCTTTCGCCTTCGCGCTTTTCTT
CGCTGCCGGAGGAGGGGATTTCTTGCTTACAGAGGCTGCTGCTGCTGCTG
CTGCAGACGAGGAGGCAACCTTCCGCCGCTTGCCAGCAACGGCGGTAGCT
GCAGCGGCTGCTGCCGAAGACTCCGCGGCGGGCGCCCGTCGTTTCTTGCC
CCCAGCACTGGCTAGCTGGACAGTGGGAGGTGCATTAACAGTGCTCGGGG
TCGTCTCGCCGCGCTTCTTCTTCTTCGATCGACCACTTGCCTTTGGCTTA
TCGTCCCGCACCCTGCTGTCGCCATCGCCTCTGTCCACCTCCCCACGCGT
GAGAGTCACCACGTCCGTCTCTCGCAGGATATCAAGGCTCTCGTTCGGGG
GCAGCACGAAGCCGTCCAGGCTGAGCACGAGGGACGAGCGCCGCGACTTC
TTGCCCTGCTGCTTGAGCTGCCGCGCGAGGTGA TGGGCCAGGTCGCCCAC
CACCTTCAAATTTGGAGGGATGAAGGCCCACCGCTGGCAGAGGGCTGGGT
TGCAGCTCGGGATGCACCCTGACTCCGCCGAGAACACCACGCGGATCCGG
CGTGGAGGCGGCGTCACTATTAGTGGTAGAGCCGCGGAGTCCATCCTGGA
CGCGTGTGCGGCGGAGAAGAGAGTTGGTCAAGCGCGTGGGTG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2025843..2026684+
>mRNA_C-linearis_contig10.536.1 ID=mRNA_C-linearis_contig10.536.1|Name=mRNA_C-linearis_contig10.536.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig10:2025843..2026684+ (Chordaria linearis ClinC8C monoicous) back to top