mRNA_C-linearis_contig10.520.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 1338 bits (3463), Expect = 0.000e+0 Identity = 739/872 (84.75%), Postives = 782/872 (89.68%), Query Frame = 1 Query: 1 EVARVALEMGSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATLAEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAVLLYDDGADDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECIPSLKAVVQFGINECAWDITHDVALRLLRVQKDAAVGHAELRHTLESLIHCANALNLNSGADAHRRELSSMVDAAWEERSHTANSPPRLVAEQLLERGQQLAITRRPDEAHEAISEALRIQQDGGGDFERLEISATLEFLAIVLVDLKRYNEGVEVYQRCLRIKENLYGHEHLRLTVTLHNLAVCALKRGEPGDVEMASELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKRLEDATTK 2616 E ARV L+MGST ADIV F ELGGEVPVVGAVL TLKAIR + E VQSN E LKALEERCTYVTA V+VKWRQ SSSEM+VAPLESCVNAAEDFI RCS+RG CGRCTKASSD DEL LN+RVDSL GD+GL +A+LDAKVDDLKA LAE I QN PA+VPVAAVP GKP E SWHVARDRVV+AVYEHLS GQ PQVVGLVGRSGSGKTTCAASIVGE G R Q+ETGDQMLRRLNRVREHFRDGVVWLRVGRG GSA+R PALMS LAKTVFE+L HSYGFAPG GS FI DFVRG G AA KRCL+VADDVWEVDILEELRHTGMWVLFT+RDP LVERVEGSVVPVDQLSKAEAE LLRGAAELSTGSSLPSAAA++IERCDRMAN LEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEA AQK+DE L VKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAV L+DD A++ ASQRRTRQAAKVVANLEQWAVVTMHG+LFRMHDAH+DFARNKLK+SEDVRA A+RRWRGF S L T+RS DYFE+VDLWHATE +GGESWRVSRPYHVALDS+ DSS ECIPSLKAVV+FGINECAW++THDVALRLLRVQKDAAV HAE+RHTLESLIHCANALNLNS ADAHRRELS MVDAAWE RS+TA+SPPRLVA++LLERGQQLAITRRPDEAHEAISEALR+Q++ GDFERLEISATLEFLAIVLVDLKRYNEGVEVYQRCLRIKE+LYG EHLRLTVTLHNLAVCALKRGEPGDVE ASEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RIKRLEDA T+ Sbjct: 54 EAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKAMLAEVIAQNTMPASVPVAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTGR--RHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTGGGSAFISDFVRGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEANAQKSDEDLSGVKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAVFLFDDWAEERASQRRTRQAAKVVANLEQWAVVTMHGNLFRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMIGGESWRVSRPYHVALDSLRDSSPECIPSLKAVVEFGINECAWEVTHDVALRLLRVQKDAAVEHAEVRHTLESLIHCANALNLNSDADAHRRELSLMVDAAWENRSNTASSPPRLVAKRLLERGQQLAITRRPDEAHEAISEALRLQEERSGDFERLEISATLEFLAIVLVDLKRYNEGVEVYQRCLRIKEDLYGLEHLRLTVTLHNLAVCALKRGEPGDVEKASELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQRHWEERIKRLEDANTE 923
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 7.860e-145 Identity = 331/826 (40.07%), Postives = 445/826 (53.87%), Query Frame = 1 Query: 1 EVARVALEMGSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATL------AEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVLLYD--DGADDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECIPSLKAVVQFGINECAWDITHDVAL--RLLRVQK-DAAVGHAELRHTLESLIHCANAL-NLNSGADAHRRELSSMVDAAWEERSHTANSPPRLVAEQLLERGQQLAITRRPDEAHEAISEALRIQQDGGGDFERLEISATLEF------LAIVLVDLKRYNEGVEVYQRCLRIKENLYGHEHLRLTVTLHNLAVCALKRG 2418 E AR+ALE+GST++D V +LG E+PV+ V TLKAIR VETV++N E L ALE+RCTY+TA VVK R SE+DVAPL+ CV AA++F ERCS+RG R KA SDK E+A LN+ VD L D+GL +A L+ KVDD+K TL E++P++ +AAVP G P +SWHV R + V + L+ VV L G SGSGKTT AA IV R VRE F DG+VWL V GA R P+LM LA+ V EE+ S G P + D +T+I+ + G R +CL+VAD+VWE D++ +L TGMWVL +TRD +V+R G V VD+LS+A+AES+L+ AAEL S LP A +I+ C R+A + FVGRWSTV+G D W++A S I EM + + + + E +P +R AIL+ GF DLA + + LYLSLAVMPDG AF K+AAVLLYD +D AS A VV LE+W+++ +RMHDAHTDFAR L VR PA++RW ++S+L +RSTD + L LW A E +GG+ W +RPY AL + +S + + +AV F E D+ A RLL V+K + H + +T +L A L N+ A H +E+ + LA+ R + + L D + +A LEF LA L+ +R L +KE + G EHL++ TL L V A + G Sbjct: 11 EAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRL-IESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTLDRIDQRLESLPRSFGK----LAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIV--------------------RSTEVREAFSDGIVWLPVNEGAKK--RLPSLMLQLARMVHEEIGGSVGRVPSASE--DSATYIKQRLE-EGHKGRRLKCLVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWSTVRGRHDPASWSDAASTIRTEMEKVGHDPD-NDSAENIPAKRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEAS------AGGVVDVLERWSIIRSAQGTYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESDALLRTTAEAVGWF--QEAQEDLEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIWAERLGNIEEAAKWHEKEVEGLP----------------------------LALAR----MNALVRSGLEADLDDADSLSSVAATA-LEFRPGDRALAETLL------------RRSLDVKEAILGPEHLQVADTLRQLGVSAREAG 752
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 442 bits (1136), Expect = 4.510e-136 Identity = 309/843 (36.65%), Postives = 436/843 (51.72%), Query Frame = 1 Query: 1 EVARVALEMGSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATL--------------------------DAKVDDLKATLAEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVLLYD--DGADDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECI-PSLKAVVQFGINECAWDITHDVALRLLRVQK-DAAVGHAELRHTLESLIHCANAL-NLNSGADAHRRELSSMVDAAWEERSHTANSPPRLVAEQLLERGQQLAITRRPDEAHEAISEALRIQQDG--GGDFERLEISATLEFLAIVLVDLK--RYNEGVEVYQRCLRIKENLYGHEHLRLTVTLHNLAVCALKRG 2418 EVA++A +MGS AD+++F+ +LG E+P++ VL TL+ IREKVETV+ N E L L +RCTY+TA +VK R + +E+DVAPLE CVNA E F+ER +RG R KA DK ++ L R+ L GD+ L +A+L + ++L A + Q P VA VPKG P +SWHV R V V++ L + P +VGLVG SG+GKTT A++IV VRE F DG+VWL V G D P LM LA+ VFE++ S G P G D DG +++ V G + +CL+VAD+VWE D++ +L TGMW+L +TRD LV+R G VV VD+LS+AEAES+LR AAELS + LP A +IE C R+A L FVGRWSTV+G D W++A + AEM AE+ +++ +R AIL+AGF DLA + + LYLSLAV+PDG AF K+AAVLLYD G +D AS VV LE+W ++ +RMHDAH++FAR L DVR PA++R IS+L +RS + + L LW + VGG+ W +RPY AL+++ +S+S +++AV F + W + RLL V++ H + +T L CA N+ + HR++ H+A+ A+ Q G + L+ + +L LA ++ L E + +R L IK + +++ V H+L VC + G Sbjct: 11 EVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCR-HGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKP-PAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIV--------------------VRETFSDGIVWLPVNEGVH--DNLPCLMLQLAQMVFEDIGGSVGRRPSGSD--DGLAYVKQQVE-NGHGGKGLKCLVVADNVWESDVVSQLLETGMWILLSTRDEELVKRANGEVVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAFVGRWSTVRGRQDRTAWSDAACKVRAEMDKGGVTAESNGSEDSRVNRRR-AILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEAS------VGGVVEALERWTIIRSVEATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVEEVQLGADHPYVLNTYHCLARCAEHQDNVEEAKEWHRKQ-------------------------------------------HQALPLAMARAQSKHVGSEAAGLDDAGSLASLAATVITLHPGERGEAEMLLRRSLEIKMAELDQDDVQVAVVQHDLGVCIREAG 776
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 433 bits (1114), Expect = 3.780e-133 Identity = 294/685 (42.92%), Postives = 389/685 (56.79%), Query Frame = 1 Query: 1 EVARVALEMGSTVADIVEFMHELGGEVPV-------VGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATLAEAIPQNQ--------------------TPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFV-RGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVLLYD--DGADDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRM---------HDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECIPSLKAVVQFGINECAWDITHDVALRLL 1932 EV ++ L+MGS D + FM ELG ++P + VL TL AIRE VE VQ+N E L+ L RC Y+TA VVVK RQ+S SEMD+ P+E C+ AA + +ERC RG R ASSDK+E+A + A + L D+ L +A L+ K DL A + E + NQ TPA + A +PK P +SWHV R V+ V+E L++ P +VGLVG SGSGKTT A+ IV R N VR+ F DGVVWL V GA DR P+LM LA + EE+ G P D DG+ +I++ + RG GG + +CL+VAD+VWE +++ +L TGMWVL +TRD LV EG VV VD++S+ EAES+LR A+EL + LP A +IE C R+A L FVGRWSTV+G D W++A + AEM + GE + E + +R A+L+AGF DLA+ + + LYLSLAV+PDGR F K+AAVLLYD A+D AS AA VV LE+W+V+ +RM HDAH+DFAR KL DVR PA+ RW IS+L T+RS + ++ DLW E VGG+ W+ +RPY AL + DS S+ AV +F +E W+ RLL Sbjct: 11 EVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTA-MVERMGTNQAATQEMILANTESIIDRLSKTPAKL--AKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIV--------------------RSNEVRQAFSDGVVWLTVNHGA--KDRLPSLMLQLAHMMCEEVG---GRRPATSD--DGAAYIKEKMQRGHGG--KGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWSTVRGRSDRTAWSDAAGKVRAEMGKIEGERVSGTVVE-TRDARRKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEAS------AAGVVEILERWSVLRSIRGCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLL 656
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 412 bits (1058), Expect = 1.500e-126 Identity = 274/706 (38.81%), Postives = 384/706 (54.39%), Query Frame = 1 Query: 28 GSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATLA-----EAIPQNQTPATVPV------------AAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVP-VDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFN--PLLYLSLAVMPDGRAFGAKEAAVLLYDDGA--DDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRS-TDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECIPSLKAVVQFGINECAWDITHDVALRLLRVQK-DAAVGHAELRHTLESLIHCANALNLNSGADAHRRELSSMVDAA 2073 G+ +D++ F+ E +P++ VL TLKA+ AL +RCTY+T V+V+ R+ SS + PL CVNA F+ERCS+RG R KA+ DK+E+A L R++ L GD+ L +AT+ KV+DLKA L +A+ +QT A + A VP G PA +SWHV R V+ AV + L P++VGLVG SGSGKTT AA IV R VRE F DG+VWL V GA +R ALM HLA+ VFE++ S G P G D DG+ + R ++ +G + +CL+VAD+VWE ++ +L TGMWVL +TRD LV EG VV VD+LS+ +A S+LR A+ELS LP A +++E C R+A + FVGRWSTV+G D W++A + +++ N + V+R A+L+AGF DLA + P LYLSLAV+PDG AF AK+A LLYD +D S +++ LE+W+ + G +RMHDAH+ FAR+ + VR PAV+RW +S+L +RS D F L LW A +GGESWR RPY AL + +S+ + SL+++ F + W D R+L V++ H TL +L++CA L + EL ++ A Sbjct: 6 GTMASDVLAFLTEASDGLPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVRCRKGSSG-LKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIV--------------------RSTEVREAFSDGIVWLSVNDGA--TERLRALMMHLARVVFEDIGGSVGRRPAGLD--DGAAYTRQRMQ-SGHGGKGLKCLVVADNVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGVVVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAFVGRWSTVRGRSDRTAWSDAAHKVRSKIERS----RVSDNVWDIRAVRRKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTE------ELIRTLERWSALRTEGGAYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHPHTILTLRALVYCAERLGNAEEMTEWQAELRRVLPLA 675
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE) HSP 1 Score: 375 bits (962), Expect = 1.040e-110 Identity = 243/621 (39.13%), Postives = 352/621 (56.68%), Query Frame = 1 Query: 1 EVARVALEMGSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATLAEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQM---LRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIER-CDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNG-FNPLLYLSLAVMPDGRAFGAKEAAVLLYDDGADDGASQRRTRQAAKVVANLEQWAVVTMHGD-LFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSE 1845 E AR+ + + V + + E+G PVV + + L + V+ N E L L ERC +T +V+ K + +++S +DV+PL+ CV+ ++ +R +G R + D D++ L AR++++V +GL + + +++D++ LA P+ + +A VP G PA ++WH RD V + VY+ LS G P V L G+SG+GK+T AA +V K ET DQ + RL RVR F DGVV+LRVG+G G+ADR P LM LAK + E++ AP + G ++++ + T KRCL+VADDVWE ++ +L+ TGMWVL TTR P +VE EG V VDQL+ AEAE +LRGAAEL G L A ++++ C +A + FVG WS V+ +DD WAEAVS I+ + + +A+ + + VKR+ ILRAGF L + G LY+++AV PDG AFG +AAVLL D D A + A++ + LE+WAV+TM+ +RMHD H DFAR+K++ DVR P VRRW IS L D + L D+W A E VGG+ W RPY L S+ S+ Sbjct: 91 ETARLGIS--TVVESVATGIIEIGAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGDDIQRLRARIEAIVPIMGLAGVVNIMDRLEDVRQILARLQPRPRPK----LAPVPPGLPAGEAWHAVRDHVEDEVYKILS-GDEPAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAPEAGEK--GESYVKKMMTRT-----KKRCLVVADDVWEPPVVAKLKETGMWVLLTTRFPEIVEPNEG--VDVDQLTPAEAEDVLRGAAELPRGQRLCDPAMQVLDDICGFVAMDIAFVGSWSMVRHTDDSGAWAEAVSKINDTIVDVREDADGMNDSQ----VKRLGILRAGFDYLGEEEGTLAQKLYVAIAVFPDGYAFGVSDAAVLLNDTHPPDPAPHHM-KVASRAIEILERWAVLTMNASGKYRMHDTHMDFARDKIRDQGDVRKPVVRRWTSRISRLDFAVGRDVYALSDIWRAVEWVGGDGWFDLRPYDKELVSMGSDCSK 690
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 350 bits (899), Expect = 7.990e-103 Identity = 249/644 (38.66%), Postives = 340/644 (52.80%), Query Frame = 1 Query: 1 EVARVALEMGSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATL-----------------AEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFV-RGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDE-GLPEVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVLLYD--DGADDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRM---------HDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDS 1836 EV ++AL+MGS D + F+ +L ++P N E L+ L RC ++T V+VK RQ+S SEMDV+P+E C+ AA + +ERC RG R ASSDKD++A + A + L ++ L +A L+ K DL+AT+ E I + A +PK P +SWHV R VV V+E L++ P +VGLVG SGSGKTT A+ IV R +E DR P+LM LA V+EE+ G P D DG+ +I++ + RG GG +CL V D+VWE +++ EL GMWVL +TRD LV EG VV V++LS+ EAES+LR AAEL + LP A +IE C R+A L F GR STV+G D W++A S + EMS GE E + + +R A+++AGF DLA + + LYLSLAV+PDGR F K+AAVL+YD A+D AS AA VV LE+W+ + +RM HDAH+DFAR KL DV PA+ RW IS++ T+R+ + E+ DLW E VGG+ W+++RPY AL + DS Sbjct: 11 EVTKLALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEECLEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIV---------RSNE--------------------------------DRLPSLMLQLAHMVYEEIG---GRRPATSD--DGTAYIKERMHRGHGGEGL--KCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAWSKAASKVRTEMSK--GECEGVRGTVVETRDARRKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEAS------AAGVVEILERWSALCSIRGCYRMAWRGSHYVLHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGDGWKITRPYEAALAGLEDS 579
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 319 bits (818), Expect = 1.730e-91 Identity = 236/647 (36.48%), Postives = 326/647 (50.39%), Query Frame = 1 Query: 505 VPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVR-GTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVLLYDDG--ADDGASQRRTRQAAKVVANLEQWAVVTMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECIPSLKAVVQFGINECA--WDITHDVALRLLRVQK-DAAVGHAELRHTLESLIHCANALN-LNSGADAHRRELSSMVDAAWEERSHTANSPPRLVAEQLLERGQQLAITRRPDEAHEAISEALRIQQDGGGDFERLEISATLEFLAIVLVDLKRYNEGVEVYQRCLRIKENLYGHEHLRLTVTLHNLAVCALKRG 2418 VPKG PA +SW+V R V++ V+E L+S P++VGLVG SGSGKTT A+ V R V+E F DG+ WL V GA +R +LM LA+ V+E++ S G P D D + +IR ++ GTGG + +CL+VAD+VWE +++ +L TGMWVL +TR+ LV G VV VD+LS+A+A S+LR AAEL +P A +IE C R+A L FVGRWSTV+G D W++AVS + EM + G +A + + +R AILRAGF DLA + + LYLSLAV PDG AF ++AAVLLYD A+D AS A VV LE+W V+ +RMHDAH+ FAR L VR PAV+RW IS L +RS+D + L LW A E VGG+ W SR Y AL + D + + + E W+ RLL ++K H + + SL CA L + AD +E+ ++ A +S T + + D A+ S A + + G +R + L +R L I+E GHE + + TL+ L +C + G Sbjct: 36 VPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESV--------------------RSTEVQEAFSDGIAWLSVNDGA--KERLSSLMLQLARVVYEDIGCSVGRRPTSSD--DCAAYIRQRMKKGTGG--KKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAFVGRWSTVRGRQDRMAWSDAVSKVREEMGKV-GSGDASEKLAETRDARRKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEAS------VAVVVDTLERWTVLRSEQGAYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGM-DRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADHYHVLKSYRSLASCAEQLGQVGEAADWRGKEVEALPLALARVQSQTDSGKVEGL-----------------DGANGLASVASTMLKFKPGSIDRAQAEVLL--------------------RRSLEIQEAALGHEDIAVADTLYQLGICLREAG 611
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE) HSP 1 Score: 327 bits (838), Expect = 3.590e-91 Identity = 218/587 (37.14%), Postives = 310/587 (52.81%), Query Frame = 1 Query: 64 ELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEERCTYVTARVVVKWRQNSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATLAEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGSTFIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSD----DEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPE-VKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAVLLYDDGADDGASQRRTRQAAKVVANLEQWAVV-TMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPY 1806 E+G PVV + L + V+ N E L+ L ERC +T +V+ K + + +S +DV PL+ CV+ ++ ER RG R + D +++ L R++ +V +GL + K+D + A L P PV PK P +S+HV RD VV+ V + L P + L G SG+GKTT AA++VGE R +RVR F DGVVWL VGR AG+ADR P+LMS+LAK + E++ AP G D G +++R V + RCL+VADDVWE ++++LR TGMWVL TTR P + E E V+ D L AEAE +LRGAAEL G L A+ K++E C R+A FVG W++V+ ++ + W V + A++ + G+ + E + R+A+LRAGF + ++ LY+ LAV P+G FG +AAVLL ++ G ++ LE+W V+ T + +R HDAH DFAR KL D+R PAV RW IS L + F L+ +W A E VGG+ W RPY Sbjct: 32 EIGASAPVVAPLCTALLKAKGVVDAASRNKEELEELHERCEMITIQVIDKAKASKTSTIDVKPLQECVDKLKEVAERYHDRGRLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGVVNNGEKLDQILARL------QPGPKLAPV---PKKAPFTKSFHVVRDGVVDRVCKILGGDGGPAMAALTGGSGAGKTTSAAAMVGE------------------RGDRVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMKGAVDAPTGDD---GVSYVRKIV-----SQEKLRCLVVADDVWEASVVQKLRETGMWVLLTTRFPEMGEPEERVVM--DTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTTNGVPKSNKAWERTVEELTAQIDHVRGQMKVGNTGEDNDRAINRLAVLRAGFKYIGREDPLAQELYVKLAVFPEGFLFGESDAAVLLENEEVAKGP-----------ISILERWGVLRTDASEKYRTHDAHADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPMWRALEEVGGKGWWALRPY 570
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 292 bits (748), Expect = 1.370e-84 Identity = 220/593 (37.10%), Postives = 303/593 (51.10%), Query Frame = 1 Query: 118 IREKVETVQSNMEGLKALEERCTYVTARVVVKWRQ-NSSSEMDVAPLESCVNAAEDFIERCSQRGWCGRCTKASSDKDELAALNARVDSLVGDVGLVALATLDAKVDDLKATLAEAIPQNQTPATVPVAAVPKGKPAEQSWHVARDRVVNAVYEHLSSGQMPQVVGLVGRSGSGKTTCAASIVGEPKGVSSRRQSETGDQMLRRLNRVREHFRDGVVWLRVGRGAGSADRAPALMSHLAKTVFEELAHSYGFAPGGHDPRDGST---FIRDFVRGTGGAARPKRCLIVADDVWEVDILEELRHTGMWVLFTTRDPRLVERVEGSVVPVDQLSKAEAESLLRGAAELSTGSSLPSAAAKIIERCDRMANHLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEAEAQKNDEGLPEVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVLLYDDGADDGASQRRTRQAAKVVANLEQWAVV-TMHGDLFRMHDAHTDFARNKLKKSEDVRAPAVRRWRGFISTLATVRSTDYFELVDLWHATETVGGESWRVSRPYHVALDSIPDSSSECIPSLKAVVQ 1875 +RE VETV + L ALE+RCTY+TA ++ K+R + S +V+PLE CV AE F+ER +R ++ + EL LA + +D L + A VP+G P +SWHV R V V E L+ P++VGLVG SG+GKTT AA +V R N VRE F DG+VWL V GA R P+LM LA+ V E++ G GGH G +I+ + G + +CL VAD+VWE +++ L TGM VL +TR LV G V +D+LS +AES+LR AAEL LP A +I+ C R+A L FVGRWSTV+G D W++A + + AE++ + G+ +G +R AIL+AG DLA + + LYLSLAV+PD + +AA+LLYD D A + A+V+ LE+W+V+ + + MHD ++FAR L DVR A+RRW G+IS+L TVRS + L W E VGGE W + P AL + D S+ AV + Sbjct: 1 MRETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKRTMEQMVQNQAAARKEL------------------LANQEIIIDRLPKP------------PIKKAYVPQGTPTRKSWHVER-HVTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELV--------------------RSNVVRESFSDGIVWLTVNYGANK--RLPSLMLQLARMVQEDI----GGRVGGHPNESGGNADAYIKQRME-NGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTVLLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVDLIDLCGRVAMDLAFVGRWSTVRGRHDRVAWSDAAAKVRAEIAKIEGD----DIVDGARGNRRKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAALLLYDR--DPTAEDEES--VARVLDVLERWSVLRSTWAYKYYMHDVQSEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGEGWDETHPCETALAEMDDPEPLLQESIAAVAK 527 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.520.1 >prot_C-linearis_contig10.520.1 ID=prot_C-linearis_contig10.520.1|Name=mRNA_C-linearis_contig10.520.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=872bp MGSTVADIVEFMHELGGEVPVVGAVLITLKAIREKVETVQSNMEGLKALEback to top mRNA from alignment at C-linearis_contig10:1738980..1742038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.520.1 ID=mRNA_C-linearis_contig10.520.1|Name=mRNA_C-linearis_contig10.520.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3059bp|location=Sequence derived from alignment at C-linearis_contig10:1738980..1742038+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1738980..1742038+ >mRNA_C-linearis_contig10.520.1 ID=mRNA_C-linearis_contig10.520.1|Name=mRNA_C-linearis_contig10.520.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5232bp|location=Sequence derived from alignment at C-linearis_contig10:1738980..1742038+ (Chordaria linearis ClinC8C monoicous)back to top |