mRNA_C-linearis_contig10.535.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.535.1
Unique NamemRNA_C-linearis_contig10.535.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2025131..2025775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.535.1prot_C-linearis_contig10.535.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2025381..2025773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.856887-UTR-C-linearis_contig10:2025130..20253801622927325.856887-UTR-C-linearis_contig10:2025130..2025380Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2025131..2025380 +
1690879627.708938-UTR-C-linearis_contig10:2025130..20253801690879627.708938-UTR-C-linearis_contig10:2025130..2025380Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2025131..2025380 +
1622927325.880024-UTR-C-linearis_contig10:2025773..20257751622927325.880024-UTR-C-linearis_contig10:2025773..2025775Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2025774..2025775 +
1690879627.7344365-UTR-C-linearis_contig10:2025773..20257751690879627.7344365-UTR-C-linearis_contig10:2025773..2025775Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2025774..2025775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.8699446-CDS-C-linearis_contig10:2025380..20257731622927325.8699446-CDS-C-linearis_contig10:2025380..2025773Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2025381..2025773 +
1690879627.7233772-CDS-C-linearis_contig10:2025380..20257731690879627.7233772-CDS-C-linearis_contig10:2025380..2025773Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2025381..2025773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.535.1

>prot_C-linearis_contig10.535.1 ID=prot_C-linearis_contig10.535.1|Name=mRNA_C-linearis_contig10.535.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=131bp
MAFLLPLLPPPARPAAAATLIVFFFSSDSSSDDDDESSEDDEELLEDDEE
LLEDDEEELSSEDDSEEEVVDSAAAAVTPPPPGFPPPPPLPGEAPAGGVA
LLLFLFLFFFLFVVDIATSSSSPPPAAPAG*
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mRNA from alignment at C-linearis_contig10:2025131..2025775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.535.1 ID=mRNA_C-linearis_contig10.535.1|Name=mRNA_C-linearis_contig10.535.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at C-linearis_contig10:2025131..2025775+ (Chordaria linearis ClinC8C monoicous)
ATTGCTCTCTCCGTGCCCTTCTGCTGTTTCCGTCTGGCCGTCCGGCCCGG
CGGCGGTGTCCTTGCCGCCCCCTGTGCTGGCCGTCGCCGTCCCCAGGTTC
TTGAGCTGCCCGACGATCCGGCCCAGCGGCCCGCCCCAGGCATTCTGCCC
AGGGACGGCGGCGCTTGAGGCGGCACAGTCGCCTAGTCCTCGGCCTCTCC
CCCTGCCAGCGGGCACCAGGTCGGGCTTCTTGGCGCTGGCTACGCCGCGC
ATGGCTTTCTTGTTGCCGCTGCTGCCGCCGCCGGCCCGCCCAGCTGCTGC
CGCTACCTTGATCGTTTTTTTCTTCTCGTCGGATTCCTCGTCAGATGATG
ATGATGAGTCCTCGGAAGATGATGAGGAGCTGCTGGAAGACGACGAGGAG
CTGCTTGAGGACGACGAGGAGGAGCTCTCGTCAGAAGACGACTCCGAAGA
GGAAGTGGTAGACTCGGCGGCAGCGGCGGTAACTCCTCCGCCGCCGGGCT
TTCCACCGCCTCCGCCACTACCAGGGGAAGCGCCCGCCGGTGGCGTCGCC
TTGCTCTTGTTCTTGTTTCTCTTTTTCTTTCTCTTTGTGGTTGACATTGC
CACCTCTTCCTCCTCCCCGCCCCCCGCCGCCCCAGCCGGGTAGAC
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Coding sequence (CDS) from alignment at C-linearis_contig10:2025131..2025775+

>mRNA_C-linearis_contig10.535.1 ID=mRNA_C-linearis_contig10.535.1|Name=mRNA_C-linearis_contig10.535.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at C-linearis_contig10:2025131..2025775+ (Chordaria linearis ClinC8C monoicous)
ATGGCTTTCTTGTTGCCGCTGCTGCCGCCGCCGGCCCGCCCAGCTGCTGC
CGCTACCTTGATCGTTTTTTTCTTCTCGTCGGATTCCTCGTCAGATGATG
ATGATGAGTCCTCGGAAGATGATGAGGAGCTGCTGGAAGACGACGAGGAG
CTGCTTGAGGACGACGAGGAGGAGCTCTCGTCAGAAGACGACTCCGAAGA
GGAAGTGGTAGACTCGGCGGCAGCGGCGGTAACTCCTCCGCCGCCGGGCT
TTCCACCGCCTCCGCCACTACCAGGGGAAGCGCCCGCCGGTGGCGTCGCC
TTGCTCTTGTTCTTGTTTCTCTTTTTCTTTCTCTTTGTGGTTGACATTGC
CACCTCTTCCTCCTCCCCGCCCCCCGCCGCCCCAGCCGGGTAGATGGCTT
TCTTGTTGCCGCTGCTGCCGCCGCCGGCCCGCCCAGCTGCTGCCGCTACC
TTGATCGTTTTTTTCTTCTCGTCGGATTCCTCGTCAGATGATGATGATGA
GTCCTCGGAAGATGATGAGGAGCTGCTGGAAGACGACGAGGAGCTGCTTG
AGGACGACGAGGAGGAGCTCTCGTCAGAAGACGACTCCGAAGAGGAAGTG
GTAGACTCGGCGGCAGCGGCGGTAACTCCTCCGCCGCCGGGCTTTCCACC
GCCTCCGCCACTACCAGGGGAAGCGCCCGCCGGTGGCGTCGCCTTGCTCT
TGTTCTTGTTTCTCTTTTTCTTTCTCTTTGTGGTTGACATTGCCACCTCT
TCCTCCTCCCCGCCCCCCGCCGCCCCAGCCGGGTAG
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