mRNA_C-linearis_contig10.480.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.480.1 vs. uniprot
Match: D7G002_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G002_ECTSI) HSP 1 Score: 471 bits (1213), Expect = 6.690e-152 Identity = 246/377 (65.25%), Postives = 290/377 (76.92%), Query Frame = 2 Query: 215 MPKGGAVAGRAYYLSMFFLLVTVSLGTAFIVLSMASRFFKWKVENC--FAEGPAPAIGPDTYQFNLDLEVDIGWRMFTVTLLDLGAAEAG-CFDDLEQGETYPLGDFQDNSASLAGLGMVASWGLGVLVALYTVIALVRARHGYRRGGASIVALSKWCSLFAIGVVTATTVFWWLVEGKFGKRTQALAPRLFQLTEEAANQCNNGT--DKCRGAEWEMEAPGWALSLGVTAMFAYAAASILLCLIAPRVDHLNSGVEELDVIEPAKPAVVGNVVEKTPQPEEKARAKDRRSAKTGVRAGGGGGRRAPTSTVEG--EPIAGPDPMTYALQQGHDEELGSAEDDEEDEVVYQNHQVHHAVINHSNPNPTQQVDDQASRQ 1324
M K GA+AG Y+++MFFLL T+ LG AFI SM+SRFFKW VE C F G P ++LD+ VDIGWR FTVT LD G G C ++L+QG+TY +GD+QDN+ASLAGLGMVASW LGVLVALYT +AL+ ARHG RRGG S+ L+KWC+LF +G+VTATTVFWWLVEGKFGKR ++LAPRLFQ EE A C+N + D+C A W M+APGWALS+GVTAMFA+ AA+ LL +IAPRVDHLNSG+EE++V EPAKP V V+EKTP PEEK R KDRRSAKTGVRAGG +AP+STV+G AGPDPMTYAL++G DEELGS +D VVYQNHQVHHAVINHSNPNPTQ VDDQ + Q
Sbjct: 1 MAKVGAIAGSMYHMAMFFLLSTIVLGAAFIATSMSSRFFKWSVEGCAAFGNGDVPGSSERIIVYDLDVTVDIGWREFTVTTLDQGTETIGECLEELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTKWCALFTVGLVTATTVFWWLVEGKFGKRQESLAPRLFQRVEEGAKLCSNSSTEDQCNEATWSMDAPGWALSMGVTAMFAFGAATFLLWIIAPRVDHLNSGIEEIEVAEPAKPPVGNIVMEKTPLPEEKTRGKDRRSAKTGVRAGG----KAPSSTVQGGGPADAGPDPMTYALEEGRDEELGSVDDXXXXXVVYQNHQVHHAVINHSNPNPTQMVDDQGASQ 373
BLAST of mRNA_C-linearis_contig10.480.1 vs. uniprot
Match: A0A6H5KKN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN1_9PHAE) HSP 1 Score: 458 bits (1179), Expect = 3.370e-146 Identity = 264/452 (58.41%), Postives = 318/452 (70.35%), Query Frame = 2 Query: 215 MPKGGAVAGRAYYLSMFFLLVTVSLGTAFIVLSMASRFFKWKVENCFAEGPAPAIGPDTY--QFNLDLEVDIGWRMFTVTLLDLGAAEAG-CFDDLEQGETYPLGDFQDNSASLAGLGMVASWGLGVLVALYTVIALVRARHGYRRGGASIVALSKWCSLFAIGVVTATTVFWWLVEGKFGKRTQALAPRLFQLTEEAANQCNNGT--DKCRGAEWEMEAPGWALSLGVTAMFAYAAASILLCLIAPRVDHLNSGVEELDVIEPAKPAVVGNVVEKTPQPEEKARAKDRRSAKTGVRAGGGGGRRAPTSTVEG-EPI-AGPDPMTYALQQGHDEELGSAEDDEEDEVVYQNHQVHHAVI-NHSNPNPTQQVDDQA----------SRQYAXXXXXXTSGGSYVTGGGRSFDE-GQSEFSDAASSQYYVQGQGTGGGSFMSSSSRGESFDEYR 1513
M K GA+AGR Y++++FFLL T+ LG AFI SM+SRFFKW VE C A G G FNLD+ VDIGWR FTVT LD G G C +L+QG+TY +GD+QDN+ASLAGLGMVASW LGVLVALYT +AL+ ARHG RRGG S+ L+ WC+LF +G+VTATTVFWWL+EGKFGKR ++LAPRLFQ EE A C+NG+ D+C A W M+APGWALS+GVTAMFA+ AA+ LL +IAPRVDHLNSG+EE++V+EPAKP V V+EKTP PEEK R KDRRSAKTGVRAGG +AP+STV+G +P AGPDPMTYAL++G +++LGS + NHSNPNPTQ V+D +R Y+ TSGGSY TGGGRSFDE + ++S+ AS G SFMSSSSRGES DEYR
Sbjct: 1 MAKVGAIAGRMYHMALFFLLSTIVLGAAFIATSMSSRFFKWSVEGCSAFGNVAIPGSSDLIVDFNLDMTVDIGWREFTVTSLDQGTETMGECLGELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTNWCALFTVGLVTATTVFWWLIEGKFGKRQESLAPRLFQRVEEGAELCSNGSTEDQCNEATWSMDAPGWALSMGVTAMFAFGAATFLLWIIAPRVDHLNSGIEEIEVVEPAKPPVGNIVMEKTPLPEEKTRGKDRRSAKTGVRAGG----KAPSSTVQGGDPADAGPDPMTYALEEGRNKQLGSVDXXXXXXXXXXXXXXXXXXXXNHSNPNPTQMVEDXXXXXXXXXXXLNRGYSRA----TSGGSYATGGGRSFDERSEGDYSETASXXXXXXXXXXGQ-SFMSSSSRGES-DEYR 442 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.480.1 >prot_C-linearis_contig10.480.1 ID=prot_C-linearis_contig10.480.1|Name=mRNA_C-linearis_contig10.480.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=434bp MPKGGAVAGRAYYLSMFFLLVTVSLGTAFIVLSMASRFFKWKVENCFAEGback to top mRNA from alignment at C-linearis_contig10:1098322..1110314+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.480.1 ID=mRNA_C-linearis_contig10.480.1|Name=mRNA_C-linearis_contig10.480.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11993bp|location=Sequence derived from alignment at C-linearis_contig10:1098322..1110314+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1098322..1110314+ >mRNA_C-linearis_contig10.480.1 ID=mRNA_C-linearis_contig10.480.1|Name=mRNA_C-linearis_contig10.480.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2604bp|location=Sequence derived from alignment at C-linearis_contig10:1098322..1110314+ (Chordaria linearis ClinC8C monoicous)back to top |