mRNA_C-linearis_contig10.536.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.830e-36 Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = -1 Query: 483 RMDSAALPLIVTPPPRRIRVVFSAESGCIPSCNPALCQRWAFIPPNLKVVGDLAHHLARQLKQQ-GKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTLTRGEVD 797
+MD+ ALP V PRRIRVVF A++GC+PS NP L +RW FIPP L V+GDLAHHL RQLK++ G+K+R SSLVL+LDGFVLPP ESLD+LRETDVVTLT + D
Sbjct: 53 KMDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLRQSD 158
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ) HSP 1 Score: 59.7 bits (143), Expect = 6.170e-8 Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = -1 Query: 507 IVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVV 770
+ TPP + R+R+VF + S + +R W +PP L V DLA H+A + + ++S S ++LS+DGFVLPP ES I R+ D++
Sbjct: 1 MATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRL--RRSCPSCVILSIDGFVLPPFESTCIFRDNDII 89
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI) HSP 1 Score: 61.2 bits (147), Expect = 6.730e-7 Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = -1 Query: 501 PLIVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 776
P + TPP + R+R+VF + S + +R W +PP L V DLA H+A + + ++S S ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 131 PPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRL--RRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRV 223
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU) HSP 1 Score: 60.1 bits (144), Expect = 1.540e-6 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = -1 Query: 501 IVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 770
+ TPP + R+R+VF + S + +R W +PP L V DLA H+A + + ++S S ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 1 MATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRL--RRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRV 91
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match: A0A6G1BQ98_9ORYZ (Coilin n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BQ98_9ORYZ) HSP 1 Score: 55.8 bits (133), Expect = 3.770e-5 Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = -1 Query: 501 IVTPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 770
+ TPP + R+R+VF + S + +R W +PP L V DLA H+A + + + S ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 1 MATPPAQVVRLRLVFDNQRLLRRSQRESGLRRCWLLLPPELATVADLAAHIAARFRL--RYSCPGCVILSIDGFVLPPFESTCIFRDNDIIRV 91
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Match: A0A0D9XYN2_9ORYZ (Coilin n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XYN2_9ORYZ) HSP 1 Score: 55.1 bits (131), Expect = 6.710e-5 Identity = 33/92 (35.87%), Postives = 51/92 (55.43%), Query Frame = -1 Query: 501 LIVTPPPRRIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKQQGKKSRRSSLVLSLDGFVLPPNESLDILRETDVVTL 773
+ TP R+R+VF S + +R W +P +L V DLA H+A + + + SR ++LS+DGFVLPP ES I R+ D++ +
Sbjct: 1 MATTPAAVRLRLVFDNRRLLRRSQRESGLRRCWLLLPADLPTVADLAGHIAARFRLRRSCSR--CVILSIDGFVLPPFESTCIFRDNDIIRV 90 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.536.1 >prot_C-linearis_contig10.536.1 ID=prot_C-linearis_contig10.536.1|Name=mRNA_C-linearis_contig10.536.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp PPAPTALPGPWLAVLSPPCVELLLLLLLLPPDDEEPSSPDEEDDSSEEPSback to top mRNA from alignment at C-linearis_contig10:2025843..2026684+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.536.1 ID=mRNA_C-linearis_contig10.536.1|Name=mRNA_C-linearis_contig10.536.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at C-linearis_contig10:2025843..2026684+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2025843..2026684+ >mRNA_C-linearis_contig10.536.1 ID=mRNA_C-linearis_contig10.536.1|Name=mRNA_C-linearis_contig10.536.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig10:2025843..2026684+ (Chordaria linearis ClinC8C monoicous)back to top |