Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 905 |
| Cds size | 534 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927322.4607446-UTR-C-linearis_contig10:1000125..1000396 | 1622927322.4607446-UTR-C-linearis_contig10:1000125..1000396 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1000126..1000396 + |
| 1690879625.8768916-UTR-C-linearis_contig10:1000125..1000396 | 1690879625.8768916-UTR-C-linearis_contig10:1000125..1000396 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1000126..1000396 + |
| 1622927322.471805-UTR-C-linearis_contig10:1000439..1000539 | 1622927322.471805-UTR-C-linearis_contig10:1000439..1000539 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1000440..1000539 + |
| 1690879625.8866796-UTR-C-linearis_contig10:1000439..1000539 | 1690879625.8866796-UTR-C-linearis_contig10:1000439..1000539 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 1000440..1000539 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927322.4834087-CDS-C-linearis_contig10:1000539..1000652 | 1622927322.4834087-CDS-C-linearis_contig10:1000539..1000652 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1000540..1000652 + |
| 1690879625.8956933-CDS-C-linearis_contig10:1000539..1000652 | 1690879625.8956933-CDS-C-linearis_contig10:1000539..1000652 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1000540..1000652 + |
| 1622927322.4944515-CDS-C-linearis_contig10:1001592..1002013 | 1622927322.4944515-CDS-C-linearis_contig10:1001592..1002013 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1001593..1002013 + |
| 1690879625.90543-CDS-C-linearis_contig10:1001592..1002013 | 1690879625.90543-CDS-C-linearis_contig10:1001592..1002013 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1001593..1002013 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.472.1 >prot_C-linearis_contig10.472.1 ID=prot_C-linearis_contig10.472.1|Name=mRNA_C-linearis_contig10.472.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=178bp
MGEEGKGKGRTSRGLGSVFPAYTSTTTSCTGASGAHLGFRAPSEFFMDGS
GRRLLVGSRSPTHAAARGALRGVDRRHQHQHFSQELEQERENGQEQQRRR
PVVRLLRMDDPSGAARLLPPSDSSVEAASPPASPAGAAAALQPPVVTTTP
TPTPATGGVVKKEIGTDSGEPREHGGIK back to topmRNA from alignment at C-linearis_contig10:1000126..1002013+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.472.1 ID=mRNA_C-linearis_contig10.472.1|Name=mRNA_C-linearis_contig10.472.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1888bp|location=Sequence derived from alignment at C-linearis_contig10:1000126..1002013+ (Chordaria linearis ClinC8C monoicous)
CAGTAGTCTGTCCTTGCCCCTATTTCGGGATATGTATGTATGTATGTAAT
GGTTGCATCCACTACATGCCCTCGTATACTACGAGATAACAGGGGAGAGG
GCATGCTTCAGGGGTATGACCGAGCTCTGGAGCTAGTGGCGCCGGGGGAA
GCTCAGCGGCGCCTCTGCGCAGCCCACAACAGGGAGTCTCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAGGACCACCTGCCCGCCACCCTCGCACCAACC
AAGCTCTCCGGTCTGTCGGGGGTGGTGGTGGAGGAGATCCGGCCGCGGCG
GCAGTAACAACTTTGGGCGCCGGGGTGACACGCTCTTCTACCCCGTCAAC
AATTGCGGGGGACGGCGGTGCCGCCCTCAGCGGCGAGTCGGACAGGGATA
GTGGCGCGATCGCCATGGGAGAAGAAGGCAAAGGCAAAGGCAGGACCTCT
CGAGGCCTTGGCTCGGTGTTTCCTGCCTACACCTCCACCACCACCAGCTG
CACGGGGGCGTCGGGCGCTCACCTCGGGTATGCAGGGCGAAAAAATCGAC
GGCCGCGTAGTTATGCGTGCTTTTTGTCGCTCCTTGTCCTTTCGGATCGT
GTCGAGAGGAATGACAGATAGGAATGCTCGGATCGTGTCGAGGGGAATGG
CAGATAGGAATGCCTTGACTCCTGGCGCGCGAGAAGGCTTGATGGCCAGC
CAGGCACACAGACATCCCAATGCTTAGTGTGTGATGTTGGTAACACAGGG
AAAAATGCCAAAAAACGAGGTTATACCGCAATATAACGGCTATTTTATTT
ATTTATTCCGAGCACATTAGAGCCGGTCGCCCCGGTGGACTAGATAGTGG
TTTAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCGATTCCAAGCAA
AAGTGTTTCTTTTGCGACTTTGCAGGTGAAAGCGATAAATAGCTGAAAAA
GCTCGTGAGTACCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGATG
GCTGCACCCTTCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGG
TGGGGCAAAAAGAAACAGAAAAAGAAGAAAAAAGCCCCAGTGTTTACCCC
CTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGAAAAATACACTGAAC
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACATGTCTCGCATTG
ATCGGAAAGGGACTGTCGCCACAATAAATGGGACGAAAACACACACACAC
ACATGCGAAACGGAACGAGAAATAGGCCTAAAAAGCAACATGCCTCCTCG
TATTTTGCTCTATTCCTTAGCCGCCTGTGACCCCGCTGCCTTAAACCGTC
GCACAACGAACGCACCCGAAACATTGGCCTCACGTGTACTTATATTGCTC
TCCCGATGCTCTGTTCCTATGGTGCATCCATCTATATATATACCCCCACC
TCCACCTCTCCAAGCAGGTTCCGGGCCCCCAGCGAGTTTTTCATGGACGG
CAGCGGCAGACGGCTTCTAGTCGGATCTCGATCTCCTACCCATGCTGCGG
CGCGAGGAGCCTTGCGCGGCGTTGATCGGCGGCACCAGCACCAGCACTTC
TCACAGGAGCTGGAGCAGGAGCGGGAGAACGGGCAGGAGCAACAACGCCG
GCGGCCCGTGGTGCGACTCCTCCGCATGGACGACCCCTCCGGCGCCGCGC
GTCTTCTTCCTCCCTCCGACTCATCCGTCGAAGCAGCATCACCCCCGGCG
TCACCTGCAGGAGCAGCAGCAGCACTTCAGCCGCCGGTGGTAACTACAAC
ACCAACACCAACACCGGCCACGGGTGGTGTCGTCAAGAAGGAGATCGGAA
CGGACAGCGGGGAGCCCCGCGAGCACGGCGGCATCAAG back to topCoding sequence (CDS) from alignment at C-linearis_contig10:1000126..1002013+ >mRNA_C-linearis_contig10.472.1 ID=mRNA_C-linearis_contig10.472.1|Name=mRNA_C-linearis_contig10.472.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at C-linearis_contig10:1000126..1002013+ (Chordaria linearis ClinC8C monoicous)
ATGGGAGAAGAAGGCAAAGGCAAAGGCAGGACCTCTCGAGGCCTTGGCTC
GGTGTTTCCTGCCTACACCTCCACCACCACCAGCTGCACGGGGGCGTCGG
GCGCTCACCTCGGATGGGAGAAGAAGGCAAAGGCAAAGGCAGGACCTCTC
GAGGCCTTGGCTCGGTGTTTCCTGCCTACACCTCCACCACCACCAGCTGC
ACGGGGGCGTCGGGCGCTCACCTCGGGTTCCGGGCCCCCAGCGAGTTTTT
CATGGACGGCAGCGGCAGACGGCTTCTAGTCGGATCTCGATCTCCTACCC
ATGCTGCGGCGCGAGGAGCCTTGCGCGGCGTTGATCGGCGGCACCAGCAC
CAGCACTTCTCACAGGAGCTGGAGCAGGAGCGGGAGAACGGGCAGGAGCA
ACAACGCCGGCGGCCCGTGGTGCGACTCCTCCGCATGGACGACCCCTCCG
GCGCCGCGCGTCTTCTTCCTCCCTCCGACTCATCCGTCGAAGCAGCATCA
CCCCCGGCGTCACCTGCAGGAGCAGCAGCAGCACTTCAGCCGCCGGTGGT
AACTACAACACCAACACCAACACCGGCCACGGGTGGTGTCGTCAAGAAGG
AGATCGGAACGGACAGCGGGGAGCCCCGCGAGCACGGCGGCATCAAGGTT
CCGGGCCCCCAGCGAGTTTTTCATGGACGGCAGCGGCAGACGGCTTCTAG
TCGGATCTCGATCTCCTACCCATGCTGCGGCGCGAGGAGCCTTGCGCGGC
GTTGATCGGCGGCACCAGCACCAGCACTTCTCACAGGAGCTGGAGCAGGA
GCGGGAGAACGGGCAGGAGCAACAACGCCGGCGGCCCGTGGTGCGACTCC
TCCGCATGGACGACCCCTCCGGCGCCGCGCGTCTTCTTCCTCCCTCCGAC
TCATCCGTCGAAGCAGCATCACCCCCGGCGTCACCTGCAGGAGCAGCAGC
AGCACTTCAGCCGCCGGTGGTAACTACAACACCAACACCAACACCGGCCA
CGGGTGGTGTCGTCAAGAAGGAGATCGGAACGGACAGCGGGGAGCCCCGC
GAGCACGGCGGCATCAAG back to top
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