mRNA_C-linearis_contig10.497.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A6H5KL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL54_9PHAE) HSP 1 Score: 554 bits (1428), Expect = 6.460e-195 Identity = 275/361 (76.18%), Postives = 311/361 (86.15%), Query Frame = 1 Query: 220 RQSATSLRGRVDSARAEELLAGLGFNVDDSSSPPFVTKGAGAG-GRKRKRPRGD-AGVQDPDRATSTAAGGAAGNKKDDLGFLEAADYGVPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAADLETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLREDLTGRYPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSAGREPDPEDKWSYGDWVGDL 1296
R+ AT LRGRVDSA+AEELLAGLGFNVD+ + +KG G GR+RKR G+ ++D + A + + + L FLEAAD+ VPAEDRLAFERNGH TR VFSS+QL AL+PS+ +AFELQEMNALRQKVSVWFGD+ A++LETAPQLRARLKRL PEEVPFLQVFNMFRKDGP R+TIER+VLSPRLA++AAQLLGC+R+RLYQDSTFCKRPGDG TRWHSDLNMAPLDCNDFVTAWIPLE +PA+++GGSPLVFASRSHRDFALNHW+DSRLREDLTGRY ++DHAPLA GDITWHHGWTLH SPGN R+T RVALAVSYFRDGT LLSD+AGR PDPEDKWSYGDWVGDL
Sbjct: 23 RREATRLRGRVDSAKAEELLAGLGFNVDEEAR----SKGNGQQRGRRRKRAGGNNEAIRDAEWAPTAPRA----DIQKGLTFLEAADFDVPAEDRLAFERNGHAVTRGVFSSKQLNALRPSIVQAFELQEMNALRQKVSVWFGDDDASELETAPQLRARLKRLTPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGCQRLRLYQDSTFCKRPGDGQTRWHSDLNMAPLDCNDFVTAWIPLEEIPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETRRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDL 375
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: D7FZY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY1_ECTSI) HSP 1 Score: 359 bits (922), Expect = 5.180e-121 Identity = 163/186 (87.63%), Postives = 176/186 (94.62%), Query Frame = 1 Query: 739 MFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLREDLTGRYPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSAGREPDPEDKWSYGDWVGDL 1296
MFRKDGP R+TIER+VLSPRLA+VAAQLLGC+RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLE VPA+++GGSPLVFASRSHRDFALNHW+DSRLREDL+GRY ++DHAPLA GDITWHHGWTLH S GN R+T RVALAVSYFRDGT LLSD+AGR PDPEDKWSYGDWVGDL
Sbjct: 1 MFRKDGPFRETIERVVLSPRLAHVAAQLLGCQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLSGRYREKDHAPLAAGDITWHHGWTLHSSLGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDL 186
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A835YLJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ4_9STRA) HSP 1 Score: 282 bits (722), Expect = 2.080e-88 Identity = 146/314 (46.50%), Postives = 183/314 (58.28%), Query Frame = 1 Query: 448 DLGFLEAADYGVPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAADLETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHS----------------------DLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLREDLTGRYPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSAGREPDPEDK---------WSYGDWVGDL 1296
D+ FL A V + L FER GH+ TR +FS++++ L P + F E++AL+QKV+V G+ A +A L L++L P+E+PFLQVFNM+R G + LV S RLA AA LLGC+ VR+YQDSTF KR GDGPT WHS DLNMAP D ND VTAW+PL + A +DGGS LVFASRSHRDFALN+WQD +EDL+ RY + + PGD +WHHGW LH + GN RVA VSY DG R+L + A P+ E WSY DW+ D
Sbjct: 33 DMNFLNVAQP-VTCAEMLKFERGGHLLTRGLFSAQEMALLSPHIMAGFRALELSALQQKVTVLLGEGAAPPGASAEDLLVLLRQLPPDEIPFLQVFNMWRTPGAHAAAVSALVRSRRLARHAAALLGCQAVRVYQDSTFVKRSGDGPTNWHSGINAQLWAAAAAPLRRHERNRGDLNMAPFDTNDMVTAWLPLTHIAACEDGGSGLVFASRSHRDFALNYWQDPHAQEDLSERYDETPQLAMEPGDCSWHHGWVLHSANGNDTPETRVAFTVSYIADGARMLGEGAEHYPEQEXXXXXXXXXXTWSYSDWIADT 345
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A7S2SR24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR24_9STRA) HSP 1 Score: 252 bits (644), Expect = 1.330e-76 Identity = 143/292 (48.97%), Postives = 173/292 (59.25%), Query Frame = 1 Query: 454 GFLEAADYGVPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAAD------LETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHW-QDSRLREDLTGRYPK--RDHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSAGREPD--PEDKWSYGDWVGDL 1296
G AA +P + LAFER GH+ATR + S++++ +L+ V AF +E A V GDE D LET + L+ E +PFLQVFN +R+D + V PRLA VAAQLLG RVRLYQDS F KRPGDG TRWHSDL+MAP D ND VT WIPL+ VPA++DGG+ L FAS SHRDFAL W + +D + RY H L PGD TWHHGW LH SP N R+AL VS+ DG RL D A E D ED+ SY DWV ++
Sbjct: 73 GLTFAAAPALPTDTVLAFEREGHIATRGLLSTQEMASLRGPVEEAFRRREFEAWFHSARVMLGDENLVDDFGLPLLETTEECIEALEAHGCE-LPFLQVFNSWREDP----AVAEFVCGPRLAAVAAQLLGVSRVRLYQDSMFLKRPGDGATRWHSDLHMAPFDTNDLVTCWIPLDPVPAQEDGGTGLTFASGSHRDFALAFWSRPHETGKDFSARYDDCLASHGALDPGDATWHHGWVLHSSPPNDSPDRRLALTVSFVADGARLR-DEAHHEVDIDDEDRTSYEDWVSEV 358
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: R1DNY2_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNY2_EMIHU) HSP 1 Score: 234 bits (596), Expect = 6.910e-70 Identity = 138/274 (50.36%), Postives = 160/274 (58.39%), Query Frame = 1 Query: 499 LAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAADLE----TAPQ-LRARLKRLAPE-EVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQ-DSRLREDLTGR-YPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSAGREPDPEDKWSYGDWVGDL 1296
L FER GHV TR + AL V R + +E ALRQKV V GD+ A E +P LR L+ PE VPF+Q+FN++R + + L SP LA AA LLG +RVRLYQDS F KRPGDGPT WHSDL+MAPLD N FVT W+PL V A DGGS LVFAS SHRD ALN W D R D + R YP RD L GD TWHHGW LH + N D R A+AVS++ DG L A R ED S W+GD+
Sbjct: 2 LEFERTGHVRTRKLLPGAATSALSKEVDRLYTERESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWR----TSPMVHELWRSPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWHGDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFYADGASRLQ-GALRSQHDEDAESCVAWLGDV 270
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A7S2GNK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNK7_9STRA) HSP 1 Score: 233 bits (594), Expect = 8.300e-70 Identity = 135/287 (47.04%), Postives = 168/287 (58.54%), Query Frame = 1 Query: 475 YGVPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVW-------FGDETAADLETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLR-EDLTGRYPKR--DHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSA---GREPDPEDKWSYGDWVGDL 1296
Y + E L FERNGH+ TR + ++++++ +V AF L E +A RQ V FG + E A RA L+ E+PFLQ N++R D P + I R + AAQLLG + VRLYQDS F KR DGPTRWHSDL+M+PLD N VT W+ L+ VP+++DGGS L FAS SHRDFAL D R DLT RY + DH L PGD TWHHGWTLH SP N D+ R+A VS+ DG R+L A G D ED+ SY DW+ DL
Sbjct: 37 YPLSVERVLEFERNGHICTRCLLEDSEVKSVKQTVESAFLLLEPDAWRQSARVMLEGVEDDFGLPLVKNFEDAADCRAVLEE-HDVELPFLQAMNLWRND-PKVEAIVR-----KFGKTAAQLLGVESVRLYQDSVFYKRVDDGPTRWHSDLHMSPLDTNSMVTMWLALDHVPSQEDGGSALTFASGSHRDFALAFHYDPRDETNDLTERYAEALCDHGELRPGDATWHHGWTLHSSPPNELDSPRLAFTVSFIADGARILGAEALKSGETIDDEDRASYEDWLCDL 316
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A4D9CRB8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRB8_9STRA) HSP 1 Score: 230 bits (586), Expect = 5.040e-68 Identity = 122/268 (45.52%), Postives = 161/268 (60.07%), Query Frame = 1 Query: 451 LGFLEAADYGVPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAADLETAPQLRARLKRLA-PEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRL--REDLTGRYPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTARVALAVSYFRDGTRLLSDSAGR 1245
L LEA +P L++ER GH TRS+ +SE+L+ V AFE +++ A RQKV V G E D +T + ++ P+ VPFLQ FN +R+ + + RL L+ R A VAA+LL RVRLYQDSTF KR GDGPT WHSDLNMAP N+ VT W+PL +P ++GG+ L+FAS SHRDFAL+ W+D+R R DL GRY + + GD TWHHGW LH S N + R+A + + DG +L G+
Sbjct: 108 LPSLEAPYPPIPTTQLLSWEREGHTLTRSLCTSEELKDYAKVVRAAFEREKLAAFRQKVRVLLGPEAFQDCQTLEECEEVMEEYVDPDAVPFLQTFNGWRQF----QDVRRLALAKRFARVAAELLNVPRVRLYQDSTFLKRVGDGPTLWHSDLNMAPFHTNEAVTMWLPLTPIPPEEEGGTGLLFASGSHRDFALSFWEDARGGGRRDLEGRYALDSYGRMEVGDATWHHGWCLHSSGPNDLEEDRMAFTLCFVADGAEMLEGGEGK 371
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A1Y1IJL8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJL8_KLENI) HSP 1 Score: 220 bits (560), Expect = 3.550e-64 Identity = 131/281 (46.62%), Postives = 157/281 (55.87%), Query Frame = 1 Query: 481 VPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAADLETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLREDLTGR-YPKRDHAPLAPGDITWHHGWTLH-GSPGNSRDTARVALAVSYFRDGTRLLSDS-AGREPDPEDKWSYGDW-----VGDLA 1299
V + L FER GHV R + E +E + A QE+ A R +V+V A+ + Q A L A +E+ FLQ+FN+ R +T+ LV SPRLA VAA LLG +VRLYQD F K+PG G T WHSDLNM PLD N FVT WIPL A+ G L+FAS SHRDF+L +WQD EDL R Y DH L GD T HHGW LH SP AR AL++SYF DG R+L A R+P ED WS+ W GDLA
Sbjct: 77 VSLKQLLQFERTGHVLVRQLVPEEAMEECAEEIWAAAREQELEAYRHRVAVLCPGVDASSVSNIEQALAVLAEHATDELGFLQMFNLHRYS----RTVRELVTSPRLARVAADLLGASKVRLYQDCLFLKQPGFGATNWHSDLNMVPLDTNAFVTLWIPLRAMDEDDSG---LLFASGSHRDFSLAYWQDLEGMEDLERREYLLEDHGALDLGDATCHHGWCLHYASPQPEDSDARAALSISYFADGARVLDTRHARRKPHDEDAWSFRGWRQALREGDLA 350
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: A0A383W4J6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W4J6_TETOB) HSP 1 Score: 214 bits (544), Expect = 3.060e-62 Identity = 120/280 (42.86%), Postives = 160/280 (57.14%), Query Frame = 1 Query: 481 VPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGD--ETAADLETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLREDLTGRYPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTA-RVALAVSYFRDGTRLLSDSAGREPD-----PEDKWSYGDWVGDL 1296
+P L FER G V T+ + +QL+ ++ + + + +++ ALR +V V D + + + Q A +++ E+ FLQ FN+ R +G I LV S +LA AAQLL K++RLYQD F K PG T WHSDL MAPLD NDFVTAWIPL V +G S L+FA SHRDFAL W D + R+ YP +D P+ GD++WHHGWTLH +P DT R+ALAVSYF DG RLL+ + ED SYG W+ +
Sbjct: 51 LPDRSLLQFERKGWVLTQGLLPQQQLQQVKGCIEQVVQQRKLEALRHRVRVLCSDCQDQLGSIRSEAQALALIQQHGSSELGFLQFFNLHRSEG----LIAELVRSKQLAATAAQLLAAKKLRLYQDCVFLKEPGYAETNWHSDLRMAPLDANDFVTAWIPLRPVGGA-EGDSGLLFAEGSHRDFALPFWHDLKGRDLGDRSYPLQDAGPMQVGDVSWHHGWTLHCAPPQPPDTPQRLALAVSYFADGARLLARKRDKSVHRHMLHDEDAESYGGWLAGM 325
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Match: Q01H68_OSTTA (Phytanoyl-CoA dioxygenase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01H68_OSTTA) HSP 1 Score: 213 bits (541), Expect = 3.640e-61 Identity = 115/275 (41.82%), Postives = 159/275 (57.82%), Query Frame = 1 Query: 481 VPAEDRLAFERNGHVATRSVFSSEQLEALQPSVARAFELQEMNALRQKVSVWFGDETAADLETAPQLRARLKRLAPEEVPFLQVFNMFRKDG-PSRKTIERLVLSPRLANVAAQLLGCKRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDSRLREDLTGRYPKRDHAPLAPGDITWHHGWTLHGSPGNSRDTA-RVALAVSYFRDGTRLL-SDSAGREPDPEDKWSYGDWVGDL 1296
V E++L +ER GHV R ++ + +V + + A R +VSV D +L+ + + LK+ + E+V FLQ FN+ R + P+R+ I +S + A +AA+L+GC+R R+YQ F K PG T WHSDLNM PLD NDFVT WIPL ++ + + L FA+RSHRDFAL +W+ DL GRY + L GD+T HHGW LH SP +D+ R AL+V YF DG R L ++ R P ED+WSY W+ DL
Sbjct: 111 VTLEEQLHYEREGHVCIRRAVEGVEMIPMVKAVTGEIIARRLEAYRHRVSVLCPDARTTELKDVEECKRALKKHSQEDVGFLQTFNLHRNESSPAREYI----MSKQFAKIAAELMGCERARIYQSCVFVKEPGMAETNWHSDLNMVPLDTNDFVTLWIPLRSLD---EDDAALHFANRSHRDFALPYWRTIEGMSDLEGRYEIDTYDELDLGDLTAHHGWALHWSPPQPKDSVPRYALSVCYFADGARRLETEELRRTPHAEDEWSYETWLRDL 378 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.497.1 >prot_C-linearis_contig10.497.1 ID=prot_C-linearis_contig10.497.1|Name=mRNA_C-linearis_contig10.497.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=434bp ELTNARIVEEQMIKKTRMVAARVAFATATTALLSGVDYLRPPTGGQDFHSback to top mRNA from alignment at C-linearis_contig10:1465855..1476547+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.497.1 ID=mRNA_C-linearis_contig10.497.1|Name=mRNA_C-linearis_contig10.497.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10693bp|location=Sequence derived from alignment at C-linearis_contig10:1465855..1476547+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1465855..1476547+ >mRNA_C-linearis_contig10.497.1 ID=mRNA_C-linearis_contig10.497.1|Name=mRNA_C-linearis_contig10.497.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2604bp|location=Sequence derived from alignment at C-linearis_contig10:1465855..1476547+ (Chordaria linearis ClinC8C monoicous)back to top |