mRNA_C-linearis_contig10.505.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.730e-39 Identity = 90/219 (41.10%), Postives = 129/219 (58.90%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAEL-GVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKT---ELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEI-----QQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVMN 758
M T+L DAA +A LA K+ S A D + FV G ELP +G + K++ +RE VE VQ NR+EL L +RC+ +TAS IVK + SG DV PL+ V F C+++ + E+ ++ ++ E+A L+ RID+L D+GL GIA ++ V ++ +Q QA Q +L N ++DRLP P K A +P+GT K WHVERRHVM+
Sbjct: 1 MVTTLSDAAVEAANLALKMGSTAVDMISFVHRGDGGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKDELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVSDQAAAQKELLANQEIVIDRLPKPPTKKADIPQGTPMRKSWHVERRHVMD 219
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.090e-36 Identity = 86/220 (39.09%), Postives = 126/220 (57.27%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKTELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEI------------QQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHV 752
MA + DA + ++A K+ S AAD ++FVA+LG ELP + P+ ++++ IREKVE V+ N E+L LH+RC+ ITA FIVKC+ + DVAPLE V V FV +++ + + ++ +G+I L R+ L D+ L GIA + K + ++ + Q +L T IL +LP P K+A VPKGT HK WHVERR+V
Sbjct: 1 MAAYVADATGEVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNV 220
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 145 bits (367), Expect = 4.160e-36 Identity = 86/209 (41.15%), Postives = 123/209 (58.85%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKTELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEIQQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVM 755
M + D+AA+A LA +I S +DAV +LG ELP I P+FK++K IR VE V++NREEL L +RC+ ITA F+VKC+ S DVAPL+ V+ F C ++ + + ++ + EIAGL+ +D+LT+D+GL GIA++ +VD++++ L L+ LP KLA VP G K WHVERRH M
Sbjct: 1 MVADISDSAAEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKK-----------TLDRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAM 198
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 122 bits (307), Expect = 4.180e-28 Identity = 78/221 (35.29%), Postives = 119/221 (53.85%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPF-------IGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCK-TELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDE----IQQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVM 755
MA AAA+ +L K+ S D++ F+AELG +LPF + P+ K++ IRE VE VQ+N+EEL L+ RC +TA +VK + + S D+ P+E ++ V C + + + + EIA + I L +D+ L G+A++ + + +++ QA Q IL NT +I+DRL KLAK+PK T K WHVER +VM
Sbjct: 1 MAAKSSGAAAEVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVM 221
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.580e-24 Identity = 79/226 (34.96%), Postives = 117/226 (51.77%), Query Frame = 3 Query: 84 PTNYQ*LVFTQELGEMATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCK-TELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEIQQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVMN 758
PT + V + +MA+S A +A + K+ S AAD V F ELG E+P +G + K++K IR + E VQSN E L L ERC+ +TA IVK + T S +VAPLES V F+ C ++ + ++ E+ L+ R+D LT D+GL GIA + +VD+++ + A ++ T P V +A VP G WHV R V++
Sbjct: 31 PTINKDQVAVAKAEKMASS--GAPEEAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKA-------MLAEVIAQNTM------PASVPVAAVPNGKPVEHSWHVARDRVVD 241
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: A0A6H5KMQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 3.730e-24 Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 144 LDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKTELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEIQ 599
+D A + A ++ S DAV FVAELG LP P+ K++ IREKV+ V SNRE+L L ERC ITA IVK + S DVAPLE ++ V C ++ + ++ GEIA L+ RI L SDMGL GI ++ +++D+++
Sbjct: 104 IDPWTMATKCAREVGSAVVDAVSFVAELGEGLPLFQPVLKTLTAIREKVKTVISNREDLAALGERCVYITACVIVKFRKGSSELDVAPLEDCIRAAGVLVEHCGRRGKLLRVLKASSDRGEIAALNTRIRALESDMGLAGITVVGRKIDDLK 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.505.1 >prot_C-linearis_contig10.505.1 ID=prot_C-linearis_contig10.505.1|Name=mRNA_C-linearis_contig10.505.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIback to top mRNA from alignment at C-linearis_contig10:1551151..1554483- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.505.1 ID=mRNA_C-linearis_contig10.505.1|Name=mRNA_C-linearis_contig10.505.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3333bp|location=Sequence derived from alignment at C-linearis_contig10:1551151..1554483- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1551151..1554483- >mRNA_C-linearis_contig10.505.1 ID=mRNA_C-linearis_contig10.505.1|Name=mRNA_C-linearis_contig10.505.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig10:1551151..1554483- (Chordaria linearis ClinC8C monoicous)back to top |