mRNA_C-linearis_contig10.494.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.494.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI) HSP 1 Score: 317 bits (812), Expect = 1.820e-83 Identity = 441/1134 (38.89%), Postives = 509/1134 (44.89%), Query Frame = 2 Query: 65 VPRRIYGGATEAF-APEGGDNDGRASMSHKTKSTEDYSVDDWGPDFVGGIVLTPKTGGPGSTWGRAQEALEECDDEVTDDSCAADFGCRSSSNPQRAPSTHSSPDRHTTSGMMMHGAPLPPAHHRAQDHAAAAFDVRDEDDQSAWSAPELSLELSTTXXXXXXXXXCSGNMVRGHRRTCAMIPSAVTRIGSRRMMSIXXXXXXXXXXXXXXXXXXXXXXXXXNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRRTRGFQTISKEEYTPMYVPTAWLNPKSNRWEPVDGYAVDMSGFGASEDGDXXXXXXXXXXXXXXDGNKGSDLEKSLSDPGSSMLRGPNRAA----ESTPPPXXXXXXXXXXXXXVPGDGSGRVGWGVGEEGMRNERTGSLN------RPPLSRDRSGQSMSSSAXXXXXXPTSQGRS-RRRAGAFEDRLVAFHLGPATRKHLANSVQAHDEAMMRFLGEQGYARAKREGAARLLRLPGVAAIAAEDASASPGKRRQPSHKRGSGGELS-GRGSSDARSSGGXXXXXXXXXXXXXXXXXXXXXXXEQGTPPSRTGRNHPNPAARLFPGTAPGPELASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPLRSRKGSGAPTAPVKGTSP-FQGRVSVPPPISTRR--TSPYSSRRGV-------------------PSVSPAGETKRHTGAAGGASPGSS---GRSPAAAAANRRRRSPASCSSRGASPKMSXXXXXXXXXXXXXXXXXXAEGGXXXXXXXXXXXXXAGSAASPTGAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNASTGSPDRAVRRPSNSSGSRRXXXXXXXXXXXXSASTQRGTPDAPVRSSSLRRDASGGAGTQQRLRSEDAAALSASSASGAGGATRSGGRGSACSALPSRLSSRVLRSPPRRDLGGDPIT--RRATIASPPMSPRAVRLQRTSSSGRMSSWR---PAGRSWARAGGXXXXXXXXXXVHDSRRGGAEVGVGEXXXXXXXXXXXXXERERAARRLERFRYTAEFAANTVKERFSLFGGRTSAEVPFTGDL--RRGHRRRRSGGESST 3331
+ RRIY +TE APEGG+ND R S SH+TKSTEDYSVDDWG DFVGGIVLTPKTGGPG+ WGRAQ+ALEE D+E D T G+ D R D++ S E + S++ G RR GS+ RRP+RTRGFQTIS EYTPMYVPTAWL+PKS+RW+PVDGYAVDMSGF DG+ G N A + PPP G GR G GEEG + R G RP LSR S S+SSSA P+SQ R RR + FEDRL AF LGPA R+HLA S QAHDEAM FLGEQGYARAKREGAARLLR+PGVAA+AA++ A+ R+P + SGG G+GS+ +SSG XXXXXXXXXX P R+G++ A G++ G AXXXXXXXXXXXXXXXX XXXXX XXXX T P R RK +P K S +G V P + R+ T+ ++ RG S SP K G A P + GR+ + A R RRS + S A+ XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX S +G G G+ RA + GS AS+ T + VR+++ +RLRS A G GG++ SG G P R SS VLRS PRR LG T RRATIASPPMSPRAVRL R +SSGRMS+WR PA GG V D+RR VG ERERAARRLERFRY AEFAANTVKERFSLFGGR SAEVPFTGDL R GH+RRRSGGE+ST
Sbjct: 1645 ISRRIYQRSTEEGPAPEGGENDARTSASHRTKSTEDYSVDDWGADFVGGIVLTPKTGGPGTMWGRAQDALEEGDEETDD-----------------------------TDGL---------------DETRTLLLKRRGGDEAVASGREDAGWGSSSGEDAADGGDGDGGETPVQRRR-----------GSK----------------------------------------------------------LRRRPKRTRGFQTISLAEYTPMYVPTAWLDPKSHRWKPVDGYAVDMSGF-------------------DPDGSSGGGXXXXXXXXXXXXXXLSNAVAGNVSRNNPPP---------------GAEGGRAG---GEEGRQGARVGGGRAEGLGARPSLSRGASAVSVSSSAGTWAGTPSSQERGCRRPSRGFEDRLAAFQLGPAARQHLAKSEQAHDEAMALFLGEQGYARAKREGAARLLRMPGVAAVAADEEEANASLNRKPLKRGSSGGXXXPGKGSTSTKSSGARXXXXXXXXXX-----------------PRRSGQSVGGGAGT---GSSRGSSPQQAXXXXXXXXXXXXXXXXGTAVPSTPPRVSPYAARGRAKKSAAASSSGXXXXXGTPXXXXATPT-PGRRRKAGAREFSPKKTVSQRTEGGRRVSPGVKGRQGATAGAAAERGARIGNRXXXXXXXXXXXXXXXSRSPVLAPKTDDGFDAEAKPAAGRTLGRTGSKDADGRSRRSRSDSSVGMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASGNG-------------------------------------------TPQYGAAGRAPIGSRGTPGSSSRQRGRNADVTAAPASSPSSTTEPAVRAAA------------ERLRSSGA---------GRGGSSSSGTPGGVS---PPRASSHVLRSLPRRSLGFGSATAARRATIASPPMSPRAVRLCRAASSGRMSAWRRRVPASERLRTGGGGR--------VQDTRRA-----VGGVSAEAEAAAVATAERERAARRLERFRYMAEFAANTVKERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEAST 2527
BLAST of mRNA_C-linearis_contig10.494.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE) HSP 1 Score: 275 bits (702), Expect = 1.990e-70 Identity = 422/1093 (38.61%), Postives = 496/1093 (45.38%), Query Frame = 2 Query: 194 DFVGGIVLTPKTGGPGSTWGRAQEALEECDDEV--TDDSCAADFGCRSSSNPQR-APSTHSSPDRHTTSGMMMHGAPLPPAHHRAQDHAAAAFDVRDEDDQSAWSAPELSLELSTTXXXXXXXXXCSGNMVRGHRRTCAMIPSAVTRIGSRRMMSIXXXXXXXXXXXXXXXXXXXXXXXXXNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRRTRGFQTISKEEYTPMYVPTAWLNPKSNRWEPVDGYAVDMSGFGASEDGDXXXXXXXXXXXXXXDGNKGSDLEKSLSDPGSSMLRGPNRAAESTPPPXXXXXXXXXXXXXVPGDGSGRVGWGVGEEGMRNE--RTGSLN-RPPLSRDRSGQSMSSSAXXXXXXPTSQGRS-RRRAGAFEDRLVAFHLGPATRKHLANSVQAHDEAMMRFLGEQGYARAKREGAARLLRLPGVAAIAAEDASASPGKRRQPSHKRGSGGELSGRGSSDARSSGGXXXXXXXXXXXXXXXXXXXXXXXEQGTPPSRTGRNH--PNPAARLFPGTAPGPELASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPLRSRK--GSGAPTAPVKGTSPFQGRVSVPP-------------------PISTRRTSPYSSRRGVPSVSPAGETKRHTGA---AGGASPGSSGRSPAAAAANRRRRSPASCSSRGASPK--MSXXXXXXXXXXXXXXXXXXAEGGXXXXXXXXXXXXXAGSAASPTGAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNASTGSPD---RAVRRPSNSS---------------------------GSRRXXXXXXXXXXXXSASTQRGTPD-APVRSSSLRRDASGGAGTQQRLRSEDAAALSASSASG--------------AGGATRSGG--RGSACSALPSRLSSRVLRSPPRRDLGGDPIT--RRATIASPPMSPRAVRLQRTSSSGRMSSWRPAGRSWARAGGXXXXXXXXXXVHDSRRGGAEVGVGEXXXXXXXXXXXXXERERAARRLERFRYTAEFAANT 3220
DFVGGIVLTPKTGGPG+ WGRAQEALEE D+E TD G +SN Q APSTH S +R T + AP PP AA + D+QSAWSAPEL L + XXXXX T AM +++TR GS+ + + RRP+RTRGFQTIS EYTPMYVPTAWL+PKS+RW+PVDGYAVDMSGFG XXXXXXXX D +K+LSD + L G N PPP G GR G +G R R SL RP LSR S S+SSS P+SQ R +R + FEDRL AF LGPA +HLA S QAHDEAM FLGE+GYARAKREGAARLLR+PGVAA+AA++ A+ R+P + GG RGS+ RSSG +GT ++ R +PAARL TAP S XXXXXXXXXXXXXXXXXXXXXXX TP RS + G G T ++G+SP Q + P P + R SPY++R G K+ + A G++ G+ G S A RRR + SR SPK +S A G A + P + XXXXXXXXXXXXXXXX TGS D R+ R S+SS XXXXXXXXXXXX ++ GTP + R + LR + G+ ++QR R+ D A ASS S + GA R G RGS P R SS VLRS PRR LG T RRATIASPPMSPRAVRL RT+SSGRMS+WR ++ R G V D+RR AE GV ERERAARRLERFRY AEFAANT
Sbjct: 1529 DFVGGIVLTPKTGGPGTMWGRAQEALEEGDEETDGTD-------GLDDTSNHQHGAPSTHGSSNRPTLQHEGIFSAPAPPL-------VAARASLDPGDEQSAWSAPELILSDGSDVGERXXXXXXXXXX------TYAM--TSMTRFGSKHRLLLKRWGGEKAVASGREDVEWGPSSGED-------AADGGDGDRGGTPVQRRRGSKLHRRPKRTRGFQTISLAEYTPMYVPTAWLDPKSHRWKPVDGYAVDMSGFGPEGSSGEGXXXXXXXXH---------DQKKNLSDAVAENLPGNN------PPP---------------GADGGRAAGAEGRQGARGGGGRAESLGARPSLSRGASAVSVSSSVGTWAGTPSSQERGCKRPSRGFEDRLAAFQLGPAALQHLAKSEQAHDEAMTLFLGEKGYARAKREGAARLLRMPGVAAVAADEQEANASLNRKPLKRGSGGGGGPTRGSTSTRSSGAKGRG--------------------KGTSRAKPAREKGGSSPAARL---TAPSSRRPSVRXXXXXXXXXXXXXXXXXXXXXXXASGVGKG-------------------------------TPRRSGQSVGGGTGTGSLRGSSPQQALRASPASARKTAXXXXXXXXXGTAVPSTPPRVSPYAAR---------GRAKKSSAAXXXGAGSTSGTPGSSSATPTPGRRRMA----DSREVSPKEAVSQGTHGSRRVSPGVKGRQRATAG-------------AAAEGGPWIGNRXXXXXXXXXXXXXXXXXSRSPVPTPKTESGFDAEVKPAAGHTLGRTGSKDADGRSRRSHSDSSVGMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGNGTPQHSAARRAPLRSRGAPGSSSRQRGRNADVTAAPASSPSSTTEPAVRTAAERLRSSGAGRGGSSSRGSPGGVSPPRASSHVLRSLPRRSLGFGSATAARRATIASPPMSPRAVRLHRTASSGRMSAWRRRVQASERLG-----IGGGGRVQDTRR--AEGGVSAEAKAAAVATA---ERERAARRLERFRYMAEFAANT 2472 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.494.1 >prot_C-linearis_contig10.494.1 ID=prot_C-linearis_contig10.494.1|Name=mRNA_C-linearis_contig10.494.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1115bp MVPRRIYGGATEAFAPEGGDNDGRASMSHKTKSTEDYSVDDWGPDFVGGIback to top mRNA from alignment at C-linearis_contig10:1439873..1450974- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.494.1 ID=mRNA_C-linearis_contig10.494.1|Name=mRNA_C-linearis_contig10.494.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11102bp|location=Sequence derived from alignment at C-linearis_contig10:1439873..1450974- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1439873..1450974- >mRNA_C-linearis_contig10.494.1 ID=mRNA_C-linearis_contig10.494.1|Name=mRNA_C-linearis_contig10.494.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6690bp|location=Sequence derived from alignment at C-linearis_contig10:1439873..1450974- (Chordaria linearis ClinC8C monoicous)back to top |