Homology
BLAST of mRNA_C-linearis_contig10.467.1 vs. uniprot
Match:
D7G015_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G015_ECTSI)
HSP 1 Score: 232 bits (592), Expect = 5.240e-71
Identity = 140/222 (63.06%), Postives = 159/222 (71.62%), Query Frame = 1
Query: 100 TTEAF--VPALLSAPRCRGASLPDPR--CASSTSPPARIRWAPTASSTSSTSSSARRMFEVVNFDGDGAEGEGEKGYADVTVREAVEWTMGKDSGFTYIDVRSAEEHDKLATVRGALCIPAFEIVMPEAPAAVEGQXXXXXQGEDDAVFAPDYNYEDLDYTIKPDFVDAMKSRFELDAKLLIGCKTDRSAKACELLVDAGFTQVYNVESQIFMRTRAPQVWS 753
TT+AF VP L S P AS P CA R+RW P ASST A RM DG GE EKGY DVTVREAVEWTM +DS F+YID+RSAEEH+KLATVRGALCIPAF++VMPEA EG Q DD +AP YN+E+ DYT+KPDFVD MK+RF+LDAKLLIGCKT RSAKAC+LLV+AGFT++YNVESQIFMRTRAP+VWS
Sbjct: 12 TTQAFLTVPPLTSPPSTACASNPQLHVPCARHL----RLRW-PRASST------AVRMLG--GEDG----GEEEKGYTDVTVREAVEWTMSRDSEFSYIDIRSAEEHEKLATVRGALCIPAFDLVMPEAEEQGEG---LDDQDGDDTGYAPAYNFEESDYTVKPDFVDTMKARFDLDAKLLIGCKTYRSAKACQLLVEAGFTEIYNVESQIFMRTRAPEVWS 213
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.467.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.24e-71 / Id = 63.06 Sequence D7G015_ECTSI
Match Name E-value Identity Description
D7G015_ECTSI 5.240e-71 63.06 Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category chloroplast Ec32 ortholog description Rhodanese-like domain Ec32 ortholog Ec-22_003290.1 Exons 4 Model size 1331 Cds size 696 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927330.8932776-UTR-C-linearis_contig10:949993..950568 1622927330.8932776-UTR-C-linearis_contig10:949993..950568 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 949994..950568 - 1690879630.3125756-UTR-C-linearis_contig10:949993..950568 1690879630.3125756-UTR-C-linearis_contig10:949993..950568 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 949994..950568 - 1622927330.943227-UTR-C-linearis_contig10:953803..953863 1622927330.943227-UTR-C-linearis_contig10:953803..953863 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 953804..953863 - 1690879630.370122-UTR-C-linearis_contig10:953803..953863 1690879630.370122-UTR-C-linearis_contig10:953803..953863 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 953804..953863 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927330.9022505-CDS-C-linearis_contig10:950568..950730 1622927330.9022505-CDS-C-linearis_contig10:950568..950730 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 950569..950730 - 1690879630.3284142-CDS-C-linearis_contig10:950568..950730 1690879630.3284142-CDS-C-linearis_contig10:950568..950730 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 950569..950730 - 1622927330.9103909-CDS-C-linearis_contig10:951398..951564 1622927330.9103909-CDS-C-linearis_contig10:951398..951564 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 951399..951564 - 1690879630.338474-CDS-C-linearis_contig10:951398..951564 1690879630.338474-CDS-C-linearis_contig10:951398..951564 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 951399..951564 - 1622927330.9183028-CDS-C-linearis_contig10:952923..953115 1622927330.9183028-CDS-C-linearis_contig10:952923..953115 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 952924..953115 - 1690879630.3481746-CDS-C-linearis_contig10:952923..953115 1690879630.3481746-CDS-C-linearis_contig10:952923..953115 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 952924..953115 - 1622927330.931354-CDS-C-linearis_contig10:953627..953803 1622927330.931354-CDS-C-linearis_contig10:953627..953803 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 953628..953803 - 1690879630.3622177-CDS-C-linearis_contig10:953627..953803 1690879630.3622177-CDS-C-linearis_contig10:953627..953803 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 953628..953803 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.467.1
>prot_C-linearis_contig10.467.1 ID=prot_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=232bp
MVGPLSLFLLAIATTEAFVPALLSAPRCRGASLPDPRCASSTSPPARIRW back to top mRNA from alignment at C-linearis_contig10:949994..953863-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.467.1 ID=mRNA_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3870bp|location=Sequence derived from alignment at C-linearis_contig10:949994..953863- (Chordaria linearis ClinC8C monoicous)CCCTCTATCTCCCTCTCTCCTTTAGGACACGCACCCTGGAGTGCGGATAA
GGAGAGGATC ATGGTGGGGCCGTTGAGCCTCTTCCTGCTGGCCATTGCCA
CAACGGAGGCCTTCGTGCCCGCGTTGCTGAGCGCACCCCGATGCCGGGGT
GCCAGCCTGCCGGATCCCCGTTGCGCTTCAAGTACCTCGCCACCAGCACG
AATACGGTGGGCACCGACAGCAAGCAGCACGTCTAG GTGAGGGTGGCGGG
TATGCAGCGCCATTCGTTTCGGGGAGCCTCTGCCGGGTAGTCGTTTGGTC
TTTCTGAGAGACTTGGGACCGAATGCATGTAGGCACAGCAGCAGTGAAAC
GAGAAACGACACAAACATGTAGACTTACCCCGGCGGAGCAGAGGTGCCAC
ACACACTCGTGCTGCTATTTCGACACTCCTGCGGTGATCGAGGCCTACCG
TCCACGAGCAGCTAATGCGCAAAGCTTGAGCTCTGTGTTGCGTGTTGTGT
GTGTGTACAAAACACAATTTCAAACCCACACATGTTGCGACAGCAGTTTG
GAGTCTGGTGGCTACAAGCACAGTCTAGACTAGTGTCGACTCGAGGCTTG
TTCGCGCTTTGTCCACACATACACACAGCCTCCTTATCGTGTATCTCTCC
ACTGCCGCCTGAAGCGCATGCACCAATTAGCCCCTCCCTGTGATCGTTTC
CAACACACCCTGGATGGGTTCCGTGCCCTTCATCAATACGGAATGTAGCA
CCAGCAGCAGCGCCCGGCGAATGTTCGAAGTGGTAAATTTCGACGGTGAT
GGGGCCGAGGGTGAAGGCGAAAAGGGCTACGCGGACGTGACCGTGCGAGA
GGCAGTGGAGTGGACGATGGGCAAGGACTCCGGGTTCACGTACATCGACG
TCAGGTCGGCAGAAGAGCACGACAAGCTCGCCACAGTCAG GTGTGGTATC
GTATCAAACGGAGAACGGCCGTTGCCATATACTGGTACCCTGGACCGATT
TTCAAAGCTCGATCACTCCTGAGCAAGAAGAGTAACAGCCCCGGCAAGGG
CTTTGTTGGACGGATAGATCTCGACGAGAGGATAGCTGTCCGAAGCTGTG
TCGGTTGGCATCGCAATCAAACTCGCTGCGGAGTCACCGAGTTGTGAAGA
TCGGCCCGAGGGGTGTGGTATCTTATGTTGTGTAATGGTACATACCAGTC
TATATATGATGGTCGAAGGTACCGCTGTGGCTGCGGTGAATTCGGTGTAG
ACTACTGTACGCACTTGAAACACCGAAACGCGGCATCATCCGAAACGCGG
CATCATCCGAAACGCGGCATTGTCCATCCAGATCATGACAGTCTTGCAGG
AACACTCTGTTGCAGTTGCGTGGGAATGGGCGGAACAGACACCCTCTCGA
AAGTGGCGTATTCTGTTTTCCCCGCGGGTGACATACATACATGCTATATT
CGAATTCGATCATCTGATGATGTCGTACACATGCCGTAGAGTGCCAAGCT
AAGGCATCCACATCCACATCCACATCCACAACCAGAAAATTCAGCGTCGT
GAGCATTGTCCGCTGCTGTACTGCTGTAGACAAAACAAGTATGGTACATA
CTGTGGGCGCCTCATGGTCTTTTGAGAGCTCCGCACGAGGTACCGTAATC
TAAACCCTGCCCCACATCCCGTTTTCGAGGCGAGACCAAACTACCGCCCG
CGTGATGGCTGTAAATATGTAAAAAAAACCAAAGAAAGCAAAGCTCCAAG
GGCATATTTAGATATTAAGTAGGGTATGGAAACCTCTACTTTACCTTGAG
TAGAGTAGAGTATTACACAGCCCAGTACTCTACTCATCTGAGTAGAGTAC
GGAGAGCTGTACTAAAACTACTATTGGGCTGAGTAGAGTATCGAGAGCTC
TACTAAACGTACTTTTGTAAAAGGGGAGTATGGAGAGCTCTACTAAAGCT
TGAGTAGAGTAGAGTACACCCAACCCAATACTCTACTCAGCTGAGTAGGG
TATGGAGAGCTGTACTAAACCTACTATTGGGCTGAGTAGAGTATATTTCG
AGTAAATACCCGCGGTAGGTTTAGTAGGTACTAAATAAACACCCTTGCAA
AGCTCAAGCACGAGAATCAAATTAAATCGCACTCCTCGTTGTTCGTAGTC
ATGCAACCCAAGCCTTTCTTTCATTTGTTATCGTCCCGTCCAGTTGCAGC
ACTCAGTCGAGATCGACACCGACCTTGACCTTGACCTTGACCTTGATCTG
CCCCCCTCCCTTCCCGGGTGTCGTGCGTGGGGTACATTTACGTTTACAGG
GGCGCCCTGTGCATCCCAGCCTTTGAGATCGTCATGCCAGAGGCCCCGGC
GGCGGTAGAGGGGCAGGAGGGGCAGGAGGGGCAGGGTGAGGACGATGCCG
TGTTTGCGCCGGACTACAACTACGAGGATTTAGACTACACGATCAAGCCA
GATTTCGTGGACGCG GTGAGTACTGGCATGATGGTACTGCTGCATCAGTG
TGCACAATTCGTAATTATGTAATTTAGAGTATTGGCAGGGCTATTGGTTG
TCTTGTCCTGGGGGGTACGTGAATCGTTCAGCCGGAGGCGTACGGCAACT
TCGCGTGTGACGCGGCTCTAGTGTTGCAGTCTATATAGCCTGCCGACAAA
AAAGTGAAGGTTGCGTTTGCGGCAGGGGCACAGCAGTATCATATGGCATG
ATCGGGGGAGTCAGTCGGAGGATCCTTCCTGCCCGTGACATGGCCTATAC
TGCACGCGCATGTTTACAGATTTGCAGAAGCAGGATCGCGCGTGGAGGTT
TGGTACCTCCACAGAACTACCTGCATTTCATCCTCTACCTTTCGTGCTCC
CCTCTACGATAGTGGTTTCGTCAAATACTTGTTACCAGACGAGACCGGGA
TGGTTTTTAATGTGAAGACAACAACAACAACAACAATTACCAGCGTTGAT
CCTGATCGTATTTCGTGGTTCATTTTAGAAGGATGCCCCTCGCCGAAACA
GCTGCCGATCTGAAGGCGTGAACGGCTTGGCGCTGCTCTCTCTTTCTTCG
TTCCCTCAACCGACTTTGGCCTCATCACGCAAAACGCGTGGTGTACGACG
ATCAATTTACCGTTTTTTTTTCTTTTTTTGCAGATGAAGTCACGGTTCGA
GCTCGACGCGAAGCTGCTGATTGGCTGCAAGACTGACAGATCCGCCAAGG
CTTGCGAGCTCCTGGTTGACGCAGGATTCACTCAGGTCTACAACGTGGAG
AGCCAGATTTTCATGAGAACACGGGCACCGCAAGTGTGGTCGTAA AGATG
CGTACTCGGAGAAAGCTCTGCCGTAATGCGGGCGGCGTACAATAAGGCCA
AGCGCTTTTAGAAATCACGCTTTACGAAGAATTAGGTACAGCGCGATTCG
ATGACCGGCGTTTTCTGGTTCTTCCGCGGACACACAAGGGGCATCAGGCG
TTGGTGTCTGGTGGCGTTGGTTTGGCTTTAGCGCACACGCAAGAAACAAG
AAGCGTTGTTGTGGATTTGAGTTTTATGTTGGCGCCCACGGAGCAGCATT
GACTGGATCTGTCTTTTATCTTTCATCTTTGCGCATTTGGCTCGTCCGTC
TATTTCTTTCTAGAGCCAGCACGATACGTTTCGTGACCCACCCGCAAGCG
TCTGGCCGGTGGTTGTTACGAGTGATGGCGGAGTTCGTCTTGGAAGCACT
CTGGACGTCTTTCAGTTTCCTGACCGCTTCTTATTCTCGTGTAATGCTTT
TTTCCGTCCTGCTGTGCCCCGTCTATCGGAAAAGACATGCTAGCACAGAC
CAGTCAGTAAAGTCGCGAAACACGAATCATCTATGTCCACAGCGAGGTGG
ATTCAGCAGGCACGCCGAAT back to top Coding sequence (CDS) from alignment at C-linearis_contig10:949994..953863-
>mRNA_C-linearis_contig10.467.1 ID=mRNA_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at C-linearis_contig10:949994..953863- (Chordaria linearis ClinC8C monoicous) back to top