Homology
BLAST of mRNA_C-linearis_contig10.486.1 vs. uniprot
Match: A0A6H5LBA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA6_9PHAE) HSP 1 Score: 147 bits (372), Expect = 8.580e-33 Identity = 94/182 (51.65%), Postives = 109/182 (59.89%), Query Frame = 1 Query: 1 TPMVGECGLVAGCTGSKPLTVITQEELNELGSLHDVDLFVKLSALRLGGLWCRDCHQSFIDATSAGVQQQQ-QQESGRKREFAEISEATPPDPGPTRAGTEQTRELAARELAAMR-DTPPDAAASPLAASAPAEG---------EAAAGPRFTVTSPYPSPREAPSGPNLRTLSLAAENGTG 513
TP VG CGLVAGC G K +T ITQE+LN LGSL DVDLFVKLSALR+GG+WC DCHQ +A S QQQQ Q ESGRKR+ AE P P P A TRE LAAMR +TP DAA++P AA+ E A G ++ ++PYPSP AP L + ENG G
Sbjct: 4 TPAVGPCGLVAGCAGDKQVTFITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAASGSKQQQQLQPESGRKRDHAETMTHERPQPQPLVAPPGDTREPVGHGLAAMRGNTPSDAASTPQAATXXXXXXXXXXXXPVEEADGSTYSDSAPYPSPPAAPEVNLAAALPPSIENGAG 185
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-22_003550.1 |
| Exons | 4 |
| Model size | 2554 |
| Cds size | 1671 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927322.6311376-UTR-C-linearis_contig10:1221023..1221029 | 1622927322.6311376-UTR-C-linearis_contig10:1221023..1221029 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1221024..1221029 + |
| 1690879625.9338248-UTR-C-linearis_contig10:1221023..1221029 | 1690879625.9338248-UTR-C-linearis_contig10:1221023..1221029 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1221024..1221029 + |
| 1622927322.6864116-UTR-C-linearis_contig10:1223494..1224371 | 1622927322.6864116-UTR-C-linearis_contig10:1223494..1224371 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1223495..1224371 + |
| 1690879625.9840207-UTR-C-linearis_contig10:1223494..1224371 | 1690879625.9840207-UTR-C-linearis_contig10:1223494..1224371 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1223495..1224371 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927322.6395848-CDS-C-linearis_contig10:1221029..1221287 | 1622927322.6395848-CDS-C-linearis_contig10:1221029..1221287 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1221030..1221287 + |
| 1690879625.942961-CDS-C-linearis_contig10:1221029..1221287 | 1690879625.942961-CDS-C-linearis_contig10:1221029..1221287 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1221030..1221287 + |
| 1622927322.6486568-CDS-C-linearis_contig10:1221413..1222507 | 1622927322.6486568-CDS-C-linearis_contig10:1221413..1222507 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1221414..1222507 + |
| 1690879625.9534173-CDS-C-linearis_contig10:1221413..1222507 | 1690879625.9534173-CDS-C-linearis_contig10:1221413..1222507 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1221414..1222507 + |
| 1622927322.6619117-CDS-C-linearis_contig10:1222554..1222653 | 1622927322.6619117-CDS-C-linearis_contig10:1222554..1222653 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1222555..1222653 + |
| 1690879625.9650629-CDS-C-linearis_contig10:1222554..1222653 | 1690879625.9650629-CDS-C-linearis_contig10:1222554..1222653 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1222555..1222653 + |
| 1622927322.676299-CDS-C-linearis_contig10:1223274..1223494 | 1622927322.676299-CDS-C-linearis_contig10:1223274..1223494 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1223275..1223494 + |
| 1690879625.9746869-CDS-C-linearis_contig10:1223274..1223494 | 1690879625.9746869-CDS-C-linearis_contig10:1223274..1223494 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1223275..1223494 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.486.1 >prot_C-linearis_contig10.486.1 ID=prot_C-linearis_contig10.486.1|Name=mRNA_C-linearis_contig10.486.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=557bp
MVGECGLVAGCTGSKPLTVITQEELNELGSLHDVDLFVKLSALRLGGLWC
RDCHQSFIDATSAGVQQQQQQESGRKREFAEISEATPPDPGPTRAGTEQT
RELAARELAAMRDTPPDAAASPLAASAPAEGEAAAGPRFTVTSPYPSPRE
APSGPNLRTLSLAAENGTGEVLAAAPAGHHATTAAPWAVESAAPTPFAVD
GGGKVEGAGAGTGEKVPTAPALTTTAPWSRQAQEAPPASTAEAAEVAEAA
AAVAAAATAAVAVEAAHQLPLPQHQPPPQLQAALQHHSASVPSQHQLPPP
PPPQQQQQQQQQQQQQQQQHPHPHQQPQQRPNQQNGSLPHLTTPAQQAAV
AGAWVGFSPPGATTITSTAPHAHGENATAPFAPPPPGTGAPTSPTHADAN
AVHGVMATVGGQVAYPQWVATMLPQQHQQHNGRAGGVGHAVGAAAPGRSL
NGGAGSGSGGGGGDGRGRRGGARPRQRCGRDSDWRPAWHGDGAWGRRHRR
RRLLLPGLRGETVLRHEGRQEAVRLRRPPGGGPGRHQAPPGAPQLRLRRL
PGAPPV* back to topmRNA from alignment at C-linearis_contig10:1221024..1224371+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.486.1 ID=mRNA_C-linearis_contig10.486.1|Name=mRNA_C-linearis_contig10.486.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3348bp|location=Sequence derived from alignment at C-linearis_contig10:1221024..1224371+ (Chordaria linearis ClinC8C monoicous)
ACGCCCATGGTAGGCGAGTGCGGGCTCGTAGCCGGGTGCACCGGGAGCAA
GCCGCTCACCGTCATCACCCAGGAGGAGCTGAACGAGCTCGGCTCCCTGC
ACGACGTCGACCTGTTCGTGAAGCTGTCGGCGTTGCGGCTCGGCGGGCTG
TGGTGCAGGGACTGCCACCAGTCGTTCATCGACGCCACTTCCGCGGGCGT
TCAGCAGCAGCAGCAGCAGGAGAGCGGCCGCAAGCGAGAGTTTGCGGAGA
TCTCCGAGGCGACGGTGGTGCACCAGCCGCCGCTGCCGCCGCTTCAGCCG
CCGCGGAGTCAGGCCCCGCCCGGGCATGAATTGCTTCAACAACAGCAGAC
CCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAGCCCCCAGATC
CCGGCCCAACCCGAGCCGGCACCGAACAGACCCGCGAGCTCGCGGCCCGC
GAGCTCGCCGCCATGCGGGACACTCCGCCAGACGCCGCCGCCTCGCCGCT
GGCAGCCTCCGCGCCCGCCGAAGGAGAAGCAGCTGCCGGCCCAAGGTTCA
CCGTTACATCCCCGTACCCGAGCCCGCGCGAGGCCCCGTCAGGACCGAAC
CTCCGGACGCTGTCTTTGGCCGCTGAGAACGGCACCGGCGAGGTGCTCGC
TGCCGCCCCCGCAGGGCATCACGCTACGACTGCAGCCCCCTGGGCTGTGG
AATCGGCGGCACCGACACCCTTTGCGGTTGATGGCGGTGGCAAGGTGGAA
GGGGCGGGGGCGGGGACGGGCGAGAAGGTGCCGACGGCGCCGGCGTTGAC
CACGACTGCGCCGTGGTCTCGGCAGGCGCAAGAGGCGCCGCCGGCGTCGA
CAGCGGAGGCGGCGGAGGTGGCGGAGGCGGCAGCGGCGGTGGCGGCGGCT
GCGACGGCGGCGGTGGCAGTGGAGGCGGCCCACCAGCTTCCCTTGCCACA
GCACCAGCCGCCCCCGCAGCTACAGGCGGCGCTGCAGCACCACTCGGCGT
CCGTCCCTTCGCAGCACCAGCTGCCACCACCACCACCACCACAGCAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACATCCACATCC
ACATCAACAACCACAGCAGCGACCAAACCAGCAGAACGGCAGCCTGCCGC
ACCTCACTACCCCAGCCCAACAAGCAGCGGTGGCCGGCGCGTGGGTTGGC
TTCAGCCCTCCCGGAGCAACCACCATCACCTCCACAGCGCCGCACGCTCA
CGGCGAGAACGCGACCGCTCCGTTCGCCCCCCCGCCCCCGGGCACCGGAG
CCCCTACCTCCCCGACCCACGCCGATGCTAACGCGGTCCACGGTGTCATG
GCCACTGTCGGGGGACAGGTGGCCTACCCGCAATGGGTGGCGACGATGCT
GCCCCAGCAGCACCAACAACACAATGGGCGGGCGGGCGGCGTTGGACACG
CTGTTGGTGCCGCGGCGCCCGGGCGAAGCCTCAAGTCTAGGCTGGCGGGC
CCTCAATCGCCGGAGCTCGGGCCTTCCACAGCGGCGGCGCTGGCAGTGGC
AGCGGCGGCGGCGGCGGGGATGGGCGGGGAAGGCGGGGTGGAGCACGCCC
ACGCCAGCGCTGTGGGAGGGATTCCGATTGGTCACGAGTTGGTCGATATG
GATGGAAGGGCGCTGCAGTACTCCGTCCACTCGTTGTACATGTTGGGGGG
GGCTGGGGGCGCGCTTCCGCCGGAGGTGCGCGAGGGGCCCGGGGCGGCGG
CGGTGGCGAGGGTGGAGGGGCACCACAGACAGAGGTGAAGTGGTGGGGGG
GAGCTGTTGTAGGGGAGGCGTGGCCAAGGTGCTTCTTGGGTTTGGTTATT
TTCTTGTGGACTCGCCTGCATGCAGCGCTGCAGGTTCGCAACAACACCCA
CTGGTAGCGAAGCTAGCCATGCGCTGCTGCCGTCTGTTTCCGTGATTAGC
ATCAGAGGCACAGGCGAATTCCCATCATAAGCATCAGAGAATCAGAGCCC
TGTGACCATACAGCAACCGAACGACGCCCAGAAACCTTTCGGGCCACAAC
CATTGTTCCATGGCCTCCGACCTGGGTGCTGTGCCGGGGTAGCGTAAATT
CGGTTCTCATGCCGCGCGAGGTCACGACACACACCAACCCAACACCAAGG
CTCACGCGACTCTCTCCACACGCACGCGCACGCCCTCCCTTGTCCCGTTT
TTATTCTCTCGCCGTGCCTACACACAACGAAACACAGCGGCCCGAGATTA
GGCGACCCGCCTGGCACGGGGACGGGGCCTGGGGACGCCGCCATCGGCGG
CGACGTCTGCTTCTTCCCGGGCTGCGGGGCGAAACCGTCCTTCGGCATGA
AGGGCGACAAGAAGCCGTCCGCCTGCGCCGACCACCGGGGGGAGGGCCTG
GTCGCCATCAAGCCCCCCCGGGTGCCCCGCAGCTGCGACTTCGGCGACTG
CCTGGAGCTCCCCCTGTTTAACTTCAAGGGGAAGCGGCGGGCGCGGCGGT
GCCGGGCGCACATGCTGGAGGGCATGGTGGACGTCAAGGTGCCCTTCTGC
GAGTACCCCGGTTGCTCGGAGCTGCCGGTGTTCGGGGAGGAGAACGAGAA
GAAGCGACGGCGGTGCCCCCAGCACAGGCTACCGGGAATGGTGGAGGTGA
GAGGGCGGCGGTGCGAGACCGAGGGGTGCACGACCCAGCCGACGTACGGG
GTGCGGGACGCCAAGAAGGCGACACACTGCGCCAAGCACAAGGAGCCCGG
CATGATGAACATCGTGCACAGGCACTGCGCGTTCGAGGGGTGCACGACGC
AGCCATACTACGGGGTGGTGGAAAAACGCGGCGGGACCCACTGCGCGAAG
CACAAGCTGCCCGGGATGGTCAAGACCAAGGGGCAGCGGTGCGGCGAGCC
GGGGTGCTCCACGCGGCCCAGCTACGGCAACGACGGCGACAGAAAGCCCT
CCAGGTGCGGCCAGCATAAGATGCTGGGTATGGTGGACGTCATCAACCGC
CGCTGCGAGGAGCCCGGGTGCATCACGCAGCCGACGCACGCGCTGGAGGG
GACCGCCACCGCCACCCGCTGCTCCATCCACCAGCGTGCCGGGATGATTA
ACGTCAAGTCTCGCCGCTGCGGCTTCGAGGGCTGCAACACCCAGCCGTAC
TACGGCCGCCCGGGGGACAAGAAGGGCTCCCGCTGCTCCAAGCACAAGGA
GAAGGGCATGGTGGACGTCCACAACCGCCGTTGCAGCTTCGAAGGCTGCC
AGGTGTCGGCGTCGTTCGGCATCCGCGAGGCCGGGAAGGGGGCCACGCAC
TGCGCCAAGCACAAGCTGCCGGCGATGGAGTCGCTGTACCGGAGGAAG back to topCoding sequence (CDS) from alignment at C-linearis_contig10:1221024..1224371+ >mRNA_C-linearis_contig10.486.1 ID=mRNA_C-linearis_contig10.486.1|Name=mRNA_C-linearis_contig10.486.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3342bp|location=Sequence derived from alignment at C-linearis_contig10:1221024..1224371+ (Chordaria linearis ClinC8C monoicous)
ATGGTAGGCGAGTGCGGGCTCGTAGCCGGGTGCACCGGGAGCAAGCCGCT
CACCGTCATCACCCAGGAGGAGCTGAACGAGCTCGGCTCCCTGCACGACG
TCGACCTGTTCGTGAAGCTGTCGGCGTTGCGGCTCGGCGGGCTGTGGTGC
AGGGACTGCCACCAGTCGTTCATCGACGCCACTTCCGCGGGCGTTCAGCA
GCAGCAGCAGCAGGAGAGCGGCCGCAAGCGAGAGTTTGCGGAGATCTCCG
AGGCGACGATGGTAGGCGAGTGCGGGCTCGTAGCCGGGTGCACCGGGAGC
AAGCCGCTCACCGTCATCACCCAGGAGGAGCTGAACGAGCTCGGCTCCCT
GCACGACGTCGACCTGTTCGTGAAGCTGTCGGCGTTGCGGCTCGGCGGGC
TGTGGTGCAGGGACTGCCACCAGTCGTTCATCGACGCCACTTCCGCGGGC
GTTCAGCAGCAGCAGCAGCAGGAGAGCGGCCGCAAGCGAGAGTTTGCGGA
GATCTCCGAGGCGACGCCCCCAGATCCCGGCCCAACCCGAGCCGGCACCG
AACAGACCCGCGAGCTCGCGGCCCGCGAGCTCGCCGCCATGCGGGACACT
CCGCCAGACGCCGCCGCCTCGCCGCTGGCAGCCTCCGCGCCCGCCGAAGG
AGAAGCAGCTGCCGGCCCAAGGTTCACCGTTACATCCCCGTACCCGAGCC
CGCGCGAGGCCCCGTCAGGACCGAACCTCCGGACGCTGTCTTTGGCCGCT
GAGAACGGCACCGGCGAGGTGCTCGCTGCCGCCCCCGCAGGGCATCACGC
TACGACTGCAGCCCCCTGGGCTGTGGAATCGGCGGCACCGACACCCTTTG
CGGTTGATGGCGGTGGCAAGGTGGAAGGGGCGGGGGCGGGGACGGGCGAG
AAGGTGCCGACGGCGCCGGCGTTGACCACGACTGCGCCGTGGTCTCGGCA
GGCGCAAGAGGCGCCGCCGGCGTCGACAGCGGAGGCGGCGGAGGTGGCGG
AGGCGGCAGCGGCGGTGGCGGCGGCTGCGACGGCGGCGGTGGCAGTGGAG
GCGGCCCACCAGCTTCCCTTGCCACAGCACCAGCCGCCCCCGCAGCTACA
GGCGGCGCTGCAGCACCACTCGGCGTCCGTCCCTTCGCAGCACCAGCTGC
CACCACCACCACCACCACAGCAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACATCCACATCCACATCAACAACCACAGCAGCGACC
AAACCAGCAGAACGGCAGCCTGCCGCACCTCACTACCCCAGCCCAACAAG
CAGCGGTGGCCGGCGCGTGGGTTGGCTTCAGCCCTCCCGGAGCAACCACC
ATCACCTCCACAGCGCCGCACGCTCACGGCGAGAACGCGACCGCTCCGTT
CGCCCCCCCGCCCCCGGGCACCGGAGCCCCTACCTCCCCGACCCACGCCG
ATGCTAACGCGGTCCACGGTGTCATGGCCACTGTCGGGGGACAGGTGGCC
TACCCGCAATGGGTGGCGACGATGCTGCCCCAGCAGCACCAACAACACAA
TGGGCGGGCGGGCGGCGTTGGACACGCTGTTGGTGCCGCGGCGCCCGGGC
GAAGCCTCAACCCCCAGATCCCGGCCCAACCCGAGCCGGCACCGAACAGA
CCCGCGAGCTCGCGGCCCGCGAGCTCGCCGCCATGCGGGACACTCCGCCA
GACGCCGCCGCCTCGCCGCTGGCAGCCTCCGCGCCCGCCGAAGGAGAAGC
AGCTGCCGGCCCAAGGTTCACCGTTACATCCCCGTACCCGAGCCCGCGCG
AGGCCCCGTCAGGACCGAACCTCCGGACGCTGTCTTTGGCCGCTGAGAAC
GGCACCGGCGAGGTGCTCGCTGCCGCCCCCGCAGGGCATCACGCTACGAC
TGCAGCCCCCTGGGCTGTGGAATCGGCGGCACCGACACCCTTTGCGGTTG
ATGGCGGTGGCAAGGTGGAAGGGGCGGGGGCGGGGACGGGCGAGAAGGTG
CCGACGGCGCCGGCGTTGACCACGACTGCGCCGTGGTCTCGGCAGGCGCA
AGAGGCGCCGCCGGCGTCGACAGCGGAGGCGGCGGAGGTGGCGGAGGCGG
CAGCGGCGGTGGCGGCGGCTGCGACGGCGGCGGTGGCAGTGGAGGCGGCC
CACCAGCTTCCCTTGCCACAGCACCAGCCGCCCCCGCAGCTACAGGCGGC
GCTGCAGCACCACTCGGCGTCCGTCCCTTCGCAGCACCAGCTGCCACCAC
CACCACCACCACAGCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACATCCACATCCACATCAACAACCACAGCAGCGACCAAACCA
GCAGAACGGCAGCCTGCCGCACCTCACTACCCCAGCCCAACAAGCAGCGG
TGGCCGGCGCGTGGGTTGGCTTCAGCCCTCCCGGAGCAACCACCATCACC
TCCACAGCGCCGCACGCTCACGGCGAGAACGCGACCGCTCCGTTCGCCCC
CCCGCCCCCGGGCACCGGAGCCCCTACCTCCCCGACCCACGCCGATGCTA
ACGCGGTCCACGGTGTCATGGCCACTGTCGGGGGACAGGTGGCCTACCCG
CAATGGGTGGCGACGATGCTGCCCCAGCAGCACCAACAACACAATGGGCG
GGCGGGCGGCGTTGGACACGCTGTTGGTGCCGCGGCGCCCGGGCGAAGCC
TCAACGGCGGCGCTGGCAGTGGCAGCGGCGGCGGCGGCGGGGATGGGCGG
GGAAGGCGGGGTGGAGCACGCCCACGCCAGCGCTGTGGGAGGGATTCCGA
TTGCGGCGGCGCTGGCAGTGGCAGCGGCGGCGGCGGCGGGGATGGGCGGG
GAAGGCGGGGTGGAGCACGCCCACGCCAGCGCTGTGGGAGGGATTCCGAT
TGGCGACCCGCCTGGCACGGGGACGGGGCCTGGGGACGCCGCCATCGGCG
GCGACGTCTGCTTCTTCCCGGGCTGCGGGGCGAAACCGTCCTTCGGCATG
AAGGGCGACAAGAAGCCGTCCGCCTGCGCCGACCACCGGGGGGAGGGCCT
GGTCGCCATCAAGCCCCCCCGGGTGCCCCGCAGCTGCGACTTCGGCGACT
GCCTGGAGCTCCCCCTGTTTAAGCGACCCGCCTGGCACGGGGACGGGGCC
TGGGGACGCCGCCATCGGCGGCGACGTCTGCTTCTTCCCGGGCTGCGGGG
CGAAACCGTCCTTCGGCATGAAGGGCGACAAGAAGCCGTCCGCCTGCGCC
GACCACCGGGGGGAGGGCCTGGTCGCCATCAAGCCCCCCCGGGTGCCCCG
CAGCTGCGACTTCGGCGACTGCCTGGAGCTCCCCCTGTTTAA back to top
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