mRNA_C-linearis_contig10.509.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-22_003720.1
Exons	5
Model size	1199
Cds size	906
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927336.0322983-UTR-C-linearis_contig10:1588186..1588351	1622927336.0322983-UTR-C-linearis_contig10:1588186..1588351	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1588187..1588351 -
1690879633.925247-UTR-C-linearis_contig10:1588186..1588351	1690879633.925247-UTR-C-linearis_contig10:1588186..1588351	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1588187..1588351 -
1622927336.0943854-UTR-C-linearis_contig10:1592471..1592599	1622927336.0943854-UTR-C-linearis_contig10:1592471..1592599	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1592472..1592599 -
1690879633.980893-UTR-C-linearis_contig10:1592471..1592599	1690879633.980893-UTR-C-linearis_contig10:1592471..1592599	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 1592472..1592599 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927336.0431497-CDS-C-linearis_contig10:1588351..1588592	1622927336.0431497-CDS-C-linearis_contig10:1588351..1588592	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1588352..1588592 -
1690879633.9345648-CDS-C-linearis_contig10:1588351..1588592	1690879633.9345648-CDS-C-linearis_contig10:1588351..1588592	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1588352..1588592 -
1622927336.051951-CDS-C-linearis_contig10:1589114..1589245	1622927336.051951-CDS-C-linearis_contig10:1589114..1589245	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1589115..1589245 -
1690879633.9437106-CDS-C-linearis_contig10:1589114..1589245	1690879633.9437106-CDS-C-linearis_contig10:1589114..1589245	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1589115..1589245 -
1622927336.0671399-CDS-C-linearis_contig10:1590074..1590254	1622927336.0671399-CDS-C-linearis_contig10:1590074..1590254	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1590075..1590254 -
1690879633.9522479-CDS-C-linearis_contig10:1590074..1590254	1690879633.9522479-CDS-C-linearis_contig10:1590074..1590254	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1590075..1590254 -
1622927336.0772953-CDS-C-linearis_contig10:1590661..1590792	1622927336.0772953-CDS-C-linearis_contig10:1590661..1590792	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1590662..1590792 -
1690879633.9603-CDS-C-linearis_contig10:1590661..1590792	1690879633.9603-CDS-C-linearis_contig10:1590661..1590792	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1590662..1590792 -
1622927336.0858297-CDS-C-linearis_contig10:1592248..1592471	1622927336.0858297-CDS-C-linearis_contig10:1592248..1592471	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1592249..1592471 -
1690879633.9706147-CDS-C-linearis_contig10:1592248..1592471	1690879633.9706147-CDS-C-linearis_contig10:1592248..1592471	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 1592249..1592471 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.509.1	prot_C-linearis_contig10.509.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig10 1588352..1592471 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig10:1588187..1592599-
coding sequence from alignment at C-linearis_contig10:1588187..1592599-

protein sequence of mRNA_C-linearis_contig10.509.1

>prot_C-linearis_contig10.509.1 ID=prot_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPV
EAPFAQSARAWRSGGDRKIMFDNRGGAALTPEALRPMALVAILHVCSWLL
LATGMFQIVVSKLGDFRFPLHWVGVLLMLLGLVTILVRVYTNRCGTKPDW
AGFIAVFTGAACMASWLLADGPLYRRVKAAERCTDENVFELCGIDEVYED
EFSQENLADTNKCVCQVASGAWDLCVDFTSDCENIPGNRRYLLMSLVTLW
IGLGLSFVVAVVSMRVVASTYDAGAIAEAREKERVKEKAASASAPTAPFG
V*

mRNA from alignment at C-linearis_contig10:1588187..1592599-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig10.509.1 ID=mRNA_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4413bp|location=Sequence derived from alignment at C-linearis_contig10:1588187..1592599- (Chordaria linearis ClinC8C monoicous)
TGCCGCCCGCCGCCCCCTCACCGAGATCCACTCAAAGACAGATTACGCGG
TAGTCGTGCGTTACAACCTCCCTCCCTCCTTCCACGGCGAGGGCCTCGCG
ACTCTTAGAGCTCCTTCTATCGACCAGGATGAAACCACCTCAGACTCCCA
CGCGCGCCGGCGGGCAAGGAGCGGGGCGCTCGAAGGGGCCTGCTCCTAGA
ACGCCGAGCGTCAACCGCCTCGCGGTCGCCGAGAGAGGAGTCGGGGCGAG
GGTGGAGCGCGGCGAGGCGGCGCCCGTCGAGGCGCCGTTCGCGCAGAGCG
CTCGGGCGTGGAGGTCAGGTGGAGACCGGAAGATCATGTTCGACAACCGA
GGTGAATCTGTCTTGATGTGTATGTGATCGAGCTTGGAAAATACCGTAGA
AAATATGAAAATACAGCAAGCGCAGAGAGAGAGAGCAGAGTTAAGAGTTT
TGACATGATAGACTAAGGGTTTTGAGCGAGGTCAAAAAAATCGCCAGCGG
GTTTGTTTGAGCTGGGGGGGATGGTGTTGGTCCCAGAAGGCCGAACGTCT
GGCTTGGTGCACGCCACCTTGTGCCTAGGAGCCGTAGTGCCCCATCGTGT
TAGCTGCTGCTCTGCTCTCTGCTGCCGGAGTATTTATAAGGCCTCATCTT
TTATTATTATCCAAAAGGCGTACAATAGTCTACCGGACGAGGGTGTTGGG
TGGTACGCTCCCAATTAATTCGAGCCTGCTGCATCCCACCGATTTTCCTT
ACGTAGTATCTGGCAAGCCTTTTCTGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTGTGGACATATTGCTGTCATACTTGGTTCGAATCCCGGCGCAA
GCGACTTTTTCTCACACAAAGTGAGTTTTTTCTCTCGCTTTCGTTCCGTG
GAAAGCGCTTATTAGTTTGTGTGTGCACTTGAGGGAGAGACGGCTGAAAC
TCTCTTGCGTTAAAAAAAAACAGGCAAGCACCGCAGAAGGTGGGCGGGGG
CCTCAGGGAGAGGGGCCTTCTGTGTGACCACGGTTCAGATGTTCCGGCAA
GATGCCCCGCGTGGCAGGGCGCCTCTGCGAACTCTGGAAATGAATGTGAA
GACGAAAATAAAGAAAAAAAAGCACAGCAGTGATAGCCGGTCGCCCCCGT
AGTCTAGTTGGTAAACCGCACACCTTTCTAGCGCCCAGGCCACGGGTTCG
AATCCCGGCGTATTCGATGTTTTCTCACAAAAACAAACGTGCAAACGTGA
GTTTTGCTCTCAAGTACGTCCCTGCCTGTGGTTCGGTTGTGGAAAGCGCT
ACGTAGTCGTGTGTACACAGAGGAGAGATTGCCGCGCTCTTCTCGCATTA
AAAATCGAAGGCGAAGCACCGCAGGAGGGGAGGGTGGGGGGCCTCAGGGA
GAGGAACCCTTCTGCGTGACCACGGGCTAGAGCTCCTATCCGGCAAAGTG
AGCTCTGGTTATATGTGAAGATTAAAAAAAAAATGATCGTAAAACGAAGA
GGTCAAGATCAAAGAGTCAAATCAGGTTAAAGCGGAGCCGGTGCTCATCT
GCAAATATATGTGCCCCCCCGGTTGCCTTCAAGAGCTAGAAAACCAGCCG
AGAATTCCTCACACGCAAGTAAAGTAGCTTGATGCACATAGCTTGTCTAT
CTATTAACCTCGGGTGGTACAGCAGTAAACTGCATGCCCGTTTGTTGTGT
GGTGTCCTTTGTTGCTCGTGTTGGCGAAGCAGCGCCAACCCCGCGTACTG
CCTGTACCCGTTAACGTTCGTTACCTTCTCGTGTTTTGGCATCATTATCA
TTCATAGGTGGGGCTGCCCTCACCCCGGAGGCCCTCCGCCCGATGGCGCT
GGTGGCGATCCTTCACGTGTGCTCGTGGCTGTTGCTGGCGACAGGGATGT
TTCAAATCGTCGTGTCCAAGTTGGGCGACTTCAGATTTGTGAGAGATATT
TGCCGCGCAGCAGCATCAATCTACAGTATGTACATACATCGCTCCGACCC
TGCGCTAGAGAGCACTGACAGTACACGCGAACTACGTAGCCTACATCCAA
GATTGGCTGTTCGCGCTCTCTCAAGAGTGTATCAACGATACGTACGCTGG
GTAGACGTATTTGGAGAGTATGCTAGCAGTTTACATAATACAATATCACT
GGCGTGCAGATAATACTATCCCTTCGTGTGAGTCCGCGGACTTTGGATTG
CTTCCTTGCTCGACCGTTATGTAACCCTTTTCTGCTATTGTGCGCTCTGC
GACCGTCAACCGCCATGCCGATGAACCCGGCCTTGGACCACCGCCACCGC
CAATTCCTCCACTGCGGATGTTGATTCTCGTGTACGGTAACGTAGCCCCT
CCACTGGGTGGGCGTCCTGCTTATGCTCCTGGGTCTGGTGACGATTCTGG
TGAGGGTGTACACGAACCGCTGCGGTACCAAGCCGGATTGGGCGGGGTTC
ATTGCCGTGTTCACCGGGGCGGCGTGCATGGCATCGTGGCTGTTGGCAGA
CGGGCCTCTCTACAGGAGAGTCAAGGTGTGAAGATGGTGTTAAGATGCGC
AGAGCCACGCGCGTATATGCGTCTTCGGAGCGTACGAAGTATGGTTTTAC
TCGTGCGTTCTTGTGGGGATTTGTTGTTGCTGGTGTAGGGAGTGTACGTG
TGCATCCTTCAGGTTTAGATGGTCGTTCGATAGAGATTTCCTCGTGCACT
TCTGAACGCACGGTGTTTGCTCGTGGCTGATCACAGATTTTCGCCGCTGT
AGATACCAGGAATGTGCGACGTACATAGCTGGGTATTCACACAAACCCTT
AAGTGTGGGGACTTGCGTTGCACACATGTCTCTCTCTGAGAAGCCCAATA
GTCATGAAAAAAGTTCTCATTTTCTGCCAAAAAGCCTTCCGCAATGGAAC
GACGCCCAGGGGGGGCGTATGCAGCAAACACCACGCTGCTGTTATCCGCC
CGGCCGGCTGAGCTGTAGTTTTCCACCCGTCACCAATCGCAGAGTCTCCT
ATACCCGCAGCCCCGCGGCCTCAGCCGTAAAGCTTTGATGTGTTCGTGGT
TACTTGATGGTTCTAGTGGCCCTGAACGCTTCGTGTTTTATTGCTTGCAG
TGTACTGATGTCCCGACGCAACCGAATCGGTACAGCAGTATCCGCATCTT
CTCGCCGACCGCAACATTCAAGCAACAAACATGTCGGTGATTTTGGTCTT
TCAATACTCATCAGCGGGCGAGAGTCCCAACCTCTCTGTCGTCTTTCTTC
CGATCGCGGCGTTCATTGCCGCGCACCCGCTCTCGTGTCTGCCGTGTTTT
TGCGTGTGATAACAACCCATTATATGACGTGATACTATATGATATGGTGC
ACAGGCGGCGGAGAGGTGCACGGACGAAAACGTATTTGAGCTGTGCGGGA
TCGATGAAGTTTACGAGGACGAGTTCAGCCAGGAGAACCTGGCTGATACC
AACAAATGCGTCTGCCAAGTGGCCTCGGGGGCGTGGTGAGTGGGCCGCTT
AACGGCGATTCTGTGTGCACTTGGGAGCGTGTAGTTTCTTGTGCGGAAAG
ATCGGCCGCCATGAAGCCAGCAGCCGTAGTAGTAGGTCTAGAAACACCGG
CAGCCGTGGTCACAGCATCCACAGCAACAGCGAGTACGAGTACAACAAGC
CACGAAACCGTTTATGTTCGTTGGGATCTTCTCACAAACCTGCCTGTGGA
GCGCCGAATATAATCGATGGGAGCGTTGGCGTTCACGACCGTGCACGATT
TGTTCGTTCCCCCTCTTTGGAAAAGGCACGACCTCGACTTCCACCAACAT
TTCAAAAATCTGCTCTGTATCTGTGGCCAGCCTTTGACCGCCCCCCCTCC
TCCCTTACTCCCGACCCTTTGTCTCCCCCCGCTTCCCGCCGCCGTCCCTT
TTGCGGGACTGTCAACAACACCGCCCTCATCGAACACCAAACGCCACAAT
GACTAAAACAACGACAACGACAACCTCGTCAACAACACGCGGCCGCACTC
ACTCCAGGGACCTGTGCGTCGACTTCACGTCGGACTGCGAGAACATCCCG
GGCAACCGGCGTTACCTGCTCATGTCGCTCGTGACCCTCTGGATCGGCCT
CGGCCTCTCGTTCGTGGTGGCGGTGGTGTCCATGCGGGTGGTGGCCAGCA
CGTACGACGCCGGGGCGATCGCCGAGGCGCGGGAGAAGGAAAGGGTGAAG
GAGAAGGCGGCGTCGGCGTCGGCACCGACGGCACCCTTCGGGGTGTGAAA
AACTTTCGGTGCAAAAGGGGAGTGTCCCATATGACCCTTATTCCGCTAGA
GACAGCCAGGAACGGAGCACTTCTTCTGTGGGGCGGTAGCCGGGAGGGGG
TCGGGGTTTCGCTGGCCAATTCTGAGAAGAGCTGAGGTGCGACAATGATG
GTGCCAGAGGCGA

Coding sequence (CDS) from alignment at C-linearis_contig10:1588187..1592599-

>mRNA_C-linearis_contig10.509.1 ID=mRNA_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig10:1588187..1592599- (Chordaria linearis ClinC8C monoicous)
ATGAAACCACCTCAGACTCCCACGCGCGCCGGCGGGCAAGGAGCGGGGCG
CTCGAAGGGGCCTGCTCCTAGAACGCCGAGCGTCAACCGCCTCGCGGTCG
CCGAGAGAGGAGTCGGGGCGAGGGTGGAGCGCGGCGAGGCGGCGCCCGTC
GAGGCGCCGTTCGCGCAGAGCGCTCGGGCGTGGAGGTCAGGTGGAGACCG
GAAGATCATGTTCGACAACCGAGATGAAACCACCTCAGACTCCCACGCGC
GCCGGCGGGCAAGGAGCGGGGCGCTCGAAGGGGCCTGCTCCTAGAACGCC
GAGCGTCAACCGCCTCGCGGTCGCCGAGAGAGGAGTCGGGGCGAGGGTGG
AGCGCGGCGAGGCGGCGCCCGTCGAGGCGCCGTTCGCGCAGAGCGCTCGG
GCGTGGAGGTCAGGTGGAGACCGGAAGATCATGTTCGACAACCGAGGTGG
GGCTGCCCTCACCCCGGAGGCCCTCCGCCCGATGGCGCTGGTGGCGATCC
TTCACGTGTGCTCGTGGCTGTTGCTGGCGACAGGGATGTTTCAAATCGTC
GTGTCCAAGTTGGGCGACTTCAGATTTGTGGGGCTGCCCTCACCCCGGAG
GCCCTCCGCCCGATGGCGCTGGTGGCGATCCTTCACGTGTGCTCGTGGCT
GTTGCTGGCGACAGGGATGTTTCAAATCGTCGTGTCCAAGTTGGGCGACT
TCAGATTTCCCCTCCACTGGGTGGGCGTCCTGCTTATGCTCCTGGGTCTG
GTGACGATTCTGGTGAGGGTGTACACGAACCGCTGCGGTACCAAGCCGGA
TTGGGCGGGGTTCATTGCCGTGTTCACCGGGGCGGCGTGCATGGCATCGT
GGCTGTTGGCAGACGGGCCTCTCTACAGGAGAGTCAAGCCCCTCCACTGG
GTGGGCGTCCTGCTTATGCTCCTGGGTCTGGTGACGATTCTGGTGAGGGT
GTACACGAACCGCTGCGGTACCAAGCCGGATTGGGCGGGGTTCATTGCCG
TGTTCACCGGGGCGGCGTGCATGGCATCGTGGCTGTTGGCAGACGGGCCT
CTCTACAGGAGAGTCAAGGCGGCGGAGAGGTGCACGGACGAAAACGTATT
TGAGCTGTGCGGGATCGATGAAGTTTACGAGGACGAGTTCAGCCAGGAGA
ACCTGGCTGATACCAACAAATGCGTCTGCCAAGTGGCCTCGGGGGCGTGG
CGGCGGAGAGGTGCACGGACGAAAACGTATTTGAGCTGTGCGGGATCGAT
GAAGTTTACGAGGACGAGTTCAGCCAGGAGAACCTGGCTGATACCAACAA
ATGCGTCTGCCAAGTGGCCTCGGGGGCGTGGGACCTGTGCGTCGACTTCA
CGTCGGACTGCGAGAACATCCCGGGCAACCGGCGTTACCTGCTCATGTCG
CTCGTGACCCTCTGGATCGGCCTCGGCCTCTCGTTCGTGGTGGCGGTGGT
GTCCATGCGGGTGGTGGCCAGCACGTACGACGCCGGGGCGATCGCCGAGG
CGCGGGAGAAGGAAAGGGTGAAGGAGAAGGCGGCGTCGGCGTCGGCACCG
ACGGCACCCTTCGGGGTGTGAGGACCTGTGCGTCGACTTCACGTCGGACT
GCGAGAACATCCCGGGCAACCGGCGTTACCTGCTCATGTCGCTCGTGACC
CTCTGGATCGGCCTCGGCCTCTCGTTCGTGGTGGCGGTGGTGTCCATGCG
GGTGGTGGCCAGCACGTACGACGCCGGGGCGATCGCCGAGGCGCGGGAGA
AGGAAAGGGTGAAGGAGAAGGCGGCGTCGGCGTCGGCACCGACGGCACCC
TTCGGGGTGTGA

mRNA_C-linearis_contig10.509.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

x 1

POSITION

0