mRNA_C-linearis_contig10.530.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: D8LRE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE7_ECTSI) HSP 1 Score: 187 bits (476), Expect = 6.990e-49 Identity = 104/201 (51.74%), Postives = 132/201 (65.67%), Query Frame = 3
Query: 285 SRHNWDPFCMTCKLSQPELVGRCDADVFFKEP-----------VALEEFQIQTPAG-MGVRMICPSCRTNEFVQPPGVSRNGY-NMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGD 848
+R P T +S+ G D +E VAL +++T G +GVRMICPSC TNEFV+ PGVS NG+ ++ S +IRVAH++ GV++P+ GK+RCKNPACAL SAR AEK E+N GG + S+IVW+DAAV S C +GVSFNTM YMQLLPA + A LPYR+F QNGTS +LLDMV +GD
Sbjct: 216 ARAAMHPTAATAAMSRAATDGGADMGELLREAAMAAFATIHVAVALYVHEVKTNGGEVGVRMICPSCLTNEFVETPGVSGNGFPSVSSQKIRVAHDIHGVVVPVFGKYRCKNPACALNVRSARQSAEKAEKN-GGPKASEIVWDDAAVTSHCKNGVSFNTMDTRYMQLLPAAVVAKLPYRFFKQNGTSERLLDMVSATEGD 415
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: D7FLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ5_ECTSI) HSP 1 Score: 179 bits (453), Expect = 6.030e-46 Identity = 100/195 (51.28%), Postives = 128/195 (65.64%), Query Frame = 3
Query: 303 PFCMTCKLSQPELVGRCDADVFFKEP-----------VALEEFQIQTPAG-MGVRMICPSCRTNEFVQPPGVSRNGY-NMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGD 848
P T +S+ G D +E VAL +++T G +GVRMICPSC TNEFV+ PGVS NG+ ++ S +IRVAH++ GV++ + GK+RCKNPACAL SAR AEK E+N GG + S+IVW+DAAV S C +GV+FNTM YMQLLPA + A LPYR+F QN TS +LLDMV +GD
Sbjct: 120 PTAATAAMSRAATDGGADMGELLREAAMAAFATIHVAVALYVHEVKTNGGEVGVRMICPSCLTNEFVETPGVSGNGFPSVSSQKIRVAHDIHGVVVHVFGKYRCKNPACALNVRSARKSAEKAEKN-GGPKASEIVWDDAAVTSHCKNGVAFNTMDTRYMQLLPAAVVAKLPYRFFKQNITSERLLDMVSATEGD 313
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: D8LRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE6_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.250e-43 Identity = 113/353 (32.01%), Postives = 175/353 (49.58%), Query Frame = 3
Query: 156 PGGRGGTNDVVEGPALQAFSCHRS------CRR*MNAGETRVAVRNAPNSR---------------HNWDPFCM-TCKLSQPELVGRCDADVFFKEPVALEEFQIQTPAGMGVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEI-QAMLPYRWFTQNGTSLKLLDMVRGLD-----GDVQEKDNMTGGILGLHSGRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESM-------ERYSEPRGLKGTLLDLQ*FYDDRCCR 1109
PG RG +D V P L+A + R C+ + + ETR P++ H M T E+ +FF+E V + F++ T G GVRMICP C++N+FV+PPGVS +G+ ++RVAH+V GV++P+TG++ C P C L SA+ A +++ V+D W++ + C +GVSFNTM +S Q + + + P+ + N +S+ V L+ G ++K +M +L L G+ + AD S R+ G+ LY ++ ED K H +G++K+ES +RY+E R GTL LQ DD CCR
Sbjct: 77 PGTRGRGSDNVRSPRLEAAAFKRRFPNSPVCKP-LESVETRAIEAMQPSAATGAMQDRPKKDEDLGHRLREAAMATFATIDVEIAPYVHEVIFFEELVRDDRFKVNTRGGAGVRMICPGCKSNKFVKPPGVSGHGFPCMGAKLRVAHDVAGVVVPVTGRYACLGPGCPLRLESAKRSAARKK-----SVVADDGWDEDTIKKHCPNGVSFNTMDESKQQEIERKAGRGPTPWPPWKFNRSSITATPSVAVLNTIYAAGHEEDKGHMHRELLSLVDGQFVNADGSYRLIGR-ANHDAHCLYSLMREDAKIHAYGALKSESKVETLPLYKRYAERRRRSGTLTTLQWIIDDLCCR 422
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5JTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ4_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 8.120e-16 Identity = 61/178 (34.27%), Postives = 86/178 (48.31%), Query Frame = 3
Query: 360 DVFFKEPV-----------ALEEFQIQTPAG--MGVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGDVQ 854
DV KEP AL ++ T G GVRMICP C++N V+P GVS + + R + + G + + K + P +V V+D W++A + C +G S M D+YMQLLP E + LP+R+F+QNGTS LLD VR +GD+Q
Sbjct: 155 DVLLKEPAMAVFATTQVVFALHVHEVVTTPGGAKGVRMICPGCKSNSEVKPLGVSGHDFPNGGAR-KASRTFAGALS--SWKVPRRRPTKNVV-------------------VADDGWDEATIREHCPNGASCTVMDDTYMQLLPEETVSRLPFRYFSQNGTSETLLDQVRATEGDLQ 310
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5JZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ63_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 5.370e-14 Identity = 95/370 (25.68%), Postives = 143/370 (38.65%), Query Frame = 3
Query: 240 MNAGETRVAVRNAPNSRHNWDPFCMTCKLSQPELVGRCDADVFFK----EPVALEEFQIQTPAGM-GVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIV----WNDAAVISRCADGVSFNTMGDSY------MQLLPAEIQAMLPYR---------WFTQNGT-----SLKLL--------DMVRGLDGDV------------------------------------QEKDNMTGGILGLHSGRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESME-------RYSEPRGLKGTLLDLQ*FYDDRCCR 1109
M A + A+R+ D L +P + V F E V + E + TP G GVRMICP C++N V+PPGVS +G+ P G H+ + + G R + + +GGQQ ++ W++A + +G S TM D + ++ + I+ +R W GT S+ +L D VRG D Q+K++M I + G+ + D + R+ G S L+F+LGED K H G++++E E RY+E R GTLL L+ FYDD CCR
Sbjct: 39 MKAAKVTPAMRSRIGKGEIMDVL-----LKEPAMAVFAMTQVMFALYVHEVVYVHEV-VTTPGGAKGVRMICPGCKSNSEVKPPGVSGHGF------------------PNAGAHKASSTFAVFLHG-LRVPSRLGKCQEGGQQKRVVIANDGWDEATIREHGPNGASLTTMDDRHGEQGRELREMHRYIRFAAKHRSAEHALWPGWKFSRGTLISTPSIVVLNTIYKAGHDDVRGGSVDTFLVLVRFLVSARVLFRRVQILLCRHTDHNVVFCRHPQDKEHMQREIHSQYWGQFLCMDGTWRI-GLRVIDSPDCLFFLLGEDAKVHAGGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWFYDDLCCR 382
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5KAB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB7_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.100e-12 Identity = 70/247 (28.34%), Postives = 105/247 (42.51%), Query Frame = 3
Query: 402 IQTPAGM-GVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGDVQEKDNMTGGILGLHS---GRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESME-------RYSEPRGLKGTLLDLQ*FYDDRCCR 1109
+ TP+G GVRMICP C++N V+PPGVS + + P G + A G+ S ++D W++A C +G SF TM D + + + + + W + R L + + T +HS G+ + D + R+ G S L F+LGED K H +G++++E E RY+E R GTLL L+ YDD CCR
Sbjct: 119 VTTPSGAKGVRMICPGCKSNSEVKPPGVSGHDF------------------PNAGAQK----ASRTFAGTLSSWKVPRRWPTKKVVIADDGWDEATSREHCPNGASFITMDDRIL-VAGEQGRELREIHWCIR----------FRVLSSSTGQGAHATR----IHSQCEGQFLCMDGTWRI-GLRVIDSPDCLCFLLGEDAKVHSYGAVQSERKEEIYLLLNRYAERRRRNGTLLALEWVYDDLCCR 327
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5KHD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD6_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 9.070e-7 Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3
Query: 843 GDVQEKDNMTGGILGLHSGRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESME-------RYSEPRGLKGTLLDLQ*FYDDRCCR 1109
G +K++M I + G+ + D + R+ G S L+F+LGED K +G++++E E RY+E R GTLL L+ FYDD CCR
Sbjct: 64 GHDNDKEHMQREIHSQYGGQFLCMDGTWRI-GLRVIDSPDCLFFLLGEDAKVPAYGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWFYDDLCCR 158 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.530.1 >prot_C-linearis_contig10.530.1 ID=prot_C-linearis_contig10.530.1|Name=mRNA_C-linearis_contig10.530.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=282bp MNAGETRVAVRNAPNSRHNWDPFCMTCKLSQPELVGRCDADVFFKEPVALback to top mRNA from alignment at C-linearis_contig10:1872274..1874609- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.530.1 ID=mRNA_C-linearis_contig10.530.1|Name=mRNA_C-linearis_contig10.530.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2336bp|location=Sequence derived from alignment at C-linearis_contig10:1872274..1874609- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1872274..1874609- >mRNA_C-linearis_contig10.530.1 ID=mRNA_C-linearis_contig10.530.1|Name=mRNA_C-linearis_contig10.530.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at C-linearis_contig10:1872274..1874609- (Chordaria linearis ClinC8C monoicous)back to top |