mRNA_C-linearis_contig10.469.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE) HSP 1 Score: 197 bits (501), Expect = 5.680e-53 Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 2 Query: 164 VAGVVPSPNRVYYVVDPKEVMAQNQSFMCPFLARSPQLLVPGMLKATFSTKSNRLCSVHFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLVAPKGG 490
VAGVVPSPNRVYYVVDPKEVM NQ+FMCPFLARSPQLLVPGMLKA+FSTKSNRLCSV FSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSL+A KGG
Sbjct: 498 VAGVVPSPNRVYYVVDPKEVMGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGG 606
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Match: D7G007_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G007_ECTSI) HSP 1 Score: 179 bits (453), Expect = 2.130e-47 Identity = 103/138 (74.64%), Postives = 113/138 (81.88%), Query Frame = 2 Query: 272 QLLVPGMLKATFSTKSNRLCSVHFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLVAPKGG-MPNPARSSSS-----------TARSPASTSAPALVGQDEGVLHSVLQDIREWRVSSTVVDDPSE 649
+LLVPGMLKA+FSTKSNRLCSV FSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSL+A KGG +P+ AR +S TA +P P VGQDEGVLHSVLQDIREWRVSSTV+DDP++
Sbjct: 310 ELLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPSAARDRASESSGAXXXXXXTAANP-----PPFVGQDEGVLHSVLQDIREWRVSSTVLDDPNQ 442
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Match: A0A6H5KJS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS4_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.620e-25 Identity = 104/156 (66.67%), Postives = 117/156 (75.00%), Query Frame = 2 Query: 647 EGKSYLRVYPLNGETPGVTHFIGVLENLASAQAAAEGXXXXXXXX---ADTIEAARSTSSSATPIAGGAVDGEHSSSGLEAGASEGETSSDSASS--KGRVTFHEGSSRSSGSASGXXXXXXXXSRNHTGVRSGRLHSNTSGGGMTTSSDGDYSNS 1099
+GKSYLRVYPL+GET GVTHFIGVLENL +AQAA + XXXXXXXX + E S+S++++P A A GEHSS GLEAGASEGETSSDSASS KGRV FH+GSS SSGS XXXXXXX HTG RS RL SN S MTT SDG +S+S
Sbjct: 3 KGKSYLRVYPLSGETLGVTHFIGVLENLDTAQAARQXXXXXXXXXXGPSSIGEGPISSSAASSPTAA-AKGGEHSS-GLEAGASEGETSSDSASSAAKGRVKFHDGSSGSSGSXXXXXXXXXXRHHTHTGARSARLTSNNSMS-MTTGSDGGFSSS 155 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.469.1 >prot_C-linearis_contig10.469.1 ID=prot_C-linearis_contig10.469.1|Name=mRNA_C-linearis_contig10.469.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=410bp FKGEGRRDIIRVVLRHGRRRLFGFGNGYRRRRRQRWKCKRQGGRRCRCCGback to top mRNA from alignment at C-linearis_contig10:964162..967746- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.469.1 ID=mRNA_C-linearis_contig10.469.1|Name=mRNA_C-linearis_contig10.469.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3585bp|location=Sequence derived from alignment at C-linearis_contig10:964162..967746- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:964162..967746- >mRNA_C-linearis_contig10.469.1 ID=mRNA_C-linearis_contig10.469.1|Name=mRNA_C-linearis_contig10.469.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at C-linearis_contig10:964162..967746- (Chordaria linearis ClinC8C monoicous)back to top |