mRNA_C-linearis_contig10.490.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A6H5KM04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM04_9PHAE) HSP 1 Score: 353 bits (906), Expect = 2.120e-115 Identity = 206/332 (62.05%), Postives = 247/332 (74.40%), Query Frame = 3 Query: 18 FSEQTQLEEMKRAIMLAALPLAWAAS--PAFVHPT-------ALTANRPKLGDVSATSSAIAPQPCCRLAKN--QQQRRRGRQLEASLGGAGSPSAASAVVSSASAVLAWSPTALVAVVGVLFAASVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVRPFSAPE 980
F + + MKRA +L +PL +AS AFV P A T NRP+L +++SSA A R A++ +QQR+RGR L ASLGG G P A+ V+SS S V++W +VG L AAS+ N LQG DLG T +KILGVPAEEATA+HV++LGKAGFMQLF+AS CP GDLDGEYRARTL MG+LHP+T IITHR++GPGRWLGKGIRTGS EGYNLF A ES+G G LPSDT+RER F+FSQ+SDSVFDRG SS LDY++AG +NGPLFGGMRDEVRKVNDKLF+GLGYI+ GGKYNSAPF++EGPPV FS+P+
Sbjct: 30 FQPRLKQGSMKRAFVLTVVPLVSSASLAAAFVCPAPATATSAAFTPNRPRLAGDASSSSASATIAPLRPARDLHRQQRQRGRHLVASLGG-GVPEVAAVVISSTSYVVSW-------LVGTLVAASIANFLQGRPYSDLGLTPDKILGVPAEEATADHVARLGKAGFMQLFYASQCPVTGDLDGEYRARTLNMGVLHPITAIITHRIWGPGRWLGKGIRTGSREGYNLF-----ASESKGIG-LPSDTQRERCFRFSQSSDSVFDRGVSSELDYARAG-KNGPLFGGMRDEVRKVNDKLFIGLGYIQAFGGKYNSAPFVMEGPPVGEFSSPD 346
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: D7FZY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY5_ECTSI) HSP 1 Score: 305 bits (780), Expect = 8.440e-97 Identity = 186/306 (60.78%), Postives = 215/306 (70.26%), Query Frame = 3 Query: 45 MKRAIMLAALPLAWAAS--PAFVHPT-------ALTANRPKL-GDVSATSSAIAPQPCCRLAKNQQQR-RRGRQLEASLGGAGSPSAASAVVSSASAVLAWSPTALVAVVGVLFAASVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNS 929
MKRA +L LPL +AS AFV P A T NRP+L GD SA+S +RGR L ASLGG G P A+ VVSS S+V++W +VG L AAS+ N LQG DLG T +KILGVPAEEATA+HV++LGKAGFMQLF+AS CP GDLDGEYRARTL MG+LHP+T IITHR++GPGRWLGKGIRTGS EGYNLF+ G G GLPSDT+RER F+FSQ SDSVFDRG SS LDY++AG +NGPLFGGMRDEVRKVNDKLF+GLGYI+ G N+
Sbjct: 1 MKRAFVLTVLPLVSSASLAAAFVCPAPATATSAAFTPNRPRLAGDTSASSXXXXXXXXXXXXXXXXXXXQRGRHLVASLGG-GVPEVAAVVVSSTSSVVSW-------LVGALVAASIANFLQGRPYRDLGLTPDKILGVPAEEATADHVARLGKAGFMQLFYASQCPATGDLDGEYRARTLNMGVLHPITAIITHRIWGPGRWLGKGIRTGSREGYNLFT-----GSEAKGIGLPSDTQRERSFRFSQFSDSVFDRGVSSGLDYARAG-KNGPLFGGMRDEVRKVNDKLFIGLGYIQAFGDTGNN 292
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A5K7Z8H1_9DELT (Uncharacterized protein n=1 Tax=Desulfosarcina widdelii TaxID=947919 RepID=A0A5K7Z8H1_9DELT) HSP 1 Score: 146 bits (369), Expect = 8.010e-35 Identity = 90/200 (45.00%), Postives = 116/200 (58.00%), Query Frame = 3 Query: 366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPP 956
+N LQ G G G + E+ILGVP E+AT + +L K+ MQLFH++T P DL GEY+A+ L +GI+ P T FGPGRWLGKG + + GYNLF E EG G + R R K S + SVFDR S +LDYS GP+ G MRDE+RK+N LF+G+GY+ GG N PF++ G P
Sbjct: 306 INILQNGSSGWDGRSMEQILGVPPEQATLADIERLSKSEVMQLFHSATPPTLSDLQGEYQAKNLAVGIMAPAADFYTQHFFGPGRWLGKGFTAEAAQNGQGYNLFQ------EKEGDGTI----WRTRRMKTSVGT-SVFDRKESFKLDYSVY--NKGPVHG-MRDELRKINPALFIGMGYMPIGGGSINPGPFVVYGNP 491
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A7C1GQ52_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C1GQ52_9DELT) HSP 1 Score: 131 bits (329), Expect = 9.280e-32 Identity = 80/211 (37.91%), Postives = 111/211 (52.61%), Query Frame = 3 Query: 360 SVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVRPFSAPEG 983
+++N LQ G+ G G + E+ILG+ E+AT + + +L KA MQLFHA+ PD ++GEYRA L +GIL P TH FG G W GK + GYN+FS +G + +R +F + S DR + LDYS N + M DEVR++ND LF+ +G++ GG N APF+L GPP EG
Sbjct: 22 TIINILQNGLGGYKGRSVEEILGISPEKATLKDIQRLTKAQVMQLFHAAPAPDFASMNGEYRAELLPLGILAPSAAFYTHHFFGSGHWEGKAFFPFEDQRGWGYNIFSKKG------------TLSRMRKFNSYC--GPSTIDRKPAFHLDYSP---HNSGIVHSMHDEVRQINDHLFICMGHMALGGGAVNPAPFVLMGPPTPWIGCSEG 215
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A2N2F743_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-9 TaxID=2013759 RepID=A0A2N2F743_9DELT) HSP 1 Score: 124 bits (311), Expect = 2.390e-29 Identity = 81/202 (40.10%), Postives = 107/202 (52.97%), Query Frame = 3 Query: 366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGI---RTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVR 962
+N LQ G + D G + EKILGV E+AT + KLGKA QL++A+T P D +GEY A TL++GI+ TH FGPGRW GK GYN+F G T R R ++ S D + +L+Y G+ N MRDE+RK+ND LF+GLGY+ GGK N APF++ GP +
Sbjct: 13 INILQKGGKYD-GRSMEKILGVAPEKATINDIKKLGKAEVFQLYYAATAPSFQDFNGEYTAATLDVGIMATSAEYYTHHFFGPGRWEGKAFYPFEKNKGYGYNIFKDATGK------------TYRTRKMD-TEIGLSDHDGKPAFKLNY---GAYNSGTVNSMRDELRKINDNLFIGLGYMALGGGKINPAPFLVIGPATK 197
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A2N1TA87_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-1 TaxID=2013832 RepID=A0A2N1TA87_9SPIR) HSP 1 Score: 124 bits (312), Expect = 2.640e-29 Identity = 81/199 (40.70%), Postives = 106/199 (53.27%), Query Frame = 3 Query: 366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQ-NSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEG 950
VN LQ G+ G G T ++ILGV AE+AT + KL K+ MQLF+A+ P G + GEY+A+T+ +G++ TH FGPG W GK + GYNLF+ + G TR R K + S D S LDYS NG L M DEVRK+ND+LF+ +G++ GG N APFIL G
Sbjct: 24 VNILQNGIGGWDGRTVDQILGVSAEKATPADIEKLSKSEVMQLFYAAPAPAFGTMKGEYKAKTISVGVMAASADYFTHHFFGPGHWEGKAFFPFEKDKGWGYNLFTVKNSDGT----------TRIARTRKMNNWVGKSTMDDRDSFHLDYSPY---NGGLVKSMHDEVRKINDRLFICMGHMAAGGGAINPAPFILYG 209
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A3A4Q0Y7_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4Q0Y7_9DELT) HSP 1 Score: 120 bits (301), Expect = 1.100e-27 Identity = 82/207 (39.61%), Postives = 111/207 (53.62%), Query Frame = 3 Query: 366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGR------WLGKGIRTG---SPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASS-RLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPP 956
+N LQ G + G T +ILGV E A + V KL + MQLF+A+ PD L+GEY A+ L GIL P + + TH VF GR W+GKG + S +GYNLF+ + G +E T R R K + V G S ++DYS ++N + MRDE+R++N+ LF+G GY+ GG N APF L GPP
Sbjct: 24 INILQAGPKIPDGRTMAQILGVAPETAVFDDVEKLSRKDKMQLFYAANTPDIRALNGEYEAKLLSGGILGPSSALFTHHVFPTGRVTPRTRWVGKGFKPNDENSGKGYNLFTRKKPGGTAE--------TLRIRPMKTALAVSKVGKDGKRSFQVDYS---ADNTGMIHSMRDEIRQINENLFIGAGYMALGGGPINPAPFALIGPP 219
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A847ZAA1_9DELT (Uncharacterized protein n=1 Tax=Smithella sp. TaxID=2053614 RepID=A0A847ZAA1_9DELT) HSP 1 Score: 120 bits (300), Expect = 1.110e-27 Identity = 84/208 (40.38%), Postives = 114/208 (54.81%), Query Frame = 3 Query: 345 VLFAASV--VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIR-TGSPEGY--NLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGP 953
+L AA+V +N LQ G D G + E+ILGV ++AT E + KL KA QL++A++ P + GE+ A T+++GIL TH FGPGRW GK TG GY NLF + GG TRR ++ S +D + +L Y G+ N MRDE+R++ND+LF+GLGY+ GGK N APF L GP
Sbjct: 15 ILLAAAVTGINILQKGGAWD-GRSMEEILGVAPQKATLEDIRKLNKAEIFQLYYAASAPSFQEFKGEFAAVTVDVGILASGAAYFTHHFFGPGRWEGKAFNPTGENRGYGYNLF---------QDAGGKIYRTRRMD----TEIGPSDYDGKPAFKLHY---GAYNSGTVHSMRDEIRRINDRLFLGLGYMALGGGKINPAPFALVGP 205
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A2N2HJG1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 TaxID=2013746 RepID=A0A2N2HJG1_9DELT) HSP 1 Score: 117 bits (293), Expect = 1.170e-26 Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 3 Query: 402 GFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGP 953
G T E+ILGV +AT + + KL KA QLF+A+ P D+ GEY A+TL +GIL TH FGPGRW+GK + GYN+FS +G + G + + TR+ + S+ D S LDYS N M DE+R++ND + +G+GY+ GG N APF++ GP
Sbjct: 35 GQTMEQILGVDPAKATDKDIGKLDKAAIFQLFYAAPAPKFEDVKGEYNAKTLPVGILAMSADYFTHNFFGPGRWVGKAFAIAEKDKGWGYNMFSTKG-----KDGSEVIARTRKMNTYL----GKSLIDGKESFHLDYSPY---NSGAVHSMHDELRRINDHIMIGMGYMGLGGGSINPAPFLVIGP 209
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: B8FL22_DESAL (Uncharacterized protein n=3 Tax=Desulfatibacillum TaxID=218207 RepID=B8FL22_DESAL) HSP 1 Score: 116 bits (290), Expect = 1.780e-26 Identity = 76/210 (36.19%), Postives = 107/210 (50.95%), Query Frame = 3 Query: 360 SVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKG---IRTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVRPFSAPE 980
+++ + G +G G + +LGV ATA+HV LG MQLFHA P L+GEY A L++G+L + + I+H +FGPG W GKG ++ GYN+FS + G+G + R R + DR S LDYS N MRDE+R++N LF+G+GY+ G APFIL G P P+ P+
Sbjct: 4 AILERILMGFKGWNGCSMGDVLGVDPNSATADHVRNLGWKEVMQLFHAGITPKMDALNGEYNAEVLDVGVLAFLASFISHNLFGPGHWDGKGFKPLKEARGWGYNIFSGKNGSGPA-----------RVRKMNTRLGMSRIDDRD-SFLLDYSV---HNKGFVKTMRDEIRQINPDLFIGMGYLGEATGPLTPAPFILHGKPS-PWKGPD 197 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.490.1 >prot_C-linearis_contig10.490.1 ID=prot_C-linearis_contig10.490.1|Name=mRNA_C-linearis_contig10.490.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=316bp MKRAIMLAALPLAWAASPAFVHPTALTANRPKLGDVSATSSAIAPQPCCRback to top mRNA from alignment at C-linearis_contig10:1341823..1346643+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.490.1 ID=mRNA_C-linearis_contig10.490.1|Name=mRNA_C-linearis_contig10.490.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4821bp|location=Sequence derived from alignment at C-linearis_contig10:1341823..1346643+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1341823..1346643+ >mRNA_C-linearis_contig10.490.1 ID=mRNA_C-linearis_contig10.490.1|Name=mRNA_C-linearis_contig10.490.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at C-linearis_contig10:1341823..1346643+ (Chordaria linearis ClinC8C monoicous)back to top |