mRNA_C-linearis_contig10.505.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.730e-39 Identity = 90/219 (41.10%), Postives = 129/219 (58.90%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAEL-GVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKT---ELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEI-----QQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVMN 758
M T+L DAA +A LA K+ S A D + FV G ELP +G + K++ +RE VE VQ NR+EL L +RC+ +TAS IVK + SG DV PL+ V F C+++ + E+ ++ ++ E+A L+ RID+L D+GL GIA ++ V ++ +Q QA Q +L N ++DRLP P K A +P+GT K WHVERRHVM+
Sbjct: 1 MVTTLSDAAVEAANLALKMGSTAVDMISFVHRGDGGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKDELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVSDQAAAQKELLANQEIVIDRLPKPPTKKADIPQGTPMRKSWHVERRHVMD 219
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.090e-36 Identity = 86/220 (39.09%), Postives = 126/220 (57.27%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKTELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEI------------QQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHV 752
MA + DA + ++A K+ S AAD ++FVA+LG ELP + P+ ++++ IREKVE V+ N E+L LH+RC+ ITA FIVKC+ + DVAPLE V V FV +++ + + ++ +G+I L R+ L D+ L GIA + K + ++ + Q +L T IL +LP P K+A VPKGT HK WHVERR+V
Sbjct: 1 MAAYVADATGEVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNV 220
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 145 bits (367), Expect = 4.160e-36 Identity = 86/209 (41.15%), Postives = 123/209 (58.85%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKTELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEIQQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVM 755
M + D+AA+A LA +I S +DAV +LG ELP I P+FK++K IR VE V++NREEL L +RC+ ITA F+VKC+ S DVAPL+ V+ F C ++ + + ++ + EIAGL+ +D+LT+D+GL GIA++ +VD++++ L L+ LP KLA VP G K WHVERRH M
Sbjct: 1 MVADISDSAAEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKK-----------TLDRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAM 198
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 122 bits (307), Expect = 4.180e-28 Identity = 78/221 (35.29%), Postives = 119/221 (53.85%), Query Frame = 3 Query: 129 MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPF-------IGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCK-TELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDE----IQQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVM 755
MA AAA+ +L K+ S D++ F+AELG +LPF + P+ K++ IRE VE VQ+N+EEL L+ RC +TA +VK + + S D+ P+E ++ V C + + + + EIA + I L +D+ L G+A++ + + +++ QA Q IL NT +I+DRL KLAK+PK T K WHVER +VM
Sbjct: 1 MAAKSSGAAAEVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVM 221
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.580e-24 Identity = 79/226 (34.96%), Postives = 117/226 (51.77%), Query Frame = 3 Query: 84 PTNYQ*LVFTQELGEMATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCK-TELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEIQQHSEAQANVQAHILVNTTAILDRLPPPMVKLAKVPKGTLAHKPWHVERRHVMN 758
PT + V + +MA+S A +A + K+ S AAD V F ELG E+P +G + K++K IR + E VQSN E L L ERC+ +TA IVK + T S +VAPLES V F+ C ++ + ++ E+ L+ R+D LT D+GL GIA + +VD+++ + A ++ T P V +A VP G WHV R V++
Sbjct: 31 PTINKDQVAVAKAEKMASS--GAPEEAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKA-------MLAEVIAQNTM------PASVPVAAVPNGKPVEHSWHVARDRVVD 241
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Match: A0A6H5KMQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 3.730e-24 Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 144 LDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIREKVEKVQSNREELIDLHERCSRITASFIVKCKTELSGFDVAPLESLVQDVYTFVTGCQQKSVGAEMWRSGEIEGEIAGLHVRIDQLTSDMGLVGIAMIVKRVDEIQ 599
+D A + A ++ S DAV FVAELG LP P+ K++ IREKV+ V SNRE+L L ERC ITA IVK + S DVAPLE ++ V C ++ + ++ GEIA L+ RI L SDMGL GI ++ +++D+++
Sbjct: 104 IDPWTMATKCAREVGSAVVDAVSFVAELGEGLPLFQPVLKTLTAIREKVKTVISNREDLAALGERCVYITACVIVKFRKGSSELDVAPLEDCIRAAGVLVEHCGRRGKLLRVLKASSDRGEIAALNTRIRALESDMGLAGITVVGRKIDDLK 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.505.1 >prot_C-linearis_contig10.505.1 ID=prot_C-linearis_contig10.505.1|Name=mRNA_C-linearis_contig10.505.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp MATSLLDAAAQAEELAGKILSGAADAVEFVAELGVELPFIGPIFKSIKNIback to top mRNA from alignment at C-linearis_contig10:1551151..1554483- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.505.1 ID=mRNA_C-linearis_contig10.505.1|Name=mRNA_C-linearis_contig10.505.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3333bp|location=Sequence derived from alignment at C-linearis_contig10:1551151..1554483- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1551151..1554483- >mRNA_C-linearis_contig10.505.1 ID=mRNA_C-linearis_contig10.505.1|Name=mRNA_C-linearis_contig10.505.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig10:1551151..1554483- (Chordaria linearis ClinC8C monoicous)back to top |