mRNA_C-linearis_contig10.530.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: D8LRE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE7_ECTSI) HSP 1 Score: 187 bits (476), Expect = 6.990e-49 Identity = 104/201 (51.74%), Postives = 132/201 (65.67%), Query Frame = 3 Query: 285 SRHNWDPFCMTCKLSQPELVGRCDADVFFKEP-----------VALEEFQIQTPAG-MGVRMICPSCRTNEFVQPPGVSRNGY-NMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGD 848 +R P T +S+ G D +E VAL +++T G +GVRMICPSC TNEFV+ PGVS NG+ ++ S +IRVAH++ GV++P+ GK+RCKNPACAL SAR AEK E+N GG + S+IVW+DAAV S C +GVSFNTM YMQLLPA + A LPYR+F QNGTS +LLDMV +GD Sbjct: 216 ARAAMHPTAATAAMSRAATDGGADMGELLREAAMAAFATIHVAVALYVHEVKTNGGEVGVRMICPSCLTNEFVETPGVSGNGFPSVSSQKIRVAHDIHGVVVPVFGKYRCKNPACALNVRSARQSAEKAEKN-GGPKASEIVWDDAAVTSHCKNGVSFNTMDTRYMQLLPAAVVAKLPYRFFKQNGTSERLLDMVSATEGD 415
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: D7FLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ5_ECTSI) HSP 1 Score: 179 bits (453), Expect = 6.030e-46 Identity = 100/195 (51.28%), Postives = 128/195 (65.64%), Query Frame = 3 Query: 303 PFCMTCKLSQPELVGRCDADVFFKEP-----------VALEEFQIQTPAG-MGVRMICPSCRTNEFVQPPGVSRNGY-NMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGD 848 P T +S+ G D +E VAL +++T G +GVRMICPSC TNEFV+ PGVS NG+ ++ S +IRVAH++ GV++ + GK+RCKNPACAL SAR AEK E+N GG + S+IVW+DAAV S C +GV+FNTM YMQLLPA + A LPYR+F QN TS +LLDMV +GD Sbjct: 120 PTAATAAMSRAATDGGADMGELLREAAMAAFATIHVAVALYVHEVKTNGGEVGVRMICPSCLTNEFVETPGVSGNGFPSVSSQKIRVAHDIHGVVVHVFGKYRCKNPACALNVRSARKSAEKAEKN-GGPKASEIVWDDAAVTSHCKNGVAFNTMDTRYMQLLPAAVVAKLPYRFFKQNITSERLLDMVSATEGD 313
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: D8LRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE6_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.250e-43 Identity = 113/353 (32.01%), Postives = 175/353 (49.58%), Query Frame = 3 Query: 156 PGGRGGTNDVVEGPALQAFSCHRS------CRR*MNAGETRVAVRNAPNSR---------------HNWDPFCM-TCKLSQPELVGRCDADVFFKEPVALEEFQIQTPAGMGVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEI-QAMLPYRWFTQNGTSLKLLDMVRGLD-----GDVQEKDNMTGGILGLHSGRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESM-------ERYSEPRGLKGTLLDLQ*FYDDRCCR 1109 PG RG +D V P L+A + R C+ + + ETR P++ H M T E+ +FF+E V + F++ T G GVRMICP C++N+FV+PPGVS +G+ ++RVAH+V GV++P+TG++ C P C L SA+ A +++ V+D W++ + C +GVSFNTM +S Q + + + P+ + N +S+ V L+ G ++K +M +L L G+ + AD S R+ G+ LY ++ ED K H +G++K+ES +RY+E R GTL LQ DD CCR Sbjct: 77 PGTRGRGSDNVRSPRLEAAAFKRRFPNSPVCKP-LESVETRAIEAMQPSAATGAMQDRPKKDEDLGHRLREAAMATFATIDVEIAPYVHEVIFFEELVRDDRFKVNTRGGAGVRMICPGCKSNKFVKPPGVSGHGFPCMGAKLRVAHDVAGVVVPVTGRYACLGPGCPLRLESAKRSAARKK-----SVVADDGWDEDTIKKHCPNGVSFNTMDESKQQEIERKAGRGPTPWPPWKFNRSSITATPSVAVLNTIYAAGHEEDKGHMHRELLSLVDGQFVNADGSYRLIGR-ANHDAHCLYSLMREDAKIHAYGALKSESKVETLPLYKRYAERRRRSGTLTTLQWIIDDLCCR 422
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5JTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ4_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 8.120e-16 Identity = 61/178 (34.27%), Postives = 86/178 (48.31%), Query Frame = 3 Query: 360 DVFFKEPV-----------ALEEFQIQTPAG--MGVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGDVQ 854 DV KEP AL ++ T G GVRMICP C++N V+P GVS + + R + + G + + K + P +V V+D W++A + C +G S M D+YMQLLP E + LP+R+F+QNGTS LLD VR +GD+Q Sbjct: 155 DVLLKEPAMAVFATTQVVFALHVHEVVTTPGGAKGVRMICPGCKSNSEVKPLGVSGHDFPNGGAR-KASRTFAGALS--SWKVPRRRPTKNVV-------------------VADDGWDEATIREHCPNGASCTVMDDTYMQLLPEETVSRLPFRYFSQNGTSETLLDQVRATEGDLQ 310
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5JZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ63_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 5.370e-14 Identity = 95/370 (25.68%), Postives = 143/370 (38.65%), Query Frame = 3 Query: 240 MNAGETRVAVRNAPNSRHNWDPFCMTCKLSQPELVGRCDADVFFK----EPVALEEFQIQTPAGM-GVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIV----WNDAAVISRCADGVSFNTMGDSY------MQLLPAEIQAMLPYR---------WFTQNGT-----SLKLL--------DMVRGLDGDV------------------------------------QEKDNMTGGILGLHSGRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESME-------RYSEPRGLKGTLLDLQ*FYDDRCCR 1109 M A + A+R+ D L +P + V F E V + E + TP G GVRMICP C++N V+PPGVS +G+ P G H+ + + G R + + +GGQQ ++ W++A + +G S TM D + ++ + I+ +R W GT S+ +L D VRG D Q+K++M I + G+ + D + R+ G S L+F+LGED K H G++++E E RY+E R GTLL L+ FYDD CCR Sbjct: 39 MKAAKVTPAMRSRIGKGEIMDVL-----LKEPAMAVFAMTQVMFALYVHEVVYVHEV-VTTPGGAKGVRMICPGCKSNSEVKPPGVSGHGF------------------PNAGAHKASSTFAVFLHG-LRVPSRLGKCQEGGQQKRVVIANDGWDEATIREHGPNGASLTTMDDRHGEQGRELREMHRYIRFAAKHRSAEHALWPGWKFSRGTLISTPSIVVLNTIYKAGHDDVRGGSVDTFLVLVRFLVSARVLFRRVQILLCRHTDHNVVFCRHPQDKEHMQREIHSQYWGQFLCMDGTWRI-GLRVIDSPDCLFFLLGEDAKVHAGGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWFYDDLCCR 382
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5KAB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB7_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.100e-12 Identity = 70/247 (28.34%), Postives = 105/247 (42.51%), Query Frame = 3 Query: 402 IQTPAGM-GVRMICPSCRTNEFVQPPGVSRNGYNMFSTRIRVAHNVDGVMIPLTGKHRCKNPACALVRGSARSKAEKEEQNQGGQQVSDIVWNDAAVISRCADGVSFNTMGDSYMQLLPAEIQAMLPYRWFTQNGTSLKLLDMVRGLDGDVQEKDNMTGGILGLHS---GRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESME-------RYSEPRGLKGTLLDLQ*FYDDRCCR 1109 + TP+G GVRMICP C++N V+PPGVS + + P G + A G+ S ++D W++A C +G SF TM D + + + + + W + R L + + T +HS G+ + D + R+ G S L F+LGED K H +G++++E E RY+E R GTLL L+ YDD CCR Sbjct: 119 VTTPSGAKGVRMICPGCKSNSEVKPPGVSGHDF------------------PNAGAQK----ASRTFAGTLSSWKVPRRWPTKKVVIADDGWDEATSREHCPNGASFITMDDRIL-VAGEQGRELREIHWCIR----------FRVLSSSTGQGAHATR----IHSQCEGQFLCMDGTWRI-GLRVIDSPDCLCFLLGEDAKVHSYGAVQSERKEEIYLLLNRYAERRRRNGTLLALEWVYDDLCCR 327
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Match: A0A6H5KHD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD6_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 9.070e-7 Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3 Query: 843 GDVQEKDNMTGGILGLHSGRIIKADTSDRVAGKNTTFSVKGLYFVLGEDGKTHRFGSIKTESME-------RYSEPRGLKGTLLDLQ*FYDDRCCR 1109 G +K++M I + G+ + D + R+ G S L+F+LGED K +G++++E E RY+E R GTLL L+ FYDD CCR Sbjct: 64 GHDNDKEHMQREIHSQYGGQFLCMDGTWRI-GLRVIDSPDCLFFLLGEDAKVPAYGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWFYDDLCCR 158 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.530.1 >prot_C-linearis_contig10.530.1 ID=prot_C-linearis_contig10.530.1|Name=mRNA_C-linearis_contig10.530.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=282bp MNAGETRVAVRNAPNSRHNWDPFCMTCKLSQPELVGRCDADVFFKEPVALback to top mRNA from alignment at C-linearis_contig10:1872274..1874609- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.530.1 ID=mRNA_C-linearis_contig10.530.1|Name=mRNA_C-linearis_contig10.530.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2336bp|location=Sequence derived from alignment at C-linearis_contig10:1872274..1874609- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1872274..1874609- >mRNA_C-linearis_contig10.530.1 ID=mRNA_C-linearis_contig10.530.1|Name=mRNA_C-linearis_contig10.530.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at C-linearis_contig10:1872274..1874609- (Chordaria linearis ClinC8C monoicous)back to top |