mRNA_C-linearis_contig10.532.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE) HSP 1 Score: 332 bits (851), Expect = 3.300e-98 Identity = 233/628 (37.10%), Postives = 308/628 (49.04%), Query Frame = 1 Query: 13 DIPMPLRFVQVGSGEMLRVVTRGSLIVDFHRRNSDDVCEDARVVLTGVSAVEGMGFNLLYLHALSETMAITIDPLGVHLLTNAVPPNGLTFPRNSSGASLYATRVQFTGTDFAASGVSSGSVYPHEPPPGDFPPDPSLLPFNGGGAGGGGAPSVMLPSTGDAGVGPENAPGDMLSTCADVVPDVFGFSPIDDDDVVPWNNSSDEPFCGAEGERFPPALVSVVPSTGIFPPTNTGVVTFLDGSVMQIPYTLEELRLVSGVLKIFSDEGDMEFVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGA 1890 +IP R+V VG G +L+V GS+ + F + + + V LT VS VE + FNL HA+S I D G L N L F R ++ YA R+ + D +A+ V DP+ LP + + P++AP + A VVP P V V G FP G D SV L + +L+ G + F+P + A S D G+ LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG R R G RAS+P HLDLCG + S+ G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G I+ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G V RRSA L ++++ I +D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ +++ +A AG+GG A Sbjct: 6 EIPASRRYVVVGDGRLLKVQAIGSIKLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAVSRKQQILYDERGATL------QNRLLFAREKKASAAYAMRLPY---DPSATIV-----------------DPAALP-------------AFVTA-------PDSAPAVGSARSATVVPSSESVPPTGPTXXXXXXXXXXXXXXXXXXXXXASEFVCV----GTFPGMYLG-----DTSV------LTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGA-AALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGCVHLDLCGPLMPSMGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMVARRSAALVLNVEFASITGLDPRGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSA 569
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5JSL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL0_9PHAE) HSP 1 Score: 329 bits (843), Expect = 9.730e-97 Identity = 233/631 (36.93%), Postives = 307/631 (48.65%), Query Frame = 1 Query: 13 DIPMPLRFVQVGSGEMLRVVTRGSLIVDFHRRNSDDVCEDARVVLTGVSAVEGMGFNLLYLHALSETMAITIDPLGVHLLTNAVPPNGLTFPRNSSGASLYATRVQFTGTDFAASGVSSGSVYPHEPPPGDFPPDPSLLPFNGGGAGGGGAPSVMLPSTGDAGVGPENAPGDMLSTCADVVPDVFGFSPIDDDDVVPWNNSSDEPFCGAEGERFPPALVSVVPSTGIFPPTNTGVVTFLDGSVMQIPYTLEELRLVSGVLKIFSDEGDMEFVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRF--TAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAG 1893 +IP ++V VG G +L V GS+ + F + + + V LT VS VE + FNL HA+S I D G L NGL F R ++ YA R+ + D +A+ V DP+ LP V P + A VG P S+ +V + P VVP +S + V G + L + +L+ G + F+P + A S D GA LGA AA+ P PF +G + +IN FHR H CE LLR+TA+Q+GI LTG+LE C C+ KG RA SR G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRK AL K + ++ +Y G I+ RVD GTE T FR FC + GI EFT P PQ N VE+AIWR+MK G RRSA F +D++ IP +D RGDRLW+ES + A + S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ +++ +A AG+GG AG Sbjct: 6 EIPASRKYVVVGDGRLLEVQAIGSINLSFFQEDENGEQTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDKRGATL------QNGLLFAREEKASAAYAIRLPY---DPSATFV-----------------DPAALPA-----------FVTAPDSAPA-VGSARFPSQKGSSAKSLV-SMLRIPPAGSASVVPSADSXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGA-AALGPGASPFALGSTEKSVDINRFHRSLAHACESLLRQTAQQRGIVLTGKLEPCTDCMRAKGRRASASRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKPDALGATKRLLAEVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGFEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFNVDFASIPGLDERGDRLWMESAXSPPSPASTSASATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSAG 594
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE) HSP 1 Score: 330 bits (846), Expect = 1.260e-94 Identity = 233/630 (36.98%), Postives = 309/630 (49.05%), Query Frame = 1 Query: 13 DIPMPLRFVQVGSGEMLRVVTRGSLIVDFHRRNSDDVCEDARVVLTGVSAVEGMGFNLLYLHALSETMAITIDPLGVHLLTNAVPPNGLTFPRNSSGASLYATRVQFTGTDFAASGVSSGSVYPHEPPPGDFPPDPSLL-PFNGGGAGGGGAPSVMLPSTGDAGVGPENAPGDMLSTCADVVPDVFGFSPIDDDDVVPWNNSSDEPFCGAEGERFPPALVSVVPSTGIFPPTNTGVVTFLDGSVMQIPYTLEELRLVSGVLKIFSDEGDMEFVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAG 1893 +IP ++V VG G +L + GS+ + F + + + V LT VS VE + F+L HA+S I D G L NGL F R ++ YA R+ + D +A+ V S ++ P P S P GG+ + +PS G S G FP + G D SV L + +L+ G ++ F+P + A S D GA LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG RA R G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G I+ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G RRSA F +D++ IP++D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ +++ +A AG+GG AG Sbjct: 6 EIPASRKYVVVGDGRLLELQAIGSINLSFFQEDDNGEKTTMCVKLTDVSVVESLSFSLFSAHAVSRKQQILHDERGATL------QNGLLFAREEKASAAYAMRLPY---DPSATIVDSAALPAFVTAPDSAPAVGSTRSPSQKGGSAESLVSVLRVPSAGSX--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEFVCVGTFPGMDLG-----DTSV------LTDEQLMDGYDDTPYEDFFPVFIPESDAANAAGVLDSIDGGADFDLGA-AALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASIPSLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSAG 592
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5J8D5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE) HSP 1 Score: 325 bits (833), Expect = 1.870e-93 Identity = 233/639 (36.46%), Postives = 307/639 (48.04%), Query Frame = 1 Query: 13 DIPMPLRFVQVGSGEMLRVVTRGSLIVDFHRRNSDDVCEDARVVLTGVSAVEGMGFNLLYLHALSETMAITIDPLGVHLLTNAVPPNGLTFPRNSSGASLYATRVQFTGTDFAASGVSSGSVYPHEPPPGDFPPDPSLLPFNGGGAGGGGAPSVMLPSTGDAGVGPENAPGDMLSTCADVVPDV----------FGFSPIDDDDVVPWNNSSDEPFCGAEGERFPPALVSVVPSTGIFPPTNTGVVTFLDGSVMQIPYTLEELRLVSGVLKIFSDEGDMEFVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAG 1893 +IP ++V VG G +L V GS+ + F + + + V LT VS VE + FNL HA+S I D G L NGL F R ++ YA R+ + D +A+ V DP+ LP V P + A VG +P + +V + S G FP + G D SV L + +L+ G + F+P + A S D GA LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG R R G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G ++ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G RRSA F +D++ IP +D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YL H TV+VLK STGR ++ ++ +++ +A AG+GG AG Sbjct: 308 EIPASRKYVVVGDGRLLEVQAIGSINLSFFQVDENGEQTTMCVKLTDVSVVESLSFNLFSTHAVSLKQQILYDKRGATL------QNGLLFAREDKASAAYAIRLPY---DPSATIV-----------------DPAALPA-----------FVTAPDSAPA-VGSTRSPSQKGGSAESLVSVLRVPSAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEFVCVGTFPGMDLG-----DTSV------LTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGA-AALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRVECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFNVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCSYLNGGENHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSAG 894
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5KBH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH5_9PHAE) HSP 1 Score: 308 bits (790), Expect = 7.650e-92 Identity = 228/647 (35.24%), Postives = 298/647 (46.06%), Query Frame = 1 Query: 13 DIPMPLRFVQVGSGEMLRVVTRGSLIVDFHRRNSDDVCEDARVVLTGVSAVEGMGFNLLYLHALSETMAITIDPLGVHLLTNAVPPNGLTFPRNSSGASLYATRVQFTGTDFAASGVSSGSVYPHEPPPGDFPPDPSLL-PFNGGGAGGGGAPSVMLPSTGDAGVGPENAPGDMLSTCADVVPDVFGFSPIDDDDVVPWNNSSDEPFCGAEGERFPPALVSVVPSTGIFPPTNTGVVTFLDGSVMQIPYTLEELRLVSGVLKIFSDEGDMEFVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRR--------------------------SAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAA 1866 +IP ++V G G +L V G + + F + + + V LT VS VE + FNL HA+S I D G L NGL F R ++ YA R+ + D +A+ V S ++ P P S P GG+ + +PS G S G FP + G D SV L + +L+ G + F+P + A S D GA LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG RA R G RAS+P HLDLCG + SL G +YLLV VDS SR+ YGLRRKS AL K + D+ +Y G I+ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G RR SA F +D++ IP +D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ TKLDDQ YYL H TV+VLK STGR ++ ++ +++ A A Sbjct: 6 EIPASRKYVVEGDGRLLEVQAIGFINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAVSRKQQILHDERGATL------QNGLLFAREEKASAAYAMRLPY---DPSATIVDSAALPAFVTAPDSAPAVGSTRSPSQKGGSAESLVSVLRVPSAGSX--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEFVCVGTFPGMDLG-----DTSV------LTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGA-AALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLLVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRXXXXXXXXXXXXXXXXXXXXXXXXXXSAGRVFDVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDCCTKLDDQATLCYYLNGGENHPSGTVKVLKASTGRVVYTNNVSWVTSAPA 611
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5KAL3_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL3_9PHAE) HSP 1 Score: 296 bits (757), Expect = 4.380e-90 Identity = 162/330 (49.09%), Postives = 200/330 (60.61%), Query Frame = 1 Query: 823 FVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLK 1806 F+P + A F S D GA LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG R R G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G +++ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G RRSA +D++ IP +D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK Sbjct: 30 FIPECDAANVAGVFDSIDGGADFDLGA-AALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGRIHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRVESSRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAARVLNVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLK 358
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5JZF4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF4_9PHAE) HSP 1 Score: 302 bits (774), Expect = 8.860e-90 Identity = 170/359 (47.35%), Postives = 216/359 (60.17%), Query Frame = 1 Query: 823 FVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAG 1893 F+P + A S D GA LGA AA+ P PF +G + +INHFHR H CE LLRETA+Q+GI LTG+LE C C+ KG RA R G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G I+ VD GTE T FR FC + I +EFT P Q N VE+AIWR++K G RRSA F +D++ IP +D RGD LW+ES ++ N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ +++ +A AG+GG AG Sbjct: 31 FIPESDAANVAGVLDSIDGGADFDLGA-AALGPGASPFALGSTEKSVDINHFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVKRYDLGRIECFHVDNGTEWTRGDFRRFCDDNCIGVEFTTPGVLQYNGVVESAIWRIVKAGMTARRSAGRVFNVDFASIPGLDERGDLLWMESAKWATDALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSAG 386
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE) HSP 1 Score: 312 bits (800), Expect = 1.360e-88 Identity = 174/359 (48.47%), Postives = 220/359 (61.28%), Query Frame = 1 Query: 823 FVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAG 1893 F+P + A S D G+ LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG RA R G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G I+ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G RRSA F +D++ IP +D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ +++ +A AG+GG AG Sbjct: 597 FIPESDAANVAGVLDSIDGGSDFDLGA-AALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSAG 952
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE) HSP 1 Score: 313 bits (801), Expect = 9.490e-88 Identity = 186/432 (43.06%), Postives = 240/432 (55.56%), Query Frame = 1 Query: 685 TGIFPPTNTGVVTFLDGSVMQIPYTLEELRLVSGVLKIFSDEGDMEFVPSGNYGEYANGFLSDAGAALLLGAF------------AAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAGAIVPATQQRPSFGPAL 1941 T + PP + V L S + T + L G +F+DE M+ Y ++ F+ + AA+ G AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG LE C C+ KG RA + G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G I+ R+D GTE T FR C + GI +EFT P PQ N VE+AIWR+MK G RRSA +DY+ I +D RGDRLWLES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ ++ +A AGKGG AG +PA P F P + Sbjct: 413 TTVVPPAGSTDVVPLSASGFECVGTFPGMDL--GDTSVFTDELLMDGYDKTPYQDFFPAFMPENEAAIAAGVMDGIDGVGFDVGVAALGPGASPFSIGSTDKSVDINRFHRSLAHACEPLLRETARQRGITLTGTLEPCSDCMKAKGKRASVPKGPGARASKPLGRVHLDLCGPLAPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRIDNGTEWTRGEFRRCCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAARVLNVDYASITGLDPRGDRLWLESAKWAADALNQSATKANPGRRSPHELFTGQQGPFRVLPFFQPGYMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSCVT--SAPAGKGGSAG--IPAAPTPPPFTPVV 838
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE) HSP 1 Score: 312 bits (800), Expect = 1.750e-87 Identity = 174/359 (48.47%), Postives = 220/359 (61.28%), Query Frame = 1 Query: 823 FVPSGNYGEYANGFLS-DAGAALLLGAFAAIAPKRRPFRVGPPTNAFEINHFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTSRA-GGRASEPGVTYHLDLCGAVTASLCGCVYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTE*TSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNVSPYEAFTGTKPDAIIVPFLQPLIMRKQRVTKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAGKGGGAG 1893 F+P + A S D G+ LGA AA+ P PF +G + +IN FHR H CE LLRETA+Q+GI LTG+LE C C+ KG RA R G RAS+P HLDLCG + SL G +YL V VDS SR+ YGLRRKS AL K + D+ +Y G I+ RVD GTE T FR FC + GI +EFT P PQ N VE+AIWR+MK G RRSA F +D++ IP +D RGDRLW+ES ++ A N+S TKANPG SP+E FTG + ++PF QP MR+ R TKLDDQ YYL H TV+VLK STGR ++ ++ +++ +A AG+GG AG Sbjct: 743 FIPESDAANVAGVLDSIDGGSDFDLGA-AALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT--SAPAGEGGSAG 1098 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.532.1 >prot_C-linearis_contig10.532.1 ID=prot_C-linearis_contig10.532.1|Name=mRNA_C-linearis_contig10.532.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=445bp MPLRFVQVGSGEMLRVVTRGSLIVDFHRRNSDDVCEDARVVLTGVSAVEGback to top mRNA from alignment at C-linearis_contig10:2013925..2016156+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.532.1 ID=mRNA_C-linearis_contig10.532.1|Name=mRNA_C-linearis_contig10.532.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2232bp|location=Sequence derived from alignment at C-linearis_contig10:2013925..2016156+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2013925..2016156+ >mRNA_C-linearis_contig10.532.1 ID=mRNA_C-linearis_contig10.532.1|Name=mRNA_C-linearis_contig10.532.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at C-linearis_contig10:2013925..2016156+ (Chordaria linearis ClinC8C monoicous)back to top |